Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN19G1322 Fragaria x ananassa HOM05D004528 ORTHO05D005815 1.6e-233 812.4 414 100.0
FvH4_1g07290 Fragaria vesca HOM05D004528 ORTHO05D005815 2.1e-233 812.0 414 99.8
FAN23G0078 Fragaria x ananassa HOM05D004528 ORTHO05D005815 9.8e-231 803.1 414 98.8
FAN28G2769 Fragaria x ananassa HOM05D004528 ORTHO05D005815 1.9e-229 798.9 414 98.3
RcHm_v2.0_Chr2g0093221 Rosa chinensis HOM05D004528 ORTHO05D005815 1.1e-224 783.1 414 95.7
Prupe.7G211100 Prunus persica HOM05D004528 ORTHO05D005815 1.7e-211 739.2 414 89.4
MD15G1206300 Malus domestica HOM05D004528 ORTHO05D005815 5.3e-208 727.6 414 87.9
MD02G1077700 Malus domestica HOM05D004528 ORTHO05D005815 5.8e-207 724.2 414 87.4
Manes.16G102700 Manihot esculenta HOM05D004528 ORTHO05D005815 2.1e-204 715.7 414 86.5
Thecc.09G090300 Theobroma cacao HOM05D004528 ORTHO05D005815 1.5e-202 709.5 414 86.0
QL02p062827 Quercus lobata HOM05D004528 ORTHO05D005815 1.4e-200 703.0 410 84.9
GSVIVG01015212001 Vitis vinifera HOM05D004528 ORTHO05D005815 4.0e-200 701.4 414 84.1
CANSAT56G0596 Cannabis sativa HOM05D004528 ORTHO05D005815 2.0e-199 699.1 414 84.1
CANSAT56G1313 Cannabis sativa HOM05D004528 ORTHO05D005815 2.0e-199 699.1 414 84.1
Ciclev10008462m.g Citrus clementina HOM05D004528 ORTHO05D005815 2.6e-199 698.7 414 84.5
COL.COLO4_18209 Corchorus olitorius HOM05D004528 ORTHO05D005815 2.6e-199 698.7 414 84.3
Potri.006G221700 Populus trichocarpa HOM05D004528 ORTHO05D005815 3.4e-199 698.4 414 84.5
CiPaw.03G217000 Carya illinoinensis HOM05D004528 ORTHO05D005815 5.8e-199 697.6 416 84.1
Gorai.010G082500 Gossypium raimondii HOM05D004528 ORTHO05D005815 1.3e-198 696.4 414 84.1
Duzib150G1454 Durio zibethinus HOM05D004528 ORTHO05D005815 2.2e-198 695.7 409 84.8
TWI34G0432 Tripterygium wilfordii HOM05D004528 ORTHO05D005815 6.4e-198 694.1 414 83.1
CSS0033534 Camellia sinensis var. sinensis HOM05D004528 ORTHO05D005815 1.1e-197 693.3 414 84.3
Dinv36760 Davidia involucrata HOM05D004528 ORTHO05D005815 1.6e-196 689.5 414 84.1
MBI01_g09956_MAGBIO Magnolia biondii HOM05D004528 ORTHO05D005815 6.7e-195 684.1 412 81.8
BolC7t40641H Brassica oleracea HOM05D004528 ORTHO05D005815 8.7e-195 683.7 414 82.1
CARHR109990 Cardamine hirsuta HOM05D004528 ORTHO05D005815 8.7e-195 683.7 414 82.4
Sed0012435 Sechium edule HOM05D004528 ORTHO05D005815 8.7e-195 683.7 414 81.6
C07p02330 Brassica napus HOM05D004528 ORTHO05D005815 1.9e-194 682.6 414 82.1
BcaC06g36598 Brassica carinata HOM05D004528 ORTHO05D005815 3.3e-194 681.8 414 81.6
BraA07t27910Z Brassica rapa HOM05D004528 ORTHO05D005815 3.3e-194 681.8 414 81.6
Eucgr.C00900 Eucalyptus grandis HOM05D004528 ORTHO05D005815 9.6e-194 680.2 413 82.3
