Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN21G2260 Fragaria x ananassa HOM05D004298 ORTHO05D006236 0.0e+00 1475.3 741 100.0
FAN25G3839 Fragaria x ananassa HOM05D004298 ORTHO05D006236 0.0e+00 1460.3 741 98.9
FvH4_3g32460 Fragaria vesca HOM05D004298 ORTHO05D006236 0.0e+00 1452.6 741 98.5
FAN16G0818 Fragaria x ananassa HOM05D004298 ORTHO05D006236 0.0e+00 1449.9 741 98.2
FAN11G2723 Fragaria x ananassa HOM05D004298 ORTHO05D006236 0.0e+00 1449.1 741 98.4
RcHm_v2.0_Chr5g0059471 Rosa chinensis HOM05D004298 ORTHO05D006236 0.0e+00 1424.8 741 96.1
Prupe.6G101000 Prunus persica HOM05D004298 ORTHO05D006236 0.0e+00 1403.7 741 93.3
MD11G1135000 Malus domestica HOM05D004298 ORTHO05D006236 0.0e+00 1401.0 742 93.4
MD03G1117300 Malus domestica HOM05D004298 ORTHO05D006236 0.0e+00 1392.1 741 92.8
QL01p022296 Quercus lobata HOM05D004298 ORTHO05D006236 0.0e+00 1357.8 741 90.4
Manes.11G144700 Manihot esculenta HOM05D004298 ORTHO05D006236 0.0e+00 1355.1 741 89.9
CiPaw.13G112600 Carya illinoinensis HOM05D004298 ORTHO05D006236 0.0e+00 1354.3 741 89.9
Manes.04G021700 Manihot esculenta HOM05D004298 ORTHO05D006236 0.0e+00 1353.2 741 89.5
Thecc.09G340000 Theobroma cacao HOM05D004298 ORTHO05D006236 0.0e+00 1350.1 741 89.1
Duzib168G1617 Durio zibethinus HOM05D004298 ORTHO05D006236 0.0e+00 1345.5 741 88.8
Cpa.g.sc216.13 Carica papaya HOM05D004298 ORTHO05D006236 0.0e+00 1345.1 741 89.2
CiPaw.14G080300 Carya illinoinensis HOM05D004298 ORTHO05D006236 0.0e+00 1343.2 743 89.1
arahy.Tifrunner.gnm1.ann1.VBZF8N Arachis hypogaea HOM05D004298 ORTHO05D006236 0.0e+00 1342.4 739 89.0
GSVIVG01025182001 Vitis vinifera HOM05D004298 ORTHO05D006236 0.0e+00 1342.4 741 88.7
CSS0023686 Camellia sinensis var. sinensis HOM05D004298 ORTHO05D006236 0.0e+00 1340.5 741 88.9
Hma1.2p1_1031F.1_g250050 Hydrangea macrophylla HOM05D004298 ORTHO05D006236 0.0e+00 1340.1 739 89.3
Peaxi162Scf00270g00819 Petunia axillaris HOM05D004298 ORTHO05D006236 0.0e+00 1339.7 741 89.2
arahy.Tifrunner.gnm1.ann1.ETHX4E Arachis hypogaea HOM05D004298 ORTHO05D006236 0.0e+00 1338.6 739 88.8
CSS0023657 Camellia sinensis var. sinensis HOM05D004298 ORTHO05D006236 0.0e+00 1337.0 740 88.8
CANSAT54G2863 Cannabis sativa HOM05D004298 ORTHO05D006236 0.0e+00 1336.2 741 88.7
CSS0037274 Camellia sinensis var. sinensis HOM05D004298 ORTHO05D006236 0.0e+00 1335.1 740 88.6
Nn2g10781 Nelumbo nucifera HOM05D004298 ORTHO05D006236 0.0e+00 1331.6 741 88.4
PGR102G1912 Punica granatum HOM05D004298 ORTHO05D006236 0.0e+00 1330.1 741 88.3
