Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN21G1995 Fragaria x ananassa HOM05D001876 ORTHO05D002002 5.8e-65 250.8 128 100.0
FvH4_3g41972 Fragaria vesca HOM05D001876 ORTHO05D002002 8.8e-29 130.6 98 74.5
FAN11G3885 Fragaria x ananassa HOM05D001876 ORTHO05D002002 8.8e-29 130.6 98 74.5
FAN25G1930 Fragaria x ananassa HOM05D001876 ORTHO05D002002 3.1e-26 122.1 98 68.4
FAN21G2243 Fragaria x ananassa HOM05D001876 ORTHO05D002002 5.3e-26 121.3 98 68.4
RcHm_v2.0_Chr4g0389341 Rosa chinensis HOM05D001876 ORTHO05D002002 6.5e-24 114.4 116 59.5
DCAR_017598 Daucus carota HOM05D001876 ORTHO05D002002 1.1e-23 113.6 98 64.3
Nitab4.5_0000152g0190 Nicotiana tabacum HOM05D001876 ORTHO05D002002 1.1e-23 113.6 98 64.3
Nitab4.5_0001303g0100 Nicotiana tabacum HOM05D001876 ORTHO05D002002 1.1e-23 113.6 98 64.3
Cfa016942 Carpinus fangiana HOM05D001876 ORTHO05D002002 1.5e-23 113.2 114 58.8
Hma1.2p1_0193F.1_g084140 Hydrangea macrophylla HOM05D001876 ORTHO05D002002 3.2e-23 112.1 97 63.9
Hma1.2p1_2995F.1_g331450 Hydrangea macrophylla HOM05D001876 ORTHO05D002002 3.2e-23 112.1 97 63.9
Carub.0003s1268 Capsella rubella HOM05D001876 ORTHO05D002002 4.2e-23 111.7 95 63.2
Lj6g0010416 Lotus japonicus HOM05D001876 ORTHO05D002002 4.2e-23 111.7 114 57.9
TAR627G0307 Trochodendron aralioides HOM05D001876 ORTHO05D002002 4.2e-23 111.7 97 64.9
Atru.chr2.3845 Acer truncatum HOM05D001876 ORTHO05D002002 1.2e-22 110.2 97 63.9
Haze_09897 Corylus avellana HOM05D001876 ORTHO05D002002 1.2e-22 110.2 114 57.0
HanXRQChr11g0334581 Helianthus annuus HOM05D001876 ORTHO05D002002 1.6e-22 109.8 96 63.5
AT3G13300 Arabidopsis thaliana HOM05D001876 ORTHO05D002002 3.6e-22 108.6 97 61.9
Aa31LG10G500 Aethionema arabicum HOM05D001876 ORTHO05D002002 4.7e-22 108.2 96 60.4
AL3G25120 Arabidopsis lyrata HOM05D001876 ORTHO05D002002 1.4e-21 106.7 97 59.8
Glyma.18G072400 Glycine max HOM05D001876 ORTHO05D002002 1.4e-21 106.7 114 56.1
TAR629G2148 Trochodendron aralioides HOM05D001876 ORTHO05D002002 2.3e-21 105.9 97 62.9
arahy.Tifrunner.gnm1.ann1.SQBY3A Arachis hypogaea HOM05D001876 ORTHO05D002002 3.0e-21 105.5 115 53.9
Duzib170G0551 Durio zibethinus HOM05D001876 ORTHO05D002002 3.0e-21 105.5 97 59.8
FAN16G1749 Fragaria x ananassa HOM05D001876 ORTHO05D002002 4.0e-21 105.1 73 78.1
Sabra16G0318400 Salix brachista HOM05D001876 ORTHO05D002002 4.0e-21 105.1 95 61.1
TWI38G1429 Tripterygium wilfordii HOM05D001876 ORTHO05D002002 5.2e-21 104.8 98 60.2
Rhsim06G0234000 Rhododendron simsii HOM05D001876 ORTHO05D002002 6.7e-21 104.4 116 53.4
arahy.Tifrunner.gnm1.ann1.ADA7T8 Arachis hypogaea HOM05D001876 ORTHO05D002002 8.8e-21 104.0 115 53.0
arahy.Tifrunner.gnm1.ann1.LQ166S Arachis hypogaea HOM05D001876 ORTHO05D002002 8.8e-21 104.0 115 53.0
Duzib213G0425 Durio zibethinus HOM05D001876 ORTHO05D002002 1.5e-20 103.2 97 58.8
Lalb_Chr20g0115301 Lupinus albus HOM05D001876 ORTHO05D002002 2.0e-20 102.8 97 59.8
