Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN19G3054 Fragaria x ananassa HOM05D005339 ORTHO05D006561 4.8e-156 554.7 329 100.0
FAN28G0542 Fragaria x ananassa HOM05D005339 ORTHO05D006561 9.8e-133 477.2 365 78.9
FAN28G2786 Fragaria x ananassa HOM05D005339 ORTHO05D006561 9.8e-133 477.2 365 78.9
FAN23G1071 Fragaria x ananassa HOM05D005339 ORTHO05D006561 1.2e-130 470.3 338 82.2
FvH4_1g25110 Fragaria vesca HOM05D005339 ORTHO05D006561 1.9e-123 446.4 340 85.9
RcHm_v2.0_Chr2g0122771 Rosa chinensis HOM05D005339 ORTHO05D006561 7.3e-120 434.5 340 78.8
Prupe.7G010600 Prunus persica HOM05D005339 ORTHO05D006561 2.9e-116 422.5 339 76.1
Eucgr.I01375 Eucalyptus grandis HOM05D005339 ORTHO05D006561 2.4e-115 419.5 340 75.6
Ciclev10028803m.g Citrus clementina HOM05D005339 ORTHO05D006561 7.1e-115 417.9 339 71.4
Thecc.02G066900 Theobroma cacao HOM05D005339 ORTHO05D006561 7.8e-114 414.5 340 75.6
Gohir.A03G203200 Gossypium hirsutum HOM05D005339 ORTHO05D006561 3.9e-113 412.1 337 73.3
Gorai.005G252300 Gossypium raimondii HOM05D005339 ORTHO05D006561 3.9e-113 412.1 337 73.3
MD14G1006100 Malus domestica HOM05D005339 ORTHO05D006561 8.7e-113 411.0 338 73.1
CANSAT25G3263 Cannabis sativa HOM05D005339 ORTHO05D006561 1.1e-112 410.6 339 75.2
Gohir.D02G224500 Gossypium hirsutum HOM05D005339 ORTHO05D006561 1.1e-112 410.6 337 73.0
Actinidia20485 Actinidia chinensis HOM05D005339 ORTHO05D006561 1.9e-112 409.8 339 73.7
PGR142G1539 Punica granatum HOM05D005339 ORTHO05D006561 3.3e-112 409.1 339 73.5
arahy.Tifrunner.gnm1.ann1.RMHT0B Arachis hypogaea HOM05D005339 ORTHO05D006561 9.6e-112 407.5 339 74.9
Manes.04G078200 Manihot esculenta HOM05D005339 ORTHO05D006561 9.6e-112 407.5 339 74.9
Glyma.05G234700 Glycine max HOM05D005339 ORTHO05D006561 1.2e-111 407.1 339 73.2
MD12G1008800 Malus domestica HOM05D005339 ORTHO05D006561 1.2e-111 407.1 339 73.2
Potri.009G129700 Populus trichocarpa HOM05D005339 ORTHO05D006561 1.2e-111 407.1 337 72.7
Lalb_Chr11g0072011 Lupinus albus HOM05D005339 ORTHO05D006561 1.6e-111 406.8 339 73.5
CsaV3_2G015710 Cucumis sativus L. HOM05D005339 ORTHO05D006561 2.1e-111 406.4 339 74.3
THA.LOC104807785 Tarenaya hassleriana HOM05D005339 ORTHO05D006561 2.1e-111 406.4 339 73.2
GSVIVG01024083001 Vitis vinifera HOM05D005339 ORTHO05D006561 2.1e-111 406.4 339 74.3
Phvul.002G320300 Phaseolus vulgaris HOM05D005339 ORTHO05D006561 2.8e-111 406.0 342 76.6
Glyma.08G042200 Glycine max HOM05D005339 ORTHO05D006561 3.6e-111 405.6 341 73.9
Rhsim11G0187800 Rhododendron simsii HOM05D005339 ORTHO05D006561 3.6e-111 405.6 339 72.9
Cfa005184 Carpinus fangiana HOM05D005339 ORTHO05D006561 4.7e-111 405.2 340 72.6
QL11p047539 Quercus lobata HOM05D005339 ORTHO05D006561 6.2e-111 404.8 341 73.9
QL11p047573 Quercus lobata HOM05D005339 ORTHO05D006561 6.2e-111 404.8 341 73.9
ClCG02G011380 Citrullus lanatus HOM05D005339 ORTHO05D006561 8.1e-111 404.4 339 74.0
Potri.004G168400 Populus trichocarpa HOM05D005339 ORTHO05D006561 1.8e-110 403.3 339 73.2
PGSC0003DMG400001633 Solanum tuberosum HOM05D005339 ORTHO05D006561 3.1e-110 402.5 339 72.6