Haze_23837 Corylus avellana HOM05D004298 ORTHO05D006236 0.0e+00 1329.7 763 86.8
Haze_23839 Corylus avellana HOM05D004298 ORTHO05D006236 0.0e+00 1329.7 763 86.8
Gorai.004G228600 Gossypium raimondii HOM05D004298 ORTHO05D006236 0.0e+00 1328.9 741 87.6
Lj3g0003128 Lotus japonicus HOM05D004298 ORTHO05D006236 0.0e+00 1328.9 768 85.7
Glyma.13G326400 Glycine max HOM05D004298 ORTHO05D006236 0.0e+00 1327.8 743 88.0
Gohir.D08G214700 Gossypium hirsutum HOM05D004298 ORTHO05D006236 0.0e+00 1327.8 741 87.4
TPR.G11486 Trifolium pratense HOM05D004298 ORTHO05D006236 0.0e+00 1327.4 741 88.1
Sabra09G0008100 Salix brachista HOM05D004298 ORTHO05D006236 0.0e+00 1326.2 741 88.1
TWI79G1123 Tripterygium wilfordii HOM05D004298 ORTHO05D006236 0.0e+00 1325.8 741 88.0
VMungo1080G1181 Vigna mungo HOM05D004298 ORTHO05D006236 0.0e+00 1325.5 741 87.4
Potri.009G013400 Populus trichocarpa HOM05D004298 ORTHO05D006236 0.0e+00 1324.3 740 88.1
Solyc11g069380.2 Solanum lycopersicum HOM05D004298 ORTHO05D006236 0.0e+00 1322.8 741 88.0
Sopen11g028100 Solanum pennellii HOM05D004298 ORTHO05D006236 0.0e+00 1322.8 741 87.7
Actinidia20454 Actinidia chinensis HOM05D004298 ORTHO05D006236 0.0e+00 1321.6 741 88.0
Potri.004G210400 Populus trichocarpa HOM05D004298 ORTHO05D006236 0.0e+00 1321.2 739 88.1
Gohir.A08G197500 Gossypium hirsutum HOM05D004298 ORTHO05D006236 0.0e+00 1319.7 747 86.7
Ca_01417_v3 Cicer arietinum L. HOM05D004298 ORTHO05D006236 0.0e+00 1319.3 741 87.6
Psat5g278240 Pisum sativum HOM05D004298 ORTHO05D006236 0.0e+00 1318.9 741 87.3
Ciclev10027881m.g Citrus clementina HOM05D004298 ORTHO05D006236 0.0e+00 1318.5 742 87.2
Medtr2g094160 Medicago truncatula HOM05D004298 ORTHO05D006236 0.0e+00 1317.8 741 87.4
PGSC0003DMG400008050 Solanum tuberosum HOM05D004298 ORTHO05D006236 0.0e+00 1317.4 741 88.1
Sabra04G0142000 Salix brachista HOM05D004298 ORTHO05D006236 0.0e+00 1315.1 745 87.5
Nitab4.5_0000650g0220 Nicotiana tabacum HOM05D004298 ORTHO05D006236 0.0e+00 1313.5 741 87.4
TAR636G1671 Trochodendron aralioides HOM05D004298 ORTHO05D006236 0.0e+00 1313.1 742 86.8
Phvul.005G135800 Phaseolus vulgaris HOM05D004298 ORTHO05D006236 0.0e+00 1312.4 741 86.2
CAN.G631.24 Capsicum annuum HOM05D004298 ORTHO05D006236 0.0e+00 1311.6 741 87.3
TAR636G3405 Trochodendron aralioides HOM05D004298 ORTHO05D006236 0.0e+00 1310.0 742 86.5
Rhsim01G0217200 Rhododendron simsii HOM05D004298 ORTHO05D006236 0.0e+00 1307.0 735 87.2
TWI31G1183 Tripterygium wilfordii HOM05D004298 ORTHO05D006236 0.0e+00 1306.6 741 86.1