Nn1g07691 Nelumbo nucifera HOM05D001876 ORTHO05D002002 2.0e-20 102.8 97 56.7
Potri.011G166400 Populus trichocarpa HOM05D001876 ORTHO05D002002 2.0e-20 102.8 96 60.4
THA.LOC104810297 Tarenaya hassleriana HOM05D001876 ORTHO05D002002 2.0e-20 102.8 96 55.2
Dinv06828 Davidia involucrata HOM05D001876 ORTHO05D002002 2.6e-20 102.4 97 58.8
FAN25G2172 Fragaria x ananassa HOM05D001876 ORTHO05D002002 2.6e-20 102.4 73 79.5
Peaxi162Scf00006g00717 Petunia axillaris HOM05D001876 ORTHO05D002002 2.6e-20 102.4 98 59.2
Phvul.006G060500 Phaseolus vulgaris HOM05D001876 ORTHO05D002002 2.6e-20 102.4 97 59.8
VMungo0540G1408 Vigna mungo HOM05D001876 ORTHO05D002002 2.6e-20 102.4 97 59.8
arahy.Tifrunner.gnm1.ann1.49CTIT Arachis hypogaea HOM05D001876 ORTHO05D002002 3.3e-20 102.1 115 52.2
MBI11_g40896_MAGBIO Magnolia biondii HOM05D001876 ORTHO05D002002 3.3e-20 102.1 97 58.8
Cpa.g.sc27.194 Carica papaya HOM05D001876 ORTHO05D002002 5.7e-20 101.3 114 55.3
Gohir.D08G036200 Gossypium hirsutum HOM05D001876 ORTHO05D002002 5.7e-20 101.3 98 58.2
Gorai.004G034200 Gossypium raimondii HOM05D001876 ORTHO05D002002 5.7e-20 101.3 98 58.2
TAR626G0018 Trochodendron aralioides HOM05D001876 ORTHO05D002002 5.7e-20 101.3 97 58.8
MBI15_g41024_MAGBIO Magnolia biondii HOM05D001876 ORTHO05D002002 7.4e-20 100.9 97 56.7
RcHm_v2.0_Chr4g0389211 Rosa chinensis HOM05D001876 ORTHO05D019192 9.7e-20 100.5 69 78.3
TPR.G17949 Trifolium pratense HOM05D001876 ORTHO05D002002 9.7e-20 100.5 97 57.7
Ca_14851_v3 Cicer arietinum L. HOM05D001876 ORTHO05D002002 2.2e-19 99.4 114 55.3
SHI21632 Sapria himalayana HOM05D001876 ORTHO05D002002 2.2e-19 99.4 73 69.9
FvH4_3g41980 Fragaria vesca HOM05D001876 ORTHO05D002002 2.8e-19 99.0 62 83.9
Potri.016G002100 Populus trichocarpa HOM05D001876 ORTHO05D002002 3.7e-19 98.6 98 57.1
Gohir.A08G025700 Gossypium hirsutum HOM05D001876 ORTHO05D002002 4.8e-19 98.2 98 57.1
Hund01842 Selenicereus undatus HOM05D001876 ORTHO05D002002 6.3e-19 97.8 97 57.7
MBI15_g00880_MAGBIO Magnolia biondii HOM05D001876 ORTHO05D002002 1.1e-18 97.1 97 57.7
MBI15_g35676_MAGBIO Magnolia biondii HOM05D001876 ORTHO05D002002 3.1e-18 95.5 95 55.8
Peaxi162Scf00232g00036 Petunia axillaris HOM05D001876 ORTHO05D002002 4.1e-18 95.1 98 57.1
HanXRQChr03g0077781 Helianthus annuus HOM05D001876 ORTHO05D002002 9.1e-18 94.0 70 67.1
CiPaw.10G084200 Carya illinoinensis HOM05D001876 ORTHO05D002002 1.6e-17 93.2 114 47.4
Actinidia10583 Actinidia chinensis HOM05D001876 ORTHO05D002002 2.6e-17 92.4 98 58.2
THA.LOC104822709 Tarenaya hassleriana HOM05D001876 ORTHO05D002002 3.5e-17 92.0 96 53.1
Cfa000007 Carpinus fangiana HOM05D001876 ORTHO05D002002 4.5e-17 91.7 114 48.2
Lsat_1_v5_gn_7_116441 Lactuca sativa HOM05D001876 ORTHO05D002002 4.5e-17 91.7 115 47.0
Medtr3g061160 Medicago truncatula HOM05D001876 ORTHO05D002002 4.5e-17 91.7 97 54.6
AUR62035638 Chenopodium quinoa HOM05D001876 ORTHO05D002002 5.9e-17 91.3 97 57.7