CSS0049457 Camellia sinensis var. sinensis HOM05D005339 ORTHO05D006561 5.2e-110 401.7 340 72.4
VMungo0251G0038 Vigna mungo HOM05D005339 ORTHO05D006561 5.2e-110 401.7 342 77.5
Cc11_g02780 Coffea canephora HOM05D005339 ORTHO05D006561 6.9e-110 401.4 341 73.6
Sed0019675 Sechium edule HOM05D005339 ORTHO05D006561 6.9e-110 401.4 339 73.2
Sabra04G0112800 Salix brachista HOM05D005339 ORTHO05D006561 9.0e-110 401.0 337 71.5
Solyc01g111140.3 Solanum lycopersicum HOM05D005339 ORTHO05D006561 9.0e-110 401.0 339 75.5
Sopen01g053200 Solanum pennellii HOM05D005339 ORTHO05D006561 9.0e-110 401.0 339 75.5
arahy.Tifrunner.gnm1.ann1.UV505Z Arachis hypogaea HOM05D005339 ORTHO05D006561 1.2e-109 400.6 355 71.5
ATR0810G182 Amborella trichopoda HOM05D005339 ORTHO05D006561 1.5e-109 400.2 339 72.9
CDE02G2588 Ceratophyllum demersum HOM05D005339 ORTHO05D006561 1.5e-109 400.2 339 66.7
Duzib132G0613 Durio zibethinus HOM05D005339 ORTHO05D006561 2.0e-109 399.8 349 71.3
Nitab4.5_0000283g0140 Nicotiana tabacum HOM05D005339 ORTHO05D006561 2.0e-109 399.8 339 75.2
Nitab4.5_0000980g0240 Nicotiana tabacum HOM05D005339 ORTHO05D006561 2.0e-109 399.8 339 75.2
Aqoxy5G01796 Aquilegia oxysepala HOM05D005339 ORTHO05D006561 2.6e-109 399.4 339 72.6
CiPaw.05G077200 Carya illinoinensis HOM05D005339 ORTHO05D006561 2.6e-109 399.4 342 71.9
Psat7g008680 Pisum sativum HOM05D005339 ORTHO05D006561 2.6e-109 399.4 343 72.3
vmacro02249 Vaccinium macrocarpon HOM05D005339 ORTHO05D006561 2.6e-109 399.4 339 74.9
CDE04G0258 Ceratophyllum demersum HOM05D005339 ORTHO05D006561 3.4e-109 399.1 339 72.0
Hma1.2p1_0032F.1_g019680 Hydrangea macrophylla HOM05D005339 ORTHO05D006561 5.8e-109 398.3 339 72.3
CAN.G588.26 Capsicum annuum HOM05D005339 ORTHO05D006561 7.6e-109 397.9 339 73.5
HanXRQChr15g0478851 Helianthus annuus HOM05D005339 ORTHO05D006561 7.6e-109 397.9 339 74.6
Peaxi162Scf00362g01036 Petunia axillaris HOM05D005339 ORTHO05D006561 7.6e-109 397.9 339 74.0
Medtr8g105120 Medicago truncatula HOM05D005339 ORTHO05D006561 1.3e-108 397.1 342 72.8
TWI31G0803 Tripterygium wilfordii HOM05D005339 ORTHO05D006561 1.3e-108 397.1 339 74.0
Migut.B00167 Erythranthe guttata HOM05D005339 ORTHO05D006561 1.7e-108 396.7 339 73.2
Hund06405 Selenicereus undatus HOM05D005339 ORTHO05D006561 2.9e-108 396.0 339 71.1
Atru.chr5.3227 Acer truncatum HOM05D005339 ORTHO05D006561 1.4e-107 393.7 339 72.9
SGA_v2.0_scaffold58G20457 Striga asiatica HOM05D005339 ORTHO05D006561 4.2e-107 392.1 359 70.5
DCAR_022955 Daucus carota HOM05D005339 ORTHO05D006561 9.3e-107 391.0 355 69.6
DCAR_022956 Daucus carota HOM05D005339 ORTHO05D006561 9.3e-107 391.0 355 69.6
Sp4g00300 Schrenkiella parvula HOM05D005339 ORTHO05D006561 2.1e-106 389.8 340 70.3
Zm00001eb103630 Zea mays HOM05D005339 ORTHO05D006561 6.0e-106 388.3 339 72.0
AUR62010093 Chenopodium quinoa HOM05D005339 ORTHO05D006561 7.8e-106 387.9 338 69.2
MBI19_g09243_MAGBIO Magnolia biondii HOM05D005339 ORTHO05D006561 7.8e-106 387.9 366 67.2
Carub.0004s0017 Capsella rubella HOM05D005339 ORTHO05D006561 1.7e-105 386.7 340 67.6
