Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN19G0240 Fragaria x ananassa HOM05D005064 ORTHO05D006611 0.0e+00 2195.2 1254 100.0
FvH4_1g25820 Fragaria vesca HOM05D005064 ORTHO05D006611 0.0e+00 2100.1 1254 96.0
FAN23G3111 Fragaria x ananassa HOM05D005064 ORTHO05D006611 0.0e+00 2023.4 1261 88.9
FAN28G2142 Fragaria x ananassa HOM05D005064 ORTHO05D006611 0.0e+00 1849.3 1260 83.5
RcHm_v2.0_Chr3g0484931 Rosa chinensis HOM05D005064 ORTHO05D006611 0.0e+00 1755.3 1268 80.0
Prupe.4G287200 Prunus persica HOM05D005064 ORTHO05D006611 0.0e+00 1285.0 1284 56.8
MD01G1008700 Malus domestica HOM05D005064 ORTHO05D006611 0.0e+00 1203.7 1291 54.8
QL07p034075 Quercus lobata HOM05D005064 ORTHO05D006611 0.0e+00 1076.2 1303 49.1
Haze_21075 Corylus avellana HOM05D005064 ORTHO05D006611 3.3e-306 1055.4 1329 47.9
GSVIVG01030280001 Vitis vinifera HOM05D005064 ORTHO05D006611 2.8e-305 1052.4 1323 47.5
Atru.chr8.2328 Acer truncatum HOM05D005064 ORTHO05D006611 2.2e-302 1042.7 1308 47.7
Duzib093G0745 Durio zibethinus HOM05D005064 ORTHO05D006611 2.4e-296 1022.7 1304 45.6
Manes.09G111200 Manihot esculenta HOM05D005064 ORTHO05D006611 5.5e-293 1011.5 1299 46.7
Dinv35394 Davidia involucrata HOM05D005064 ORTHO05D006611 2.0e-290 1003.0 1298 47.5
CANSAT35G0044 Cannabis sativa HOM05D005064 ORTHO05D006611 4.8e-289 998.4 1307 46.0
Thecc.05G007600 Theobroma cacao HOM05D005064 ORTHO05D006611 8.2e-289 997.7 1309 46.1
Ciclev10013403m.g Citrus clementina HOM05D005064 ORTHO05D006611 7.2e-285 984.6 1298 46.2
Lj2C68T2 Lonicera japonica HOM05D005064 ORTHO05D006611 2.6e-282 976.1 1305 45.0
Potri.014G189600 Populus trichocarpa HOM05D005064 ORTHO05D006611 1.2e-279 967.2 1293 45.6
Gorai.012G119100 Gossypium raimondii HOM05D005064 ORTHO05D006611 2.7e-279 966.1 1333 44.3
Cpa.g.sc5.230 Carica papaya HOM05D005064 ORTHO05D006611 5.0e-278 961.8 1276 46.4
ClCG10G022430 Citrullus lanatus HOM05D005064 ORTHO05D006611 6.8e-275 951.4 906 56.2
CsaV3_3G033440 Cucumis sativus L. HOM05D005064 ORTHO05D006611 4.4e-274 948.7 1296 45.1
Sabra14G0144800 Salix brachista HOM05D005064 ORTHO05D006611 1.4e-272 943.7 1320 44.2
CSS0042379 Camellia sinensis var. sinensis HOM05D005064 ORTHO05D006611 5.6e-269 931.8 1290 44.7
TWI74G0298 Tripterygium wilfordii HOM05D005064 ORTHO05D006611 9.5e-269 931.0 1307 43.9
MELO3C009135.2 Cucumis melo HOM05D005064 ORTHO05D006611 4.4e-266 922.2 1322 44.1
COL.COLO4_14461 Corchorus olitorius HOM05D005064 ORTHO05D006611 1.3e-265 920.6 889 55.1
Gohir.A04G095400 Gossypium hirsutum HOM05D005064 ORTHO05D006611 5.4e-264 915.2 908 54.0
Sed0013669 Sechium edule HOM05D005064 ORTHO05D006611 7.8e-263 911.4 1297 43.3
Gohir.D04G135300 Gossypium hirsutum HOM05D005064 ORTHO05D006611 1.0e-262 911.0 908 53.6
Psat5g101280 Pisum sativum HOM05D005064 ORTHO05D006611 2.9e-257 892.9 916 52.3
TAR633G1737 Trochodendron aralioides HOM05D005064 ORTHO05D006611 1.9e-256 890.2 1313 42.5
Medtr3g083250 Medicago truncatula HOM05D005064 ORTHO05D006611 1.6e-255 887.1 917 51.8
Nn2g11003 Nelumbo nucifera HOM05D005064 ORTHO05D006611 7.8e-255 884.8 1316 42.1