RcHm_v2.0_Chr4g0407801 Rosa chinensis HOM05D000005 ORTHO05D000012 5.9e-17 91.3 71 70.4
Haze_07052 Corylus avellana HOM05D001876 ORTHO05D002002 1.0e-16 90.5 126 46.8
Potri.001G469500 Populus trichocarpa HOM05D001876 ORTHO05D002002 1.7e-16 89.7 97 53.6
PGR083G2540 Punica granatum HOM05D001876 ORTHO05D002002 2.2e-16 89.4 120 45.0
FAN01G0741 Fragaria x ananassa HOM05D001876 ORTHO05D019192 2.9e-16 89.0 77 71.4
FAN03G1210 Fragaria x ananassa HOM05D001876 ORTHO05D019192 8.5e-16 87.4 78 69.2
RcHm_v2.0_Chr4g0386931 Rosa chinensis HOM05D001876 ORTHO05D002002 8.5e-16 87.4 76 65.8
AT3G13290 Arabidopsis thaliana HOM05D001876 ORTHO05D002002 1.1e-15 87.0 95 52.6
FvH4_7g10420 Fragaria vesca HOM05D001876 ORTHO05D019192 3.2e-15 85.5 77 68.8
FAN06G0414 Fragaria x ananassa HOM05D001876 ORTHO05D019192 3.2e-15 85.5 78 66.7
QL05p066377 Quercus lobata HOM05D001876 ORTHO05D002002 3.2e-15 85.5 95 50.5
GSVIVG01014783001 Vitis vinifera HOM05D001876 ORTHO05D002002 3.2e-15 85.5 97 52.6
FAN10G1274 Fragaria x ananassa HOM05D030657 ORTHO05D019192 4.2e-15 85.1 77 68.8
DCAR_013771 Daucus carota HOM05D001876 ORTHO05D002002 5.5e-15 84.7 98 54.1
SGA_v2.0_scaffold42G15938 Striga asiatica HOM05D001876 ORTHO05D002002 1.2e-14 83.6 97 50.5
RcHm_v2.0_Chr5g0075171 Rosa chinensis HOM05D001876 ORTHO05D002002 1.6e-14 83.2 48 87.5
Dinv10376 Davidia involucrata HOM05D001876 ORTHO05D002002 4.7e-14 81.6 97 50.5
GSVIVG01037795001 Vitis vinifera HOM05D001876 ORTHO05D002002 4.7e-14 81.6 98 48.0
GSVIVG01006976001 Vitis vinifera HOM05D001876 ORTHO05D002002 8.0e-14 80.9 95 49.5
CiPaw.09G112100 Carya illinoinensis HOM05D001876 ORTHO05D002002 1.4e-13 80.1 114 44.7
CDE10G0783 Ceratophyllum demersum HOM05D001876 ORTHO05D002002 1.8e-13 79.7 95 49.5
CDE10G0998 Ceratophyllum demersum HOM05D001876 ORTHO05D002002 1.8e-13 79.7 95 50.5
Dinv04380 Davidia involucrata HOM05D001876 ORTHO05D002002 5.2e-13 78.2 87 55.2
Sopen07g034150 Solanum pennellii HOM05D001876 ORTHO05D002002 5.2e-13 78.2 68 63.2
Potri.006G001400 Populus trichocarpa HOM05D001876 ORTHO05D002002 6.8e-13 77.8 97 46.4
Sc07g0002250 Simmondsia chinensis HOM05D001876 ORTHO05D002002 1.2e-12 77.0 97 46.4
TWI39G0122 Tripterygium wilfordii HOM05D001876 ORTHO05D002002 1.2e-12 77.0 66 66.7
Sp3g11500 Schrenkiella parvula HOM05D001876 ORTHO05D002002 1.5e-12 76.6 59 62.7
vmacro09608 Vaccinium macrocarpon HOM05D001876 ORTHO05D002002 3.4e-12 75.5 54 72.2
Actinidia24799 Actinidia chinensis HOM05D001876 ORTHO05D002002 4.4e-12 75.1 65 66.2
Manes.05G206100 Manihot esculenta HOM05D001876 ORTHO05D002002 1.3e-11 73.6 97 47.4
Ah.14g085010 Amaranthus hybridus HOM05D001876 ORTHO05D002002 1.7e-11 73.2 159 37.1
BcaC05g29191 Brassica carinata HOM05D001876 ORTHO05D002002 1.7e-11 73.2 60 60.0
C05p54620 Brassica napus HOM05D001876 ORTHO05D002002 1.7e-11 73.2 60 60.0
BolC5t34127H Brassica oleracea HOM05D001876 ORTHO05D002002 1.7e-11 73.2 60 60.0
