Gene: AT3G13300

General Information

Structural Information

  • Species Arabidopsis thaliana
  • Gene Identifier AT3G13300
  • Transcript Identifier AT3G13300.1
  • Gene Type Coding gene
  • Location Chr3 : 4304085-4309949 : positive

Gene Family Information

  • ID HOM05D001876
  • #Genes/#Species 351/97
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid AT3G13300.1
  • symbol VCS
  • full_name VARICOSE
  • uniprot Q9LTT8

Descriptions

  • Description Transducin/WD40 repeat-like superfamily protein
  • Computational description VARICOSE (VCS); FUNCTIONS IN: protein homodimerization activity, nucleotide binding; INVOLVED IN: mRNA catabolic process, deadenylation-independent decapping of nuclear-transcribed mRNA, leaf morphogenesis; LOCATED IN: cytosol, nucleus, cytoplasmic mRNA processing body; EXPRESSED IN: whole plant, guard cell, cultured cell; CONTAINS InterPro DOMAIN/s: WD40 repeat-like-containing domain (InterPro:IPR011046), WD40 repeat 2 (InterPro:IPR019782), WD40-repeat-containing domain (InterPro:IPR017986), WD40 repeat (InterPro:IPR001680), WD40/YVTN repeat-like-containing domain (InterPro:IPR015943), WD40 repeat, subgroup (InterPro:IPR019781); BEST Arabidopsis thaliana protein match is: varicose-related (TAIR:AT3G13290.1); Has 1013 Blast hits to 919 proteins in 280 species: Archae - 4; Bacteria - 227; Metazoa - 270; Fungi - 225; Plants - 138; Viruses - 6; Other Eukaryotes - 143 (source: NCBI BLink).
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Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0031087
IDA
IBA
IEA
Gene Ontologydeadenylation-independent decapping of nuclear-transcribed mRNA1 2
GO:0031087
IEA
InterProdeadenylation-independent decapping of nuclear-transcribed mRNA
GO:0006397
IEA
GOA DatabasemRNA processing
GO:0009791
IMP
Gene Ontologypost-embryonic development3
GO:0006402
IMP
Gene OntologymRNA catabolic process3
GO:0071365
IMP
Gene Ontologycellular response to auxin stimulus4
GO:0010072
IMP
Gene Ontologyprimary shoot apical meristem specification4
GO:0010071
IMP
Gene Ontologyroot meristem specification4
GO:0009965
IMP
Gene Ontologyleaf morphogenesis4

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0042803
IDA, IPI
Gene Ontologyprotein homodimerization activity3
GO:0005515
IPI
Gene Ontologyprotein binding1
GO:0005515
IEA
InterProprotein binding
GO:0003729
IDA
GOA DatabasemRNA binding
GO:0003729
HDA
Gene OntologymRNA binding5

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005737
IEA
GOA Databasecytoplasm
GO:0005634
IDA
GOA Databasenucleus
GO:0005634
ISM
Gene Ontologynucleus
GO:0005829
IDA
GOA Databasecytosol
GO:0000932
IEA
GOA DatabaseP-body
GO:0000932
IDA
IBA
Gene OntologyP-body1 2

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR044938 Enhancer of mRNA-decapping protein 4, conserved C-terminal domain
IPR045152 Enhancer of mRNA-decapping protein 4-like
IPR036322 WD40-repeat-containing domain superfamily
IPR032401 Enhancer of mRNA-decapping protein 4, WD40 repeat region
IPR001680 WD40 repeat
IPR015943 WD40/YVTN repeat-like-containing domain superfamily
Mapman id Description
16.4.2.2.4 RNA processing.RNA surveillance.mRNA deadenylation-dependent decay.mRNA decapping complex.scaffold component VCS