Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN20G2488 Fragaria x ananassa HOM05D006408 ORTHO05D008038 2.3e-182 642.1 331 100.0
FAN27G1901 Fragaria x ananassa HOM05D006408 ORTHO05D008038 1.2e-173 613.2 331 96.1
FAN24G2159 Fragaria x ananassa HOM05D006408 ORTHO05D008038 2.0e-173 612.5 331 96.4
RcHm_v2.0_Chr6g0296711 Rosa chinensis HOM05D006408 ORTHO05D008038 1.2e-157 560.1 336 83.9
FvH4_2g27850 Fragaria vesca HOM05D006408 ORTHO05D008038 1.3e-153 546.6 331 87.3
MD08G1159400 Malus domestica HOM05D006408 ORTHO05D008038 2.3e-145 519.2 342 79.5
Prupe.1G489500 Prunus persica HOM05D006408 ORTHO05D008038 1.5e-144 516.5 342 77.8
FAN15G0171 Fragaria x ananassa HOM05D006408 ORTHO05D008038 7.1e-139 497.7 253 96.4
Cfa018129 Carpinus fangiana HOM05D006408 ORTHO05D008038 4.9e-132 474.9 338 72.2
CANSAT25G1301 Cannabis sativa HOM05D006408 ORTHO05D008038 5.4e-131 471.5 340 72.4
Gorai.005G087700 Gossypium raimondii HOM05D006408 ORTHO05D008038 3.5e-130 468.8 336 70.2
Cpa.g.sc26.317 Carica papaya HOM05D006408 ORTHO05D008038 2.3e-129 466.1 329 72.9
Thecc.08G133100 Theobroma cacao HOM05D006408 ORTHO05D008038 6.6e-129 464.5 337 70.6
CiPaw.16G022700 Carya illinoinensis HOM05D006408 ORTHO05D008038 3.3e-128 462.2 331 71.9
Sp1g19130 Schrenkiella parvula HOM05D006408 ORTHO05D008038 3.6e-127 458.8 297 74.1
Aqoxy5G02393 Aquilegia oxysepala HOM05D006408 ORTHO05D008038 1.4e-126 456.8 340 70.3
CARHR021960 Cardamine hirsuta HOM05D006408 ORTHO05D008038 1.2e-125 453.8 322 69.6
ClCG11G015980 Citrullus lanatus HOM05D006408 ORTHO05D008038 1.5e-125 453.4 336 68.8
THA.LOC104814021 Tarenaya hassleriana HOM05D006408 ORTHO05D008038 2.6e-125 452.6 278 76.6
MELO3C010512.2 Cucumis melo HOM05D006408 ORTHO05D008038 7.6e-125 451.1 340 68.2
TAR628G0457 Trochodendron aralioides HOM05D006408 ORTHO05D008038 2.2e-124 449.5 334 69.2
Manes.02G168400 Manihot esculenta HOM05D006408 ORTHO05D008038 2.9e-124 449.1 326 68.4
EL10Ac1g01346 Beta vulgaris HOM05D006408 ORTHO05D008038 3.8e-124 448.7 325 69.2
A06p17690 Brassica napus HOM05D006408 ORTHO05D008038 6.4e-124 448.0 291 73.9
BraA06t24861Z Brassica rapa HOM05D006408 ORTHO05D008038 6.4e-124 448.0 291 73.9
CsaV3_4G028270 Cucumis sativus L. HOM05D006408 ORTHO05D008038 8.4e-124 447.6 338 67.8
Eucgr.A00239 Eucalyptus grandis HOM05D006408 ORTHO05D008038 1.1e-123 447.2 338 72.8
Phvul.009G129900 Phaseolus vulgaris HOM05D006408 ORTHO05D008038 1.4e-123 446.8 332 68.7
Sopen04g025710 Solanum pennellii HOM05D006408 ORTHO05D008038 1.9e-123 446.4 319 69.0
C05p20590 Brassica napus HOM05D006408 ORTHO05D008038 2.4e-123 446.0 288 74.3
BolC5t30757H Brassica oleracea HOM05D006408 ORTHO05D008038 2.4e-123 446.0 288 74.3