MELO3C005061.2 Cucumis melo HOM05D004298 ORTHO05D006236 0.0e+00 1302.0 740 86.5
Eucgr.B02495 Eucalyptus grandis HOM05D004298 ORTHO05D006236 0.0e+00 1302.0 741 86.9
Sed0018088 Sechium edule HOM05D004298 ORTHO05D006236 0.0e+00 1301.2 740 86.2
CsaV3_1G012820 Cucumis sativus L. HOM05D004298 ORTHO05D006236 0.0e+00 1300.4 740 86.4
Lsat_1_v5_gn_2_98360 Lactuca sativa HOM05D004298 ORTHO05D006236 0.0e+00 1300.0 741 86.2
AUR62024990 Chenopodium quinoa HOM05D004298 ORTHO05D006236 0.0e+00 1298.5 741 85.7
HanXRQChr07g0197541 Helianthus annuus HOM05D004298 ORTHO05D006236 0.0e+00 1298.5 741 86.0
Lj2C1029T7 Lonicera japonica HOM05D004298 ORTHO05D006236 0.0e+00 1298.5 743 85.9
HanXRQChr14g0452871 Helianthus annuus HOM05D004298 ORTHO05D006236 0.0e+00 1297.7 741 85.6
CARHR274260 Cardamine hirsuta HOM05D004298 ORTHO05D006236 0.0e+00 1297.3 740 85.7
SalBow3G4399 Salvia bowleyana HOM05D004298 ORTHO05D006236 0.0e+00 1297.3 743 86.0
Lalb_Chr14g0374701 Lupinus albus HOM05D004298 ORTHO05D006236 0.0e+00 1297.0 738 86.0
Lalb_Chr03g0027311 Lupinus albus HOM05D004298 ORTHO05D006236 0.0e+00 1295.4 743 85.6
MSTRG.17806 Avicennia marina HOM05D004298 ORTHO05D006236 0.0e+00 1294.3 743 85.7
DCAR_015537 Daucus carota HOM05D004298 ORTHO05D006236 0.0e+00 1293.1 741 85.3
Oeu002865.1 Olea europaea HOM05D004298 ORTHO05D006236 0.0e+00 1293.1 744 86.8
THA.LOC104810855 Tarenaya hassleriana HOM05D004298 ORTHO05D006236 0.0e+00 1292.7 741 85.7
PSO384G0735 Papaver somniferum HOM05D004298 ORTHO05D006236 0.0e+00 1290.4 744 85.9
Sp6g22170 Schrenkiella parvula HOM05D004298 ORTHO05D006236 0.0e+00 1289.6 740 84.6
Oeu059093.1 Olea europaea HOM05D004298 ORTHO05D006236 0.0e+00 1288.9 743 86.3
Aa31LG1G12580 Aethionema arabicum HOM05D004298 ORTHO05D006236 0.0e+00 1288.5 740 84.6
MSTRG.12319 Avicennia marina HOM05D004298 ORTHO05D006236 0.0e+00 1287.7 743 85.9
A10p17790 Brassica napus HOM05D004298 ORTHO05D006236 0.0e+00 1287.7 740 84.7
BraA10t43856Z Brassica rapa HOM05D004298 ORTHO05D006236 0.0e+00 1287.7 740 84.7
Carub.0008s2128 Capsella rubella HOM05D004298 ORTHO05D006236 0.0e+00 1287.7 740 84.6
PSO339G0771 Papaver somniferum HOM05D004298 ORTHO05D006236 0.0e+00 1287.7 744 85.6
Ah.01g014360 Amaranthus hybridus HOM05D004298 ORTHO05D006236 0.0e+00 1287.3 742 84.6
EL10Ac9g22507 Beta vulgaris HOM05D004298 ORTHO05D006236 0.0e+00 1287.3 741 84.9
AL8G37190 Arabidopsis lyrata HOM05D004298 ORTHO05D006236 0.0e+00 1286.6 740 84.5
AT5G60600 Arabidopsis thaliana HOM05D004298 ORTHO05D006236 0.0e+00 1285.8 740 84.5