Hma1.2p1_0800F.1_g220090 Hydrangea macrophylla HOM05D004528 ORTHO05D005815 9.6e-194 680.2 412 82.3
A07p01220 Brassica napus HOM05D004528 ORTHO05D005815 1.6e-193 679.5 414 81.4
Carub.0003s3385 Capsella rubella HOM05D004528 ORTHO05D005815 2.8e-193 678.7 414 81.9
BcaB08g34873 Brassica carinata HOM05D004528 ORTHO05D005815 3.7e-193 678.3 414 81.6
PGR142G0229 Punica granatum HOM05D004528 ORTHO05D005815 6.2e-193 677.6 413 83.3
ClCG11G001780 Citrullus lanatus HOM05D004528 ORTHO05D005815 8.1e-193 677.2 414 81.2
Haze_25904 Corylus avellana HOM05D004528 ORTHO05D005815 8.1e-193 677.2 411 81.8
vmacro17227 Vaccinium macrocarpon HOM05D004528 ORTHO05D005815 1.1e-192 676.8 445 78.2
VMungo1215G0680 Vigna mungo HOM05D004528 ORTHO05D005815 1.1e-192 676.8 414 81.6
Glyma.17G055500 Glycine max HOM05D004528 ORTHO05D005815 1.8e-192 676.0 414 81.6
Phvul.003G137300 Phaseolus vulgaris HOM05D004528 ORTHO05D005815 2.4e-192 675.6 414 81.9
CsaV3_2G001490 Cucumis sativus L. HOM05D004528 ORTHO05D005815 5.3e-192 674.5 409 80.9
Lalb_Chr13g0299741 Lupinus albus HOM05D004528 ORTHO05D005815 9.0e-192 673.7 414 81.2
ECA240G0155 Erigeron canadensis HOM05D004528 ORTHO05D005815 1.5e-191 672.9 413 80.4
AL3G48690 Arabidopsis lyrata HOM05D004528 ORTHO05D005815 2.0e-191 672.5 414 80.9
Glyma.13G103500 Glycine max HOM05D004528 ORTHO05D005815 2.6e-191 672.2 411 81.8
Cc06_g11330 Coffea canephora HOM05D004528 ORTHO05D005815 1.3e-190 669.8 411 81.3
Thhalv10022707m.g Eutrema salsugineum HOM05D004528 ORTHO05D005815 2.2e-190 669.1 414 80.7
THA.LOC104820025 Tarenaya hassleriana HOM05D004528 ORTHO05D005815 3.8e-190 668.3 414 80.4
TAR626G1836 Trochodendron aralioides HOM05D004528 ORTHO05D005815 4.9e-190 667.9 414 79.7
BcaC05g26001 Brassica carinata HOM05D004528 ORTHO05D005815 6.5e-190 667.5 426 79.1
Migut.J00603 Erythranthe guttata HOM05D004528 ORTHO05D005815 6.5e-190 667.5 413 80.6
arahy.Tifrunner.gnm1.ann1.A138U3 Arachis hypogaea HOM05D004528 ORTHO05D005815 1.1e-189 666.8 414 79.7
C05p19590 Brassica napus HOM05D004528 ORTHO05D005815 1.1e-189 666.8 426 79.1
BolC5t30662H Brassica oleracea HOM05D004528 ORTHO05D005815 1.1e-189 666.8 426 79.1
Lj7A674G30 Lonicera japonica HOM05D004528 ORTHO05D005815 1.9e-189 666.0 409 82.4
SalBow6G2464 Salvia bowleyana HOM05D004528 ORTHO05D005815 5.5e-189 664.5 413 78.9
MSTRG.17774 Avicennia marina HOM05D004528 ORTHO05D005815 7.1e-189 664.1 413 80.4
DCAR_011978 Daucus carota HOM05D004528 ORTHO05D005815 7.1e-189 664.1 417 81.3
arahy.Tifrunner.gnm1.ann1.PT0GJ5 Arachis hypogaea HOM05D004528 ORTHO05D005815 9.3e-189 663.7 414 79.5
Lj4g0008156 Lotus japonicus HOM05D004528 ORTHO05D005815 1.2e-188 663.3 416 80.8