CSS0036755 Camellia sinensis var. sinensis HOM05D006408 ORTHO05D008038 2.4e-123 446.0 329 72.9
Atru.chr13.1568 Acer truncatum HOM05D006408 ORTHO05D008038 3.2e-123 445.7 330 67.9
Glyma.06G117500 Glycine max HOM05D006408 ORTHO05D008038 7.1e-123 444.5 329 67.2
Solyc04g057870.3 Solanum lycopersicum HOM05D006408 ORTHO05D008038 9.3e-123 444.1 319 68.3
MBI03_g48069_MAGBIO Magnolia biondii HOM05D006408 ORTHO05D008038 2.7e-122 442.6 347 66.9
Nitab4.5_0001168g0170 Nicotiana tabacum HOM05D006408 ORTHO05D008038 2.7e-122 442.6 333 68.8
Glyma.04G087000 Glycine max HOM05D006408 ORTHO05D008038 3.5e-122 442.2 323 69.3
PGR083G0137 Punica granatum HOM05D006408 ORTHO05D008038 4.6e-122 441.8 309 70.9
Aa31LG7G5580 Aethionema arabicum HOM05D006408 ORTHO05D008038 6.0e-122 441.4 337 66.8
Potri.002G078900 Populus trichocarpa HOM05D006408 ORTHO05D008038 7.9e-122 441.0 331 67.4
PGSC0003DMG400028061 Solanum tuberosum HOM05D006408 ORTHO05D008038 7.9e-122 441.0 336 69.6
AL1G34740 Arabidopsis lyrata HOM05D006408 ORTHO05D008038 1.7e-121 439.9 297 72.1
Actinidia15213 Actinidia chinensis HOM05D006408 ORTHO05D008038 3.0e-121 439.1 316 73.1
Hma1.2p1_1121F.1_g259280 Hydrangea macrophylla HOM05D006408 ORTHO05D008038 2.5e-120 436.0 338 69.5
PSO170G2303 Papaver somniferum HOM05D006408 ORTHO05D008038 3.3e-120 435.6 296 72.0
Ciclev10001886m.g Citrus clementina HOM05D006408 ORTHO05D008038 4.3e-120 435.3 337 70.6
PSO017G3385 Papaver somniferum HOM05D006408 ORTHO05D008038 4.3e-120 435.3 300 71.3
Ca_16607_v3 Cicer arietinum L. HOM05D006408 ORTHO05D008038 5.6e-120 434.9 333 67.3
Peaxi162Scf00066g00222 Petunia axillaris HOM05D006408 ORTHO05D008038 5.6e-120 434.9 329 69.9
CAN.G288.5 Capsicum annuum HOM05D006408 ORTHO05D008038 7.4e-120 434.5 335 65.7
VMungo1309G0712 Vigna mungo HOM05D006408 ORTHO05D008038 1.3e-119 433.7 332 66.9
Nn1g08961 Nelumbo nucifera HOM05D006408 ORTHO05D008038 2.8e-119 432.6 336 68.2
Lalb_Chr08g0241101 Lupinus albus HOM05D006408 ORTHO05D008038 8.1e-119 431.0 339 65.2
Sed0021255 Sechium edule HOM05D006408 ORTHO05D008038 8.1e-119 431.0 341 67.7
AT1G21600 Arabidopsis thaliana HOM05D006408 ORTHO05D008038 1.4e-118 430.3 322 69.6
BcaC05g26077 Brassica carinata HOM05D006408 ORTHO05D008038 4.0e-118 428.7 288 75.3
Cc10_g13760 Coffea canephora HOM05D006408 ORTHO05D008038 1.2e-117 427.2 338 68.6
Medtr3g088605 Medicago truncatula HOM05D006408 ORTHO05D008038 2.6e-117 426.0 326 66.6
Gohir.D02G078200 Gossypium hirsutum HOM05D006408 ORTHO05D008038 3.4e-117 425.6 336 67.6
unitig_52.g17545 Utricularia gibba HOM05D006408 ORTHO05D008038 9.9e-117 424.1 284 73.9
Psat5g084760 Pisum sativum HOM05D006408 ORTHO05D008038 2.2e-116 422.9 296 70.6