Os09g0535300 Oryza sativa ssp. japonica HOM05D005339 ORTHO05D006561 1.7e-105 386.7 339 72.0
Dinv41975 Davidia involucrata HOM05D005339 ORTHO05D006561 2.3e-105 386.3 339 76.7
AL4G10240 Arabidopsis lyrata HOM05D005339 ORTHO05D006561 3.0e-105 386.0 340 67.4
Thhalv10000232m.g Eutrema salsugineum HOM05D005339 ORTHO05D006561 3.0e-105 386.0 340 69.1
PSO700G0269 Papaver somniferum HOM05D005339 ORTHO05D006561 3.9e-105 385.6 345 68.7
AT2G21150 Arabidopsis thaliana HOM05D005339 ORTHO05D006561 8.7e-105 384.4 340 67.6
Oeu055639.3 Olea europaea HOM05D005339 ORTHO05D006561 1.9e-104 383.3 339 75.8
PSO170G1371 Papaver somniferum HOM05D005339 ORTHO05D006561 1.9e-104 383.3 345 68.4
LjContig00310g0009118 Lotus japonicus HOM05D005339 ORTHO05D006561 2.5e-104 382.9 340 74.4
Sabra09G0099200 Salix brachista HOM05D005339 ORTHO05D006561 2.5e-104 382.9 372 65.6
C04p50370 Brassica napus HOM05D005339 ORTHO05D006561 7.3e-104 381.3 339 68.4
BolC4t26635H Brassica oleracea HOM05D005339 ORTHO05D006561 7.3e-104 381.3 339 68.4
CiPaw.06G125300 Carya illinoinensis HOM05D005339 ORTHO05D006561 7.3e-104 381.3 339 69.6
unitig_744.g24266 Utricularia gibba HOM05D005339 ORTHO05D006561 9.6e-104 380.9 352 69.3
EL10Ac9g21438 Beta vulgaris HOM05D005339 ORTHO05D006561 1.3e-103 380.6 352 66.5
ECA246G3996 Erigeron canadensis HOM05D005339 ORTHO05D006561 1.6e-103 380.2 334 72.5
Aa31LG7G15530 Aethionema arabicum HOM05D005339 ORTHO05D006561 1.4e-102 377.1 331 70.1
SalBow6G1349 Salvia bowleyana HOM05D005339 ORTHO05D006561 1.8e-102 376.7 352 72.7
Mapoly0015s0022 Marchantia polymorpha HOM05D005339 ORTHO05D006561 2.4e-102 376.3 339 64.9
SMO117G0089 Selaginella moellendorffii HOM05D005339 ORTHO05D006561 3.1e-102 375.9 337 67.7
BcaB08g34965 Brassica carinata HOM05D005339 ORTHO05D006561 1.5e-101 373.6 340 67.9
AagrBONN_evm.TU.Sc2ySwM_344.4430 Anthoceros agrestis HOM05D005339 ORTHO05D006561 3.4e-101 372.5 338 67.5
C08p41800 Brassica napus HOM05D005339 ORTHO05D006561 3.4e-101 372.5 349 67.6
BolC8t51743H Brassica oleracea HOM05D005339 ORTHO05D006561 3.4e-101 372.5 349 68.5
Nn7g36850 Nelumbo nucifera HOM05D005339 ORTHO05D006561 7.6e-101 371.3 323 72.1
A09p58500 Brassica napus HOM05D005339 ORTHO05D006561 1.3e-100 370.5 347 67.7
Lalb_Chr23g0275171 Lupinus albus HOM05D005339 ORTHO05D006561 1.7e-100 370.2 323 72.4
BraA09t41237Z Brassica rapa HOM05D005339 ORTHO05D006561 6.4e-100 368.2 366 65.0
Pp3c17_13560 Physcomitrium patens HOM05D005339 ORTHO05D006561 8.4e-100 367.9 340 63.8
Ca_17265_v3 Cicer arietinum L. HOM05D005339 ORTHO05D006561 9.3e-99 364.4 327 72.5
Ca_17286_v3 Cicer arietinum L. HOM05D005339 ORTHO05D006561 9.3e-99 364.4 327 72.5
Lj4g0026543 Lotus japonicus HOM05D005339 ORTHO05D006561 9.3e-99 364.4 323 71.5
BcaC07g41172 Brassica carinata HOM05D005339 ORTHO05D006561 2.1e-98 363.2 333 70.0
Ah.01g009160 Amaranthus hybridus HOM05D005339 ORTHO05D006561 7.9e-98 361.3 339 69.9
Lj9C389T6 Lonicera japonica HOM05D005339 ORTHO05D006561 8.7e-97 357.8 379 62.8
COL.COLO4_17257 Corchorus olitorius HOM05D005339 ORTHO05D003646 1.6e-95 353.6 324 69.8