Psat3g072560 Pisum sativum HOM05D004528 ORTHO05D005815 2.1e-188 662.5 414 79.7
AT2G19560 Arabidopsis thaliana HOM05D004528 ORTHO05D005815 6.0e-188 661.0 414 79.2
TPR.G3725 Trifolium pratense HOM05D004528 ORTHO05D005815 1.0e-187 660.2 414 79.2
SGA_v2.0_scaffold62G21604 Striga asiatica HOM05D004528 ORTHO05D005815 2.3e-187 659.1 413 80.1
Aa31LG8G16570 Aethionema arabicum HOM05D004528 ORTHO05D005815 3.0e-187 658.7 414 79.7
Oeu018425.1 Olea europaea HOM05D004528 ORTHO05D005815 3.0e-187 658.7 413 80.4
Lsat_1_v5_gn_7_37341 Lactuca sativa HOM05D004528 ORTHO05D005815 3.9e-187 658.3 413 79.2
Sp3g32930 Schrenkiella parvula HOM05D004528 ORTHO05D005815 2.4e-184 649.0 414 79.2
Aqoxy7G01232 Aquilegia oxysepala HOM05D004528 ORTHO05D005815 4.1e-184 648.3 414 77.3
Actinidia25256 Actinidia chinensis HOM05D004528 ORTHO05D005815 9.0e-184 647.1 410 80.0
AUR62033986 Chenopodium quinoa HOM05D004528 ORTHO05D005815 1.5e-183 646.4 411 78.6
PGSC0003DMG400013151 Solanum tuberosum HOM05D004528 ORTHO05D005815 1.0e-182 643.7 413 78.0
Solyc07g039210.4 Solanum lycopersicum HOM05D004528 ORTHO05D005815 1.7e-182 642.9 413 77.0
CAN.G1208.1 Capsicum annuum HOM05D004528 ORTHO05D005815 2.9e-182 642.1 411 77.4
Nitab4.5_0011030g0010 Nicotiana tabacum HOM05D004528 ORTHO05D005815 3.8e-182 641.7 414 77.3
Sopen07g017560 Solanum pennellii HOM05D004528 ORTHO05D005815 8.4e-182 640.6 413 76.8
Medtr7g091650 Medicago truncatula HOM05D004528 ORTHO05D005815 1.9e-181 639.4 415 78.6
EL10Ac8g19227 Beta vulgaris HOM05D004528 ORTHO05D005815 3.2e-181 638.6 438 74.4
SEGI_06455 Sequoiadendron giganteum HOM05D004528 ORTHO05D005815 1.3e-179 633.3 413 74.1
Nitab4.5_0005634g0070 Nicotiana tabacum HOM05D004528 ORTHO05D005815 2.3e-179 632.5 420 76.0
Peaxi162Scf00709g00003 Petunia axillaris HOM05D004528 ORTHO05D005815 2.3e-179 632.5 420 76.0
BcaB04g16932 Brassica carinata HOM05D004528 ORTHO05D005815 6.3e-177 624.4 416 76.2
Nn6g35452 Nelumbo nucifera HOM05D004528 ORTHO05D005815 4.1e-176 621.7 414 77.1
unitig_748.g7306 Utricularia gibba HOM05D004528 ORTHO05D005815 5.3e-176 621.3 429 73.9
Gohir.D06G070800 Gossypium hirsutum HOM05D004528 ORTHO05D005815 5.9e-175 617.8 371 83.0
Gohir.A06G072200 Gossypium hirsutum HOM05D004528 ORTHO05D005815 7.7e-175 617.5 375 82.1
PSO063G0639 Papaver somniferum HOM05D004528 ORTHO05D005815 2.9e-174 615.5 415 74.7
PSO832G3660 Papaver somniferum HOM05D004528 ORTHO05D005815 1.9e-173 612.8 415 74.0
HPP92_010493 Vanilla planifolia HOM05D004528 ORTHO05D005815 3.6e-172 608.6 415 73.5
Ca_08460_v3 Cicer arietinum L. HOM05D004528 ORTHO05D005815 1.1e-168 597.0 406 75.1