CDE06G0572 Ceratophyllum demersum HOM05D006408 ORTHO05D008038 3.8e-116 422.2 286 71.7
ATR0568G086 Amborella trichopoda HOM05D006408 ORTHO05D008038 1.4e-115 420.2 314 66.2
DCAR_003587 Daucus carota HOM05D006408 ORTHO05D008038 4.6e-114 415.2 256 75.8
TPR.G28811 Trifolium pratense HOM05D006408 ORTHO05D008038 6.0e-114 414.8 327 66.1
arahy.Tifrunner.gnm1.ann1.8X384Y Arachis hypogaea HOM05D006408 ORTHO05D008038 1.0e-113 414.1 338 66.3
arahy.Tifrunner.gnm1.ann1.227FW7 Arachis hypogaea HOM05D006408 ORTHO05D008038 1.8e-113 413.3 337 66.5
Oeu047179.2 Olea europaea HOM05D006408 ORTHO05D008038 2.3e-113 412.9 339 66.1
MSTRG.22398 Avicennia marina HOM05D006408 ORTHO05D008038 6.7e-113 411.4 327 66.1
BcaB07g32155 Brassica carinata HOM05D006408 ORTHO05D008038 3.7e-111 405.6 317 68.5
CDE04G0676 Ceratophyllum demersum HOM05D006408 ORTHO05D008038 1.1e-110 404.1 273 71.4
Lj4A682G50 Lonicera japonica HOM05D006408 ORTHO05D008038 1.1e-110 404.1 248 77.0
GSVIVG01008807001 Vitis vinifera HOM05D006408 ORTHO05D008038 1.8e-110 403.3 222 84.2
Carub.0001s2103 Capsella rubella HOM05D006408 ORTHO05D008038 3.1e-110 402.5 225 82.7
HanXRQChr02g0045521 Helianthus annuus HOM05D006408 ORTHO05D008038 1.5e-109 400.2 349 64.8
Lsat_1_v5_gn_1_7780 Lactuca sativa HOM05D006408 ORTHO05D008038 4.5e-109 398.7 344 63.7
Migut.N03260 Erythranthe guttata HOM05D006408 ORTHO05D008038 3.8e-108 395.6 321 67.0
HPP92_009911 Vanilla planifolia HOM05D006408 ORTHO05D008038 8.4e-108 394.4 269 68.8
QL09p032485 Quercus lobata HOM05D006408 ORTHO05D008038 1.1e-107 394.0 330 67.3
ECA236G3303 Erigeron canadensis HOM05D006408 ORTHO05D008038 3.5e-106 389.0 342 63.7
Lj1g0002290 Lotus japonicus HOM05D006408 ORTHO05D008038 8.7e-105 384.4 331 60.4
Ah.10g032560 Amaranthus hybridus HOM05D006408 ORTHO05D008038 5.0e-100 368.6 330 60.6
BolC8t49731H Brassica oleracea HOM05D006408 ORTHO05D008038 8.4e-100 367.9 341 58.9
Gohir.A02G071000 Gossypium hirsutum HOM05D006408 ORTHO05D008038 1.4e-99 367.1 333 61.6
A08p28910 Brassica napus HOM05D006408 ORTHO05D008038 1.9e-96 356.7 206 81.1
Hund17341 Selenicereus undatus HOM05D006408 ORTHO05D008038 3.4e-93 345.9 299 64.9
Os11g0110100 Oryza sativa ssp. japonica HOM05D006408 ORTHO05D008038 1.1e-91 340.9 227 70.0
Os12g0110400 Oryza sativa ssp. japonica HOM05D006408 ORTHO05D008038 1.1e-91 340.9 227 70.0
Zm00001eb195160 Zea mays HOM05D006408 ORTHO05D008038 1.4e-91 340.5 257 63.0
Thhalv10007813m.g Eutrema salsugineum HOM05D006408 ORTHO05D008038 5.5e-91 338.6 228 73.2
SGA_v2.0_scaffold25G11139 Striga asiatica HOM05D006408 ORTHO05D008038 9.4e-91 337.8 364 52.5
Nitab4.5_0003978g0010 Nicotiana tabacum HOM05D006408 ORTHO05D008038 6.7e-89 331.6 265 67.9