Migut.N02606 Erythranthe guttata HOM05D004298 ORTHO05D006236 0.0e+00 1285.4 744 85.8
ATR0115G030 Amborella trichopoda HOM05D004298 ORTHO05D006236 0.0e+00 1284.6 744 85.1
Dinv32749 Davidia involucrata HOM05D004298 ORTHO05D006236 0.0e+00 1284.6 707 89.5
arahy.Tifrunner.gnm1.ann1.068WZH Arachis hypogaea HOM05D004298 ORTHO05D006236 0.0e+00 1284.2 742 85.3
Thhalv10012774m.g Eutrema salsugineum HOM05D004298 ORTHO05D006236 0.0e+00 1283.5 741 84.5
arahy.Tifrunner.gnm1.ann1.X2DMBM Arachis hypogaea HOM05D004298 ORTHO05D006236 0.0e+00 1282.7 743 85.2
BcaB08g36355 Brassica carinata HOM05D004298 ORTHO05D006236 0.0e+00 1280.8 741 84.6
Aqoxy1G01246 Aquilegia oxysepala HOM05D004298 ORTHO05D006236 0.0e+00 1279.2 741 85.4
Cc01_g11160 Coffea canephora HOM05D004298 ORTHO05D006236 0.0e+00 1279.2 741 85.2
C09p53300 Brassica napus HOM05D004298 ORTHO05D006236 0.0e+00 1277.3 740 84.7
ECA238G4788 Erigeron canadensis HOM05D004298 ORTHO05D006236 0.0e+00 1277.3 742 84.4
ClCG03G002170 Citrullus lanatus HOM05D004298 ORTHO05D006236 0.0e+00 1275.8 803 79.8
TAR633G1103 Trochodendron aralioides HOM05D004298 ORTHO05D006236 0.0e+00 1268.8 711 88.0
BcaC04g19719 Brassica carinata HOM05D004298 ORTHO05D006236 0.0e+00 1267.7 737 84.4
Lalb_Chr24g0394611 Lupinus albus HOM05D004298 ORTHO05D006236 0.0e+00 1266.1 738 84.3
vmacro14439 Vaccinium macrocarpon HOM05D004298 ORTHO05D006236 0.0e+00 1266.1 822 78.1
AUR62039630 Chenopodium quinoa HOM05D004298 ORTHO05D006236 0.0e+00 1265.8 757 82.7
CDE02G3870 Ceratophyllum demersum HOM05D004298 ORTHO05D006236 0.0e+00 1265.4 747 83.8
Hund08138 Selenicereus undatus HOM05D004298 ORTHO05D006236 0.0e+00 1265.0 741 83.5
BolC9t58204H Brassica oleracea HOM05D004298 ORTHO05D006236 0.0e+00 1251.9 773 81.0
Os02g0603800 Oryza sativa ssp. japonica HOM05D004298 ORTHO05D006236 0.0e+00 1247.6 745 83.1
unitig_27.g25060 Utricularia gibba HOM05D004298 ORTHO05D006236 0.0e+00 1237.2 713 85.4
DCAR_006060 Daucus carota HOM05D004298 ORTHO05D006236 0.0e+00 1234.9 707 85.6
Zm00001eb246530 Zea mays HOM05D004298 ORTHO05D006236 0.0e+00 1230.3 747 82.2
Lj2C1029G11 Lonicera japonica HOM05D004298 ORTHO05D006236 0.0e+00 1229.2 741 82.7
SEGI_29082 Sequoiadendron giganteum HOM05D004298 ORTHO05D006236 0.0e+00 1228.0 737 82.4
Actinidia03730 Actinidia chinensis HOM05D004298 ORTHO05D006236 0.0e+00 1227.6 736 83.8
MBI07_g19314_MAGBIO Magnolia biondii HOM05D004298 ORTHO05D006236 0.0e+00 1227.2 710 85.6