Pp3c15_3440 Physcomitrium patens HOM05D001876 ORTHO05D002002 2.2e-11 72.8 95 45.3
Pp3c15_3450 Physcomitrium patens HOM05D001876 ORTHO05D002002 2.2e-11 72.8 95 45.3
A05p36310 Brassica napus HOM05D001876 ORTHO05D002002 3.7e-11 72.0 57 61.4
BraA05t22432Z Brassica rapa HOM05D001876 ORTHO05D002002 3.7e-11 72.0 57 61.4
ECA240G3156 Erigeron canadensis HOM05D001876 ORTHO05D002002 3.7e-11 72.0 52 67.3
Gohir.A09G067700 Gossypium hirsutum HOM05D001876 ORTHO05D002002 4.8e-11 71.6 95 47.4
Gorai.006G081900 Gossypium raimondii HOM05D001876 ORTHO05D002002 4.8e-11 71.6 95 47.4
Actinidia27240 Actinidia chinensis HOM05D000228 ORTHO05D002002 8.3e-11 70.9 64 64.1
BcaC05g30231 Brassica carinata HOM05D001876 ORTHO05D002002 8.3e-11 70.9 55 61.8
BcaC05g30230 Brassica carinata HOM05D001876 ORTHO05D002002 1.1e-10 70.5 95 44.2
Psat5g163240 Pisum sativum HOM05D001876 ORTHO05D002002 1.4e-10 70.1 95 44.2
Lalb_Chr15g0088371 Lupinus albus HOM05D001876 ORTHO05D002002 1.8e-10 69.7 55 63.6
Actinidia31601 Actinidia chinensis HOM05D001876 ORTHO05D002002 3.1e-10 68.9 89 49.4
Rhsim04G0009400 Rhododendron simsii HOM05D001876 ORTHO05D002002 1.2e-09 67.0 51 68.6
HPP92_026159 Vanilla planifolia HOM05D001876 ORTHO05D002002 2.0e-09 66.2 62 54.8
FAN06G3562 Fragaria x ananassa HOM05D001876 ORTHO05D019192 2.7e-09 65.9 69 60.9
MBI14_g30654_MAGBIO Magnolia biondii HOM05D001876 ORTHO05D002002 2.7e-09 65.9 52 63.5
Sed0006897 Sechium edule HOM05D001876 ORTHO05D002002 3.5e-09 65.5 113 44.2
Pp3c9_4880 Physcomitrium patens HOM05D001876 ORTHO05D002002 5.9e-09 64.7 94 41.5
Thecc.07G005200 Theobroma cacao HOM05D001876 ORTHO05D002002 2.2e-08 62.8 97 43.3
Actinidia03661 Actinidia chinensis HOM05D001876 ORTHO05D002002 5.0e-08 61.6 44 70.5
Aqoxy7G01305 Aquilegia oxysepala HOM05D001876 ORTHO05D002002 5.0e-08 61.6 41 78.0
SGA_v2.0_scaffold8G04429 Striga asiatica HOM05D001876 ORTHO05D002002 5.0e-08 61.6 97 41.2
FAN21G3992 Fragaria x ananassa HOM05D001876 ORTHO05D002002 1.9e-07 59.7 74 55.4
Pp3c3_2660 Physcomitrium patens HOM05D001876 ORTHO05D002002 2.5e-07 59.3 97 36.1
Solyc03g071660.2 Solanum lycopersicum HOM05D001876 ORTHO05D002002 3.2e-07 58.9 64 54.7
FAN11G3414 Fragaria x ananassa HOM05D001876 ORTHO05D002002 4.2e-07 58.5 74 54.1
RcHm_v2.0_Chr4g0386801 Rosa chinensis HOM05D001876 ORTHO05D002002 4.2e-07 58.5 40 82.5
Pp3c11_5850 Physcomitrium patens HOM05D001876 ORTHO05D002002 5.5e-07 58.2 95 33.7
Lsat_1_v5_gn_9_89380 Lactuca sativa HOM05D001876 ORTHO05D002002 7.2e-07 57.8 46 60.9
Duzib235G0083 Durio zibethinus HOM05D001876 ORTHO05D002002 1.2e-06 57.0 95 40.0
CBR_g8647 Chara braunii HOM05D001876 ORTHO05D002002 2.1e-06 56.2 102 40.2
Pp3c7_25280 Physcomitrium patens HOM05D001876 ORTHO05D002002 2.1e-06 56.2 96 32.3
QL08p001531 Quercus lobata HOM05D001876 ORTHO05D002002 4.7e-06 55.1 51 58.8


User provided reference genes

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