TPR.G19329 Trifolium pratense HOM05D005064 ORTHO05D006611 7.8e-255 884.8 944 51.5
Eucgr.K02953 Eucalyptus grandis HOM05D005064 ORTHO05D006611 5.6e-253 878.6 910 52.0
Lalb_Chr22g0360891 Lupinus albus HOM05D005064 ORTHO05D006611 7.3e-253 878.2 1308 43.2
CiPaw.09G214500 Carya illinoinensis HOM05D005064 ORTHO05D006611 1.6e-252 877.1 678 65.0
Lj6g0012785 Lotus japonicus HOM05D005064 ORTHO05D006611 3.6e-252 875.9 1271 43.1
Ca_16367_v3 Cicer arietinum L. HOM05D005064 ORTHO05D006611 1.2e-250 870.9 918 51.4
Rhsim05G0225400 Rhododendron simsii HOM05D005064 ORTHO05D006611 2.0e-250 870.2 909 52.4
vmacro04273 Vaccinium macrocarpon HOM05D005064 ORTHO05D006611 1.3e-249 867.5 1296 43.4
VMungo0540G1710 Vigna mungo HOM05D005064 ORTHO05D006611 6.4e-249 865.1 910 52.0
AT5G01630 Arabidopsis thaliana HOM05D005064 ORTHO05D006611 1.6e-247 860.5 1338 40.5
Carub.0006s0020 Capsella rubella HOM05D005064 ORTHO05D006611 1.2e-244 850.9 1337 41.1
THA.LOC104798645 Tarenaya hassleriana HOM05D005064 ORTHO05D006611 2.1e-244 850.1 1340 40.8
THA.LOC104816179 Tarenaya hassleriana HOM05D005064 ORTHO05D006611 2.8e-244 849.7 1364 40.2
EL10Ac5g12491 Beta vulgaris HOM05D005064 ORTHO05D006611 5.2e-243 845.5 1278 41.6
AL6G10420 Arabidopsis lyrata HOM05D005064 ORTHO05D006611 1.5e-242 844.0 1334 40.7
Cc06_g00810 Coffea canephora HOM05D005064 ORTHO05D006611 5.8e-242 842.0 1287 41.1
Sopen02g008440 Solanum pennellii HOM05D005064 ORTHO05D006611 2.2e-241 840.1 1303 41.5
MSTRG.18977 Avicennia marina HOM05D005064 ORTHO05D006611 9.2e-240 834.7 1322 41.3
CARHR211980 Cardamine hirsuta HOM05D005064 ORTHO05D006611 9.2e-240 834.7 1335 40.2
HanXRQChr15g0486851 Helianthus annuus HOM05D005064 ORTHO05D006611 3.9e-238 829.3 1279 41.8
Glyma.13G010700 Glycine max HOM05D005064 ORTHO05D006611 5.6e-237 825.5 917 50.5
AUR62030766 Chenopodium quinoa HOM05D005064 ORTHO05D006611 8.1e-236 821.6 1299 40.3
Thhalv10027627m.g Eutrema salsugineum HOM05D005064 ORTHO05D006611 1.1e-235 821.2 1252 40.3
arahy.Tifrunner.gnm1.ann1.XPQW08 Arachis hypogaea HOM05D005064 ORTHO05D006611 1.4e-235 820.8 1265 42.1
arahy.Tifrunner.gnm1.ann1.168PWC Arachis hypogaea HOM05D005064 ORTHO05D006611 4.0e-235 819.3 1236 42.7
Migut.J00101 Erythranthe guttata HOM05D005064 ORTHO05D006611 5.2e-235 818.9 1331 41.4
Aqoxy2G00779 Aquilegia oxysepala HOM05D005064 ORTHO05D006611 2.0e-234 817.0 916 48.8
ECA234G3016 Erigeron canadensis HOM05D005064 ORTHO05D006611 5.8e-234 815.5 911 49.2
FAN26G2490 Fragaria x ananassa HOM05D005064 ORTHO05D006611 6.4e-233 812.0 464 88.8
Hund25531 Selenicereus undatus HOM05D005064 ORTHO05D006611 8.4e-233 811.6 1309 40.2
Sp7g05130 Schrenkiella parvula HOM05D005064 ORTHO05D006611 1.9e-232 810.4 1286 39.0
AUR62030526 Chenopodium quinoa HOM05D005064 ORTHO05D006611 2.4e-232 810.1 1300 40.5
PSO339G1571 Papaver somniferum HOM05D005064 ORTHO05D006611 1.2e-231 807.7 1340 40.0
Aa31LG1G23250 Aethionema arabicum HOM05D005064 ORTHO05D006611 8.7e-230 801.6 1354 38.6
Thhalv10012491m.g Eutrema salsugineum HOM05D005064 ORTHO05D006611 3.3e-229 799.7 1299 39.3
BcaB01g06242 Brassica carinata HