Gene: Pp3c11_5850
General Information
Structural Information
- Species Physcomitrium patens
- Gene Identifier Pp3c11_5850
- Transcript Identifier Pp3c11_5850V3.1
- Gene Type Coding gene
- Location Chr11 : 3772183-3779048 : negative
Gene Family Information
- ID HOM05D001876
- #Genes/#Species 351/97
- Phylogenetic origin
- ID ORTHO05D002002
- #Genes/#Species 328/96
- Phylogenetic origin
Gene Duplication Information
- Block Duplication Block duplicate
Labels
Identifiers
- name Pp3c11_5850V3.1
- pacid 32957164
- alias Pp1s364_54V6
- alias Phypa_98720
- alias Phpat.011G022400
- uniprot A0A2K1JTM5
Descriptions
- Loading (ortholog descriptions from ath)...
Functional Annotation
Biological Process
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0031087 | IBA IEA | GOA Database | deadenylation-independent decapping of nuclear-transcribed mRNA | |
| GO:0031087 | IEA | InterPro | deadenylation-independent decapping of nuclear-transcribed mRNA | |
| GO:0010071 | ISO | PLAZA Integrative Orthology | root meristem specification | AT3G13300 |
| GO:0071365 | ISO | PLAZA Integrative Orthology | cellular response to auxin stimulus | AT3G13300 |
| GO:0010072 | ISO | PLAZA Integrative Orthology | primary shoot apical meristem specification | AT3G13300 |
| GO:0009791 | ISO | PLAZA Integrative Orthology | post-embryonic development | AT3G13300 |
| GO:0006402 | ISO | PLAZA Integrative Orthology | mRNA catabolic process | AT3G13300 |
| GO:0009965 | ISO | PLAZA Integrative Orthology | leaf morphogenesis | AT3G13300 |
Molecular Function
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0005515 | IEA | InterPro | protein binding | |
| GO:0042803 | ISO | PLAZA Integrative Orthology | protein homodimerization activity | AT3G13300 |
| GO:0003729 | ISO | PLAZA Integrative Orthology | mRNA binding | AT3G13300 |
Cellular Component
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0000932 | IBA IEA | GOA Database | P-body | |
| GO:0005634 | ISO | PLAZA Integrative Orthology | nucleus | AT3G13300 |
| GO:0005829 | ISO | PLAZA Integrative Orthology | cytosol | AT3G13300 |
Color Legend
| Experimental Evidence |
| Computational Reviewed Evidence |
| Electronic Evidence |
| InterPro | Description |
|---|---|
| IPR015943 | WD40/YVTN repeat-like-containing domain superfamily |
| IPR032401 | Enhancer of mRNA-decapping protein 4, WD40 repeat region |
| IPR036322 | WD40-repeat-containing domain superfamily |
| IPR045152 | Enhancer of mRNA-decapping protein 4-like |
| IPR044938 | Enhancer of mRNA-decapping protein 4, conserved C-terminal domain |
| IPR001680 | WD40 repeat |
| Mapman id | Description |
|---|---|
| 35.1 | not assigned.annotated |