Rhsim06G0091400 Rhododendron simsii HOM05D006408 ORTHO05D008038 1.7e-84 317.0 491 42.4
AUR62013426 Chenopodium quinoa HOM05D006408 ORTHO05D008038 2.9e-84 316.2 325 53.8
AUR62007717 Chenopodium quinoa HOM05D006408 ORTHO05D008038 1.1e-83 314.3 325 53.8
SEGI_15088 Sequoiadendron giganteum HOM05D006408 ORTHO05D008038 1.5e-80 303.9 220 62.7
Sc26g0002930 Simmondsia chinensis HOM05D006408 ORTHO05D008038 1.7e-79 300.4 263 62.0
C08p20930 Brassica napus HOM05D006408 ORTHO05D008038 6.5e-76 288.5 255 60.0
Mapoly0008s0219 Marchantia polymorpha HOM05D006408 ORTHO05D008038 1.6e-74 283.9 280 48.6
vmacro20822 Vaccinium macrocarpon HOM05D006408 ORTHO05D008038 2.6e-72 276.6 167 77.2
Duzib093G1884 Durio zibethinus HOM05D006408 ORTHO05D008038 2.8e-71 273.1 336 53.0
COL.COLO4_06961 Corchorus olitorius HOM05D006408 ORTHO05D008038 3.7e-71 272.7 232 67.7
Pp3c1_1000 Physcomitrium patens HOM05D006408 ORTHO05D008038 4.1e-70 269.2 256 52.7
CsaV3_5G019980 Cucumis sativus L. HOM05D006408 ORTHO05D008038 5.2e-65 252.3 215 58.6
BraA08t34821Z Brassica rapa HOM05D006408 ORTHO05D008038 2.8e-63 246.5 255 52.5
CsaV3_UNG224650 Cucumis sativus L. HOM05D006408 ORTHO05D008038 2.8e-63 246.5 208 60.6
SMO146G0302 Selaginella moellendorffii HOM05D006408 ORTHO05D008038 1.6e-58 230.7 205 53.7
MBI03_g28486_MAGBIO Magnolia biondii HOM05D006408 ORTHO05D008038 6.8e-57 225.3 247 52.6
SalBow2G2951 Salvia bowleyana HOM05D006408 ORTHO05D008038 1.2e-56 224.6 224 61.6
Dinv14691 Davidia involucrata HOM05D006408 ORTHO05D008038 3.1e-54 216.5 195 63.6
MBI03_g39652_MAGBIO Magnolia biondii HOM05D006408 ORTHO05D008038 3.4e-48 196.4 159 64.8
Sabra02G0061800 Salix brachista HOM05D006408 ORTHO05D008038 2.9e-39 166.8 97 77.3
Aqoxy219s001 Aquilegia oxysepala HOM05D006408 ORTHO05D008038 1.3e-36 157.9 109 69.7
CBR_g40143 Chara braunii HOM05D006408 ORTHO05D008038 5.8e-32 142.5 175 40.0
CsaV3_5G018920 Cucumis sativus L. HOM05D006408 ORTHO05D008038 3.5e-29 133.3 155 48.4
BolC5t30909H Brassica oleracea HOM05D006408 ORTHO05D008038 4.7e-26 122.9 62 88.7
Actinidia21278 Actinidia chinensis HOM05D006408 ORTHO05D008038 2.1e-21 107.5 105 53.3
AagrBONN_evm.TU.Sc2ySwM_344.4901 Anthoceros agrestis HOM05D006408 ORTHO05D008038 1.0e-20 105.1 78 65.4
MBI14_g28586_MAGBIO Magnolia biondii HOM05D007982 ORTHO05D010255 7.1e-14 82.4 43 88.4
CsaV3_UNG111870 Cucumis sativus L. HOM05D006408 ORTHO05D008038 6.2e-10 69.3 68 54.4
CsaV3_UNG115880 Cucumis sativus L. HOM05D006408 ORTHO05D008038 6.2e-10 69.3 68 54.4
Actinidia21279 Actinidia chinensis HOM05D006408 ORTHO05D008038 2.0e-08 64.3 161 37.3


User provided reference genes

Program Settings