AUR62013089 Chenopodium quinoa HOM05D005339 ORTHO05D006561 1.4e-94 350.5 330 66.7
FAN26G3137 Fragaria x ananassa HOM05D005339 ORTHO05D006561 9.0e-94 347.8 338 71.3
A04p15920 Brassica napus HOM05D005339 ORTHO05D006561 3.2e-91 339.3 331 65.6
Haze_02197 Corylus avellana HOM05D005339 ORTHO05D006561 7.9e-90 334.7 340 59.1
TAR376G0223 Trochodendron aralioides HOM05D005339 ORTHO05D006561 7.4e-88 328.2 307 70.0
HPP92_028582 Vanilla planifolia HOM05D005339 ORTHO05D006561 1.1e-80 304.3 337 61.4
Manes.11G090000 Manihot esculenta HOM05D005339 ORTHO05D006561 3.3e-80 302.8 275 72.4
Lsat_1_v5_gn_3_45301 Lactuca sativa HOM05D005339 ORTHO05D006561 5.7e-80 302.0 336 63.7
TPR.G17076 Trifolium pratense HOM05D005339 ORTHO05D006561 5.7e-80 302.0 286 68.2
BraA04t17225Z Brassica rapa HOM05D005339 ORTHO05D006561 6.3e-79 298.5 517 44.9
Cpa.g.sc37.191 Carica papaya HOM05D005339 ORTHO05D006561 6.7e-73 278.5 323 61.9
Sc08g0003210 Simmondsia chinensis HOM05D005339 ORTHO05D006561 6.9e-70 268.5 221 65.6
Pp3c2_11550 Physcomitrium patens HOM05D005339 ORTHO05D006561 1.1e-67 261.2 280 59.3
MELO3C020783.2 Cucumis melo HOM05D005339 ORTHO05D006561 1.6e-66 257.3 257 69.6
Cre07.g341300 Chlamydomonas reinhardtii HOM05D005339 ORTHO05D006561 3.0e-65 253.1 383 41.5
VMungo0251G1189 Vigna mungo HOM05D005339 ORTHO05D006561 6.5e-60 235.3 127 89.8
MCO15G465 Micromonas commoda HOM05D005339 ORTHO05D006561 2.0e-56 223.8 330 43.9
CBR_g47091 Chara braunii HOM05D005339 ORTHO05D006561 1.0e-44 184.9 116 76.7
QL11p047601 Quercus lobata HOM05D005339 ORTHO05D006561 2.7e-42 176.8 172 59.9
CARHR112000 Cardamine hirsuta HOM05D005339 ORTHO05D006561 1.7e-39 167.5 165 61.8
SEGI_00782 Sequoiadendron giganteum HOM05D005339 ORTHO05D006561 8.3e-39 165.2 176 69.9
PRCOL_00006995 Prasinoderma coloniale HOM05D005339 ORTHO05D006561 2.4e-38 163.7 327 39.8
VMungo0251G1261 Vigna mungo HOM05D005339 ORTHO05D006561 5.9e-37 159.1 90 94.4
Actinidia00595 Actinidia chinensis HOM05D005339 ORTHO05D006561 1.5e-35 154.5 91 89.0
CSS0019608 Camellia sinensis var. sinensis HOM05D005339 ORTHO05D006561 3.3e-35 153.3 82 89.0
TPR.G35331 Trifolium pratense HOM05D005339 ORTHO05D006561 1.1e-22 111.7 57 91.2
Phvul.002G320400 Phaseolus vulgaris HOM05D005339 ORTHO05D006561 1.4e-22 111.3 64 92.2
CSS0027179 Camellia sinensis var. sinensis HOM05D005339 ORTHO05D006561 4.9e-15 86.3 45 91.1
MCO03G074 Micromonas commoda HOM05D005339 ORTHO05D006561 1.0e-12 78.6 209 27.8
Cfa025584 Carpinus fangiana HOM05D005339 ORTHO05D006561 7.3e-11 72.4 156 33.3
Migut.O00339 Erythranthe guttata HOM05D005339 ORTHO05D006561 8.1e-10 68.9 30 93.3
SMO274G0062 Selaginella moellendorffii HOM05D005339 ORTHO05D006561 2.3e-09 67.4 56 60.7
CSS0035622 Camellia sinensis var. sinensis HOM05D005339 ORTHO05D006561 7.5e-08 62.4 72 76.4
SMO301G0014 Selaginella moellendorffii HOM05D005339 ORTHO05D006561 3.2e-06 57.0 46 63.0
TPR.G17724 Trifolium pratense HOM05D005339 ORTHO05D006561 3.2e-06 57.0 33 87.9


User provided reference genes

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