SHI24590 Sapria himalayana HOM05D004528 ORTHO05D005815 4.5e-167 591.7 410 73.9
MELO3C004622.2 Cucumis melo HOM05D004528 ORTHO05D005815 1.9e-165 586.3 414 72.2
Sc18g0002070 Simmondsia chinensis HOM05D004528 ORTHO05D005815 4.4e-162 575.1 371 79.5
Mapoly0005s0151 Marchantia polymorpha HOM05D004528 ORTHO05D005815 4.8e-161 571.6 410 68.0
Os09g0386400 Oryza sativa ssp. japonica HOM05D004528 ORTHO05D005815 4.1e-160 568.5 410 69.8
BcaB04g16933 Brassica carinata HOM05D004528 ORTHO05D005815 7.0e-160 567.8 418 70.1
Cpa.g.sc283.9 Carica papaya HOM05D004528 ORTHO05D005815 1.6e-159 566.6 412 71.4
Rhsim05G0022000 Rhododendron simsii HOM05D004528 ORTHO05D005815 9.4e-157 557.4 325 86.5
Sabra06G0171200 Salix brachista HOM05D004528 ORTHO05D005815 2.0e-154 549.7 485 63.5
FAN26G1375 Fragaria x ananassa HOM05D004528 ORTHO05D005815 2.0e-151 539.7 294 94.2
FAN26G2732 Fragaria x ananassa HOM05D004528 ORTHO05D005815 2.0e-151 539.7 294 94.2
Pp3c17_12810 Physcomitrium patens HOM05D004528 ORTHO05D005815 1.9e-149 533.1 398 66.1
AUR62027494 Chenopodium quinoa HOM05D004528 ORTHO05D005815 5.5e-149 531.6 411 67.9
SMO117G0048 Selaginella moellendorffii HOM05D004528 ORTHO05D005815 2.8e-145 519.2 405 61.2
AagrBONN_evm.TU.Sc2ySwM_344.906 Anthoceros agrestis HOM05D004528 ORTHO05D005815 1.2e-140 503.8 412 60.7
A07p01200 Brassica napus HOM05D004528 ORTHO05D005815 1.0e-139 500.7 305 80.7
Atru.chr7.1579 Acer truncatum HOM05D004528 ORTHO05D005815 7.7e-135 484.6 296 79.7
Hma1.2p1_0800F.1_g220100 Hydrangea macrophylla HOM05D004528 ORTHO05D005815 1.1e-125 454.1 257 87.9
BcaB03g16691 Brassica carinata HOM05D004528 ORTHO05D005815 1.1e-115 421.0 313 69.0
CDE02G2136 Ceratophyllum demersum HOM05D004528 ORTHO05D005815 4.0e-115 419.1 314 69.1
Zm00001eb311810 Zea mays HOM05D004528 ORTHO05D005815 2.6e-114 416.4 256 79.3
HPP92_010492 Vanilla planifolia HOM05D004528 ORTHO05D005815 4.1e-112 409.1 285 71.2
BcaB03g16690 Brassica carinata HOM05D004528 ORTHO05D005815 5.4e-104 382.1 284 69.0
BcaB03g16744 Brassica carinata HOM05D004528 ORTHO05D005815 2.3e-102 376.7 301 68.8
CBR_g78884 Chara braunii HOM05D004528 ORTHO05D005815 2.1e-100 370.2 409 48.7
Ca_30052_v3 Cicer arietinum L. HOM05D004528 ORTHO05D005815 7.1e-88 328.6 191 86.9
CARHR052830 Cardamine hirsuta HOM05D004528 ORTHO05D005815 1.9e-80 303.9 238 66.4
Oeu018237.1 Olea europaea HOM05D004528 ORTHO05D005815 1.8e-78 297.4 205 72.7
HanXRQChr09g0238111 Helianthus annuus HOM05D004528 ORTHO05D005815 9.0e-75 285.0 184 74.5
CARHR051760 Cardamine hirsuta HOM05D004528 ORTHO05D005815 2.5e-72 276.9 199 70.4
PGSC0003DMG400022053 Solanum tuberosum HOM05D004528 ORTHO05D005815 1.6e-71 274.2 173 79.2
