Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN21G1725 Fragaria x ananassa HOM05D005980 ORTHO05D007618 2.2e-310 1068.1 558 100.0
FAN11G3650 Fragaria x ananassa HOM05D005980 ORTHO05D007618 6.2e-305 1050.0 558 98.0
FvH4_3g05000 Fragaria vesca HOM05D005980 ORTHO05D007618 7.9e-300 1033.1 558 97.0
RcHm_v2.0_Chr5g0014971 Rosa chinensis HOM05D005980 ORTHO05D007618 1.4e-285 985.7 558 92.1
FAN16G3332 Fragaria x ananassa HOM05D005980 ORTHO05D007618 6.7e-283 976.9 521 98.3
FAN25G0178 Fragaria x ananassa HOM05D005980 ORTHO05D007618 2.0e-282 975.3 585 90.1
Prupe.4G086000 Prunus persica HOM05D005980 ORTHO05D007618 1.8e-248 862.4 563 80.1
MD10G1257800 Malus domestica HOM05D005980 ORTHO05D007618 5.7e-242 840.9 564 78.2
GSVIVG01021555001 Vitis vinifera HOM05D005980 ORTHO05D007618 4.4e-218 761.5 524 74.4
CSS0007144 Camellia sinensis var. sinensis HOM05D005980 ORTHO05D007618 1.2e-212 743.4 563 68.7
CSS0019737 Camellia sinensis var. sinensis HOM05D005980 ORTHO05D007618 2.1e-212 742.7 563 68.7
Thecc.06G143900 Theobroma cacao HOM05D005980 ORTHO05D007618 6.2e-212 741.1 531 71.9
Dinv21517 Davidia involucrata HOM05D005980 ORTHO05D007618 8.9e-211 737.3 563 69.3
CiPaw.09G119300 Carya illinoinensis HOM05D005980 ORTHO05D007618 1.5e-210 736.5 564 69.9
DCAR_003883 Daucus carota HOM05D005980 ORTHO05D007618 1.5e-210 736.5 514 72.4
CsaV3_6G052070 Cucumis sativus L. HOM05D005980 ORTHO05D007618 6.4e-209 731.1 565 67.6
Oeu032723.1 Olea europaea HOM05D005980 ORTHO05D007618 6.4e-209 731.1 562 69.0
ClCG01G024920 Citrullus lanatus HOM05D005980 ORTHO05D007618 8.4e-209 730.7 565 68.3
PGR102G3344 Punica granatum HOM05D005980 ORTHO05D007618 1.1e-208 730.3 530 72.3
Actinidia13438 Actinidia chinensis HOM05D005980 ORTHO05D007618 7.8e-207 724.2 567 68.8
Nitab4.5_0000869g0050 Nicotiana tabacum HOM05D005980 ORTHO05D007618 7.8e-207 724.2 558 67.7
Eucgr.D00262 Eucalyptus grandis HOM05D005980 ORTHO05D007618 1.3e-206 723.4 580 66.4
Ciclev10014878m.g Citrus clementina HOM05D005980 ORTHO05D007618 5.1e-206 721.5 565 67.8
Haze_05690 Corylus avellana HOM05D005980 ORTHO05D007618 8.7e-206 720.7 621 63.4
MELO3C007103.2 Cucumis melo HOM05D005980 ORTHO05D007618 4.3e-205 718.4 585 65.5
Solyc02g070390.3 Solanum lycopersicum HOM05D005980 ORTHO05D007618 5.6e-205 718.0 563 67.1
Sopen02g019470 Solanum pennellii HOM05D005980 ORTHO05D007618 5.6e-205 718.0 563 67.0
Gohir.D05G148400 Gossypium hirsutum HOM05D005980 ORTHO05D007618 9.6e-205 717.2 532 70.5
PGSC0003DMG402021097 Solanum tuberosum HOM05D005980 ORTHO05D007618 9.6e-205 717.2 563 66.6
Sed0023515 Sechium edule HOM05D005980 ORTHO05D007618 1.3e-204 716.8 566 67.1
Nn3g20318 Nelumbo nucifera HOM05D005980 ORTHO05D007618 6.2e-204 714.5 565 67.4
CANSAT35G0447 Cannabis sativa HOM05D005980 ORTHO05D007618 8.1e-204 714.1 568 67.3