CDE08G0282 Ceratophyllum demersum HOM05D004298 ORTHO05D006236 0.0e+00 1211.8 747 80.6
Glyma.12G173200 Glycine max HOM05D004298 ORTHO05D006236 0.0e+00 1207.2 674 88.6
Atru.BG.119.p Acer truncatum HOM05D004298 ORTHO05D006236 0.0e+00 1205.7 668 88.5
SGA_v2.0_scaffold2G00894 Striga asiatica HOM05D004298 ORTHO05D006236 0.0e+00 1181.8 750 79.7
Sc06g0010150 Simmondsia chinensis HOM05D004298 ORTHO05D006236 0.0e+00 1134.8 616 89.4
HPP92_014714 Vanilla planifolia HOM05D004298 ORTHO05D006236 0.0e+00 1133.6 631 87.6
Mapoly0048s0084 Marchantia polymorpha HOM05D004298 ORTHO05D006236 0.0e+00 1130.2 739 75.5
SMO146G0141 Selaginella moellendorffii HOM05D004298 ORTHO05D006236 0.0e+00 1116.3 686 78.4
Pp3c19_16320 Physcomitrium patens HOM05D004298 ORTHO05D006236 0.0e+00 1114.4 746 73.3
Pp3c22_14940 Physcomitrium patens HOM05D004298 ORTHO05D006236 0.0e+00 1095.9 714 74.2
Pp3c21_19070 Physcomitrium patens HOM05D004298 ORTHO05D006236 0.0e+00 1076.2 712 73.9
AagrBONN_evm.TU.Sc2ySwM_117.2437 Anthoceros agrestis HOM05D004298 ORTHO05D006236 7.5e-298 1026.9 636 78.9
Cre12.g490350 Chlamydomonas reinhardtii HOM05D004298 ORTHO05D006236 1.8e-243 846.3 667 63.0
MCO10G060 Micromonas commoda HOM05D004298 ORTHO05D006236 6.9e-235 817.8 699 60.2
Nitab4.5_0006333g0040 Nicotiana tabacum HOM05D004298 ORTHO05D006236 4.1e-227 792.0 540 76.5
PRCOL_00002263 Prasinoderma coloniale HOM05D004298 ORTHO05D006236 3.8e-217 758.8 644 61.2
Hma1.2p1_0391F.1_g142750 Hydrangea macrophylla HOM05D004298 ORTHO05D006236 1.6e-210 736.9 523 73.2
Nitab4.5_0012814g0010 Nicotiana tabacum HOM05D004298 ORTHO05D006236 6.5e-209 731.5 741 55.9
Nitab4.5_0011114g0030 Nicotiana tabacum HOM05D004298 ORTHO05D006236 1.2e-207 727.2 739 55.6
Atru.chr3.3635 Acer truncatum HOM05D004298 ORTHO05D006236 3.6e-207 725.7 464 78.9
COL.COLO4_18338 Corchorus olitorius HOM05D004298 ORTHO05D006236 2.3e-206 723.0 453 80.6
SGA_v2.0_scaffold84G26546 Striga asiatica HOM05D004298 ORTHO05D006236 1.5e-133 481.1 433 60.0
HanXRQChr13g0402271 Helianthus annuus HOM05D004298 ORTHO05D006236 1.3e-132 478.0 263 88.2
Hma1.2p1_1031F.1_g250040 Hydrangea macrophylla HOM05D004298 ORTHO05D006236 6.7e-97 359.4 218 83.0
CBR_g51121 Chara braunii HOM05D004298 ORTHO05D006236 3.6e-82 310.5 578 36.5
C09p53310 Brassica napus HOM05D004298 ORTHO05D006236 8.0e-74 282.7 152 87.5
HanXRQChr02g0034121 Helianthus annuus HOM05D004298 ORTHO05D006236 1.4e-70 271.9 143 91.6
Nitab4.5_0005621g0180 Nicotiana tabacum HOM05D004609 ORTHO05D005537 4.7e-58 230.3 170 71.2
Ca_28980_v3 Cicer arietinum L. HOM05D004298 ORTHO05D007370 2.0e-40 171.8 322 35.4
MBI12_g33358_MAGBIO Magnolia biondii HOM05D004298 ORTHO05D025791 4.1e-38 164.1 84 90.5
TAR636G3504 Trochodendron aralioides HOM05D004298 ORTHO05D023169 5.1e-36 157.1 98 74.5
MBI12_g31227_MAGBIO Magnolia biondii HOM05D004298 ORTHO05D025791 1.6e-34 152.1 80 88.8
HanXRQChr12g0375701 Helianthus annuus HOM05D004298 ORTHO05D006236 2.3e-28 131.7 72 86.1
TAR636G1311 Trochodendron aralioides HOM05D004298 ORTHO05D023169 4.8e-26 124.0 80 71.2
CAN.G907.27 Capsicum annuum HOM05D002478 ORTHO05D020307 8.1e-26 123.2 71 84.5
SEGI_39119 Sequoiadendron giganteum HOM05D004298 ORTHO05D006236 1.1e-22 112.8 69 73.9
Nn1g05516 Nelumbo nucifera HOM05D001057 ORTHO05D002028 2.7e-21 108.2 70 75.7
COL.COLO4_18339 Corchorus olitorius HOM05D004298 ORTHO05D160745 2.3e-20 105.1 69 73.9
arahy.Tifrunner.gnm1.ann1.BZC8YM Arachis hypogaea HOM05D004298 ORTHO05D000893 3.9e-20 104.4 108 53.7
CAN.G53.21 Capsicum annuum HOM05D002478 ORTHO05D020307 5.1e-20 104.0 73 76.7
SEGI_37191 Sequoiadendron giganteum HOM05D004298 ORTHO05D050955 2.1e-18 98.6 222 34.2
Hma1.2p1_1050F.1_g251950 Hydrangea macrophylla HOM05D004298 ORTHO05D004816 8.1e-18 96.7 67 71.6
Hma1.2p1_0105F.1_g050690 Hydrangea macrophylla HOM05D004298 ORTHO05D004816 6.9e-17 93.6 67 68.7
SGA_v2.0_scaffold12G06316 Striga asiatica HOM05D004298 ORTHO05D023169 3.4e-16 91.3 85 51.8
SGA_v2.0_scaffold290G47319 Striga asiatica HOM05D004298 ORTHO05D023169 1.4e-14 85.9 85 49.4
Peaxi162Scf00218g02111 Petunia axillaris HOM05D004298 ORTHO05D008833 3.2e-14 84.7 49 91.8
Cc00_g31230 Coffea canephora HOM05D004298 ORTHO05D006236 3.9e-12 77.8 47 76.6
SEGI_34190 Sequoiadendron giganteum HOM05D004298 ORTHO05D050955 8.7e-12 76.6 61 60.7
CAN.G548.17 Capsicum annuum HOM05D002478 ORTHO05D005706 1.3e-10 72.8 43 74.4
SEGI_14813 Sequoiadendron giganteum HOM05D016845 ORTHO05D018122 4.8e-10 70.9 41 80.5
TAR381G0461 Trochodendron aralioides HOM05D004298 ORTHO05D023169 1.4e-09 69.3 47 66.0
TAR156G0002 Trochodendron aralioides HOM05D000002 ORTHO05D000001 4.0e-09 67.8 46 65.2
TAR381G1634 Trochodendron aralioides HOM05D004298 ORTHO05D023169 5.3e-09 67.4 45 66.7
TAR625G1187 Trochodendron aralioides HOM05D006212 ORTHO05D008245 2.9e-07 61.6 33 84.8
SGA_v2.0_scaffold28G11882 Striga asiatica HOM05D000239 ORTHO05D000484 1.1e-06 59.7 51 45.1
CAN.G970.17 Capsicum annuum HOM05D004298 ORTHO05D115446 7.1e-06 57.0 58 53.4


User provided reference genes

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