CARHR054270 Cardamine hirsuta HOM05D004528 ORTHO05D005815 1.7e-65 254.2 204 66.7
MD15G1352000 Malus domestica HOM05D004528 ORTHO05D005815 2.1e-63 247.3 220 60.5
MCO16G315 Micromonas commoda HOM05D004528 ORTHO05D005815 2.7e-63 246.9 404 35.9
ATR0026G021 Amborella trichopoda HOM05D004528 ORTHO05D005815 7.7e-58 228.8 139 83.5
PRCOL_00001383 Prasinoderma coloniale HOM05D004528 ORTHO05D005815 3.8e-57 226.5 321 37.1
Cre02.g110400 Chlamydomonas reinhardtii HOM05D004528 ORTHO05D005815 3.2e-56 223.4 400 33.2
CARHR122310 Cardamine hirsuta HOM05D004528 ORTHO05D005815 1.7e-52 211.1 126 81.7
CARHR052790 Cardamine hirsuta HOM05D004528 ORTHO05D005815 2.1e-47 194.1 199 56.8
arahy.Tifrunner.gnm1.ann1.43843R Arachis hypogaea HOM05D004528 ORTHO05D005815 2.6e-45 187.2 121 70.2
CARHR051750 Cardamine hirsuta HOM05D004528 ORTHO05D005815 2.2e-44 184.1 161 62.7
CARHR122320 Cardamine hirsuta HOM05D004528 ORTHO05D005815 8.2e-44 182.2 177 57.1
arahy.Tifrunner.gnm1.ann1.VVLB7Q Arachis hypogaea HOM05D004528 ORTHO05D005815 1.6e-39 167.9 102 75.5
Ah.14g085220 Amaranthus hybridus HOM05D004528 ORTHO05D005815 8.8e-38 162.2 414 31.6
Sp2g03965 Schrenkiella parvula HOM05D004528 ORTHO05D005815 7.5e-37 159.1 114 67.5
arahy.Tifrunner.gnm1.ann1.DFU5EN Arachis hypogaea HOM05D004528 ORTHO05D005815 1.0e-33 148.7 83 81.9
ATR0026G010 Amborella trichopoda HOM05D004528 ORTHO05D005815 2.2e-33 147.5 80 85.0
ATR0026G011 Amborella trichopoda HOM05D004528 ORTHO05D005815 1.2e-31 141.7 106 64.2
RcHm_v2.0_Chr7g0206721 Rosa chinensis HOM05D004528 ORTHO05D005815 7.5e-29 132.5 117 66.7
RcHm_v2.0_Chr7g0207111 Rosa chinensis HOM05D004528 ORTHO05D005815 9.8e-21 105.5 101 63.4
FAN23G1719 Fragaria x ananassa HOM05D004528 ORTHO05D005815 8.3e-20 102.4 51 100.0
BcaC03g15601 Brassica carinata HOM05D004528 ORTHO05D032255 1.2e-18 98.6 114 56.1
BolC2t09319H Brassica oleracea HOM05D004528 ORTHO05D032255 1.2e-18 98.6 143 47.6
C02p33900 Brassica napus HOM05D004528 ORTHO05D032255 1.1e-16 92.0 146 45.9
Sopen12g027230 Solanum pennellii HOM05D004528 ORTHO05D051045 1.6e-15 88.2 154 37.7
RcHm_v2.0_Chr7g0207281 Rosa chinensis HOM05D004528 ORTHO05D005815 1.0e-14 85.5 54 88.9
CARHR054280 Cardamine hirsuta HOM05D004528 ORTHO05D005815 7.5e-13 79.3 71 59.2
CARHR054260 Cardamine hirsuta HOM05D004528 ORTHO05D005815 1.8e-11 74.7 50 74.0
arahy.Tifrunner.gnm1.ann1.1S90RN Arachis hypogaea HOM05D004528 ORTHO05D005815 1.6e-10 71.6 57 63.2
arahy.Tifrunner.gnm1.ann1.UXE40S Arachis hypogaea HOM05D004528 ORTHO05D005815 7.8e-10 69.3 83 48.2
RcHm_v2.0_Chr7g0230831 Rosa chinensis HOM05D004528 ORTHO05D005815 1.7e-09 68.2 40 87.5


User provided reference genes

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