COL.COLO4_31005 Corchorus olitorius HOM05D005980 ORTHO05D007618 4.4e-202 708.4 537 69.8
TAR626G0855 Trochodendron aralioides HOM05D005980 ORTHO05D007618 7.6e-202 707.6 565 66.4
Potri.001G358400 Populus trichocarpa HOM05D005980 ORTHO05D007618 4.9e-201 704.9 564 66.1
TWI73G1267 Tripterygium wilfordii HOM05D005980 ORTHO05D007618 4.9e-201 704.9 525 69.0
Sabra16G0236200 Salix brachista HOM05D005980 ORTHO05D007618 4.2e-200 701.8 581 65.4
Hma1.2p1_0586F.1_g183830 Hydrangea macrophylla HOM05D005980 ORTHO05D007618 1.2e-199 700.3 459 77.8
QL05p054997 Quercus lobata HOM05D005980 ORTHO05D007618 1.6e-199 699.9 566 67.0
EL10Ac1g01827 Beta vulgaris HOM05D005980 ORTHO05D007618 3.5e-199 698.7 462 76.2
Sed0012577 Sechium edule HOM05D005980 ORTHO05D007618 6.0e-199 698.0 566 66.1
MSTRG.16268 Avicennia marina HOM05D005980 ORTHO05D007618 3.9e-198 695.3 568 65.1
Peaxi162Scf00670g00346 Petunia axillaris HOM05D005980 ORTHO05D007618 6.6e-198 694.5 505 70.7
Aqoxy4G00005 Aquilegia oxysepala HOM05D005980 ORTHO05D007618 4.8e-196 688.3 508 68.9
Dinv32210 Davidia involucrata HOM05D005980 ORTHO05D007618 1.8e-195 686.4 447 78.7
Cc09_g08730 Coffea canephora HOM05D005980 ORTHO05D007618 2.4e-195 686.0 569 64.1
Manes.15G125300 Manihot esculenta HOM05D005980 ORTHO05D007618 5.8e-194 681.4 453 76.2
Migut.M01863 Erythranthe guttata HOM05D005980 ORTHO05D007618 1.3e-193 680.2 567 64.0
PSO675G5271 Papaver somniferum HOM05D005980 ORTHO05D007618 4.9e-193 678.3 560 64.5
Aa31LG10G6710 Aethionema arabicum HOM05D005980 ORTHO05D007618 8.4e-193 677.6 563 64.8
Lj1A1168T68 Lonicera japonica HOM05D005980 ORTHO05D007618 8.4e-193 677.6 527 67.6
BcaC02g11540 Brassica carinata HOM05D005980 ORTHO05D007618 2.4e-192 676.0 563 64.8
BolC4t23002H Brassica oleracea HOM05D005980 ORTHO05D007618 2.4e-192 676.0 563 64.8
Gohir.A05G146100 Gossypium hirsutum HOM05D005980 ORTHO05D007618 2.4e-192 676.0 532 67.9
A05p11020 Brassica napus HOM05D005980 ORTHO05D007618 4.2e-192 675.2 563 64.3
PSO541G1780 Papaver somniferum HOM05D005980 ORTHO05D007618 5.4e-192 674.9 560 64.1
THA.LOC104820671 Tarenaya hassleriana HOM05D005980 ORTHO05D007618 5.4e-192 674.9 563 63.8
C04p14140 Brassica napus HOM05D005980 ORTHO05D007618 9.3e-192 674.1 563 64.7
BraA05t20047Z Brassica rapa HOM05D005980 ORTHO05D007618 1.2e-191 673.7 563 63.9
Medtr2g018740 Medicago truncatula HOM05D005980 ORTHO05D007618 3.5e-191 672.2 553 65.5
Carub.0004s1633 Capsella rubella HOM05D005980 ORTHO05D007618 4.6e-191 671.8 565 65.0
Gorai.009G152600 Gossypium raimondii HOM05D005980 ORTHO05D007618 4.6e-191 671.8 501 69.9
AUR62028384 Chenopodium quinoa HOM05D005980 ORTHO05D007618 6.0e-191 671.4 567 64.6
Psat1g191560 Pisum sativum HOM05D005980 ORTHO05D007618 1.0e-190 670.6 554 65.3
AL4G30630 Arabidopsis lyrata HOM05D005980 ORTHO05D007618 1.3e-190 670.2 565 65.8
AUR62025366 Chenopodium quinoa HOM05D005980 ORTHO05D007618 1.3e-190 670.2 567 64.2
AT2G34640 Arabidopsis thaliana HOM05D005980 ORTHO05D007618 3.9e-190 668.7 560 64.3
Lj6g0019056 Lotus japonicus HOM05D005980 ORTHO05D007618 1.1e-189 667.2 521 67.4
CARHR128740 Cardamine hirsuta HOM05D005980 ORTHO05D007618 1.6e-188 663.3 563 63.9
Thhalv10016502m.g Eutrema salsugineum HOM05D005980 ORTHO05D007618 6.2e-188 661.4 566 64.3
SalBow8G1809 Salvia bowleyana HOM05D005980 ORTHO05D007618 1.8e-187 659.8 561 63.3
Nitab4.5_0005963g0020 Nicotiana tabacum HOM05D005980 ORTHO05D007618 2.4e-187 659.4 563 63.2
TPR.G26225 Trifolium pratense HOM05D005980 ORTHO05D007618 2.4e-187 659.4 559 63.1
Glyma.13G221300 Glycine max HOM05D005980 ORTHO05D007618 7.6e-186 654.4 509 66.4
SGA_v2.0_scaffold51G18642 Striga asiatica HOM05D005980 ORTHO05D007618 7.6e-186 654.4 559 63.3
Phvul.006G168100 Phaseolus vulgaris HOM05D005980 ORTHO05D007618 3.8e-185 652.1 498 66.9
ATR1098G083 Amborella trichopoda HOM05D005980 ORTHO05D007618 4.2e-184 648.7 536 63.8
arahy.Tifrunner.gnm1.ann1.G1ZF0U Arachis hypogaea HOM05D005980 ORTHO05D007618 1.8e-182 643.3 536 64.4
Rhsim13G0118300 Rhododendron simsii HOM05D005980 ORTHO05D007618 2.3e-182 642.9 542 64.9
Sp4g16910 Schrenkiella parvula HOM05D005980 ORTHO05D007618 2.3e-182 642.9 566 62.9
Lj2C323G3 Lonicera japonica HOM05D005980 ORTHO05D007618 3.9e-182 642.1 519 66.3
arahy.Tifrunner.gnm1.ann1.PI6078 Arachis hypogaea HOM05D005980 ORTHO05D007618 8.7e-182 641.0 536 64.2
VMungo0540G0170 Vigna mungo HOM05D005980 ORTHO05D007618 4.0e-179 632.1 497 66.2
Ca_00513_v3 Cicer arietinum L. HOM05D005980 ORTHO05D007618 9.0e-179 630.9 464 71.8
Lalb_Chr18g0055171 Lupinus albus HOM05D005980 ORTHO05D007618 9.0e-179 630.9 524 64.3
HanXRQChr10g0301191 Helianthus annuus HOM05D005980 ORTHO05D007618 2.7e-175 619.4 532 61.8
Lsat_1_v5_gn_9_33800 Lactuca sativa HOM05D005980 ORTHO05D007618 8.7e-174 614.4 528 61.6
Sc05g0005970 Simmondsia chinensis HOM05D005980 ORTHO05D007618 6.3e-172 608.2 485 65.4
BcaNung07262 Brassica carinata HOM05D005980 ORTHO05D007618 2.2e-169 599.7 439 71.5
Ah.12g059810 Amaranthus hybridus HOM05D005980 ORTHO05D007618 4.3e-165 585.5 493 63.1
unitig_578.g16128 Utricularia gibba HOM05D005980 ORTHO05D007618 1.5e-162 577.0 523 58.9
vmacro03427 Vaccinium macrocarpon HOM05D005980 ORTHO05D007618 7.7e-162 574.7 441 67.6
ECA247G3302 Erigeron canadensis HOM05D005980 ORTHO05D007618 8.8e-150 534.6 468 59.6
Os01g0769900 Oryza sativa ssp. japonica HOM05D005980 ORTHO05D007618 5.0e-145 518.8 485 59.0
Zm00001eb152010 Zea mays HOM05D005980 ORTHO05D007618 6.8e-142 508.4 485 57.1
MD05G1278700 Malus domestica HOM05D005980 ORTHO05D007618 3.3e-120 436.4 318 74.5
HPP92_001893 Vanilla planifolia HOM05D005980 ORTHO05D007618 4.6e-98 362.8 314 58.6
Hma1.2p1_0586F.1_g183820 Hydrangea macrophylla HOM05D005980 ORTHO05D007618 1.7e-89 334.3 286 62.9
AagrBONN_evm.TU.Sc2ySwM_228.94 Anthoceros agrestis HOM05D005980 ORTHO05D007618 8.1e-87 325.5 439 44.0
MBI02_g18932_MAGBIO Magnolia biondii HOM05D005980 ORTHO05D007618 5.3e-86 322.8 291 58.8
Cpa.g.sc17.57 Carica papaya HOM05D005980 ORTHO05D007618 3.8e-84 316.6 299 59.2
CDE01G0059 Ceratophyllum demersum HOM05D005980 ORTHO05D007618 2.3e-81 307.4 269 60.6
Cpa.g.sc17.56 Carica papaya HOM05D005980 ORTHO05D007618 2.6e-77 293.9 167 81.4
Mapoly0061s0053 Marchantia polymorpha HOM05D005980 ORTHO05D007618 5.8e-77 292.7 484 37.8
Cpa.g.c47879 Carica papaya HOM05D005980 ORTHO05D007618 1.9e-72 277.7 192 71.4
Pp3c10_12300 Physcomitrium patens HOM05D005980 ORTHO05D007618 5.8e-69 266.2 370 41.4
Pp3c3_26950 Physcomitrium patens HOM05D005980 ORTHO05D007618 3.0e-65 253.8 474 36.3
Hma1.2p1_0581F.1_g182930 Hydrangea macrophylla HOM05D005980 ORTHO05D007618 2.7e-58 230.7 147 79.6
SGA_v2.0_scaffold230G43391 Striga asiatica HOM05D005980 ORTHO05D007618 1.6e-55 221.5 125 80.0
arahy.Tifrunner.gnm1.ann1.D5DAI6 Arachis hypogaea HOM05D005980 ORTHO05D007618 8.2e-55 219.2 197 56.3
SGA_v2.0_scaffold6G03478 Striga asiatica HOM05D005980 ORTHO05D007618 4.1e-54 216.9 125 80.8
HPP92_001892 Vanilla planifolia HOM05D005980 ORTHO05D007618 1.1e-51 208.8 165 66.7
Lsat_1_v5_gn_1_94041 Lactuca sativa HOM05D005980 ORTHO05D007618 5.7e-48 196.4 164 59.1
CBR_g48045 Chara braunii HOM05D005980 ORTHO05D007618 1.3e-44 185.3 249 40.2
MD05G1278800 Malus domestica HOM05D005980 ORTHO05D007618 3.2e-35 154.1 80 87.5
Cpa.g.sc17.55 Carica papaya HOM05D005980 ORTHO05D007618 1.1e-32 145.6 106 73.6
SEGI_30301 Sequoiadendron giganteum HOM05D005980 ORTHO05D007618 2.0e-29 134.8 225 39.6
HanXRQChr10g0301121 Helianthus annuus HOM05D005980 ORTHO05D007618 4.4e-24 117.1 91 60.4
Glyma.15G091200 Glycine max HOM05D005980 ORTHO05D007618 1.4e-22 112.1 123 53.7
MBI02_g26594_MAGBIO Magnolia biondii HOM05D005980 ORTHO05D007618 4.1e-22 110.5 81 74.1
Haze_05663 Corylus avellana HOM05D005980 ORTHO05D007618 1.3e-20 105.5 112 54.5
MD05G1278900 Malus domestica HOM05D005980 ORTHO05D007618 1.6e-18 98.6 67 79.1
arahy.Tifrunner.gnm1.ann1.MPA65D Arachis hypogaea HOM05D005980 ORTHO05D007618 3.6e-18 97.4 53 81.1
vmacro03428 Vaccinium macrocarpon HOM05D005980 ORTHO05D007618 3.6e-18 97.4 100 62.0
Actinidia33672 Actinidia chinensis HOM05D005980 ORTHO05D007618 3.4e-16 90.9 76 64.5
Lsat_1_v5_gn_1_94021 Lactuca sativa HOM05D005980 ORTHO05D007618 4.4e-16 90.5 139 48.2
Lsat_1_v5_gn_7_71901 Lactuca sativa HOM05D002457 ORTHO05D005750 3.1e-14 84.3 92 48.9
MSTRG.16269 Avicennia marina HOM05D005980 ORTHO05D007618 3.8e-12 77.4 45 68.9
Actinidia33673 Actinidia chinensis HOM05D005980 ORTHO05D007618 2.8e-10 71.2 135 43.0
Cpa.g.c48158 Carica papaya HOM05D005980 ORTHO05D007618 7.5e-08 63.2 32 93.8


User provided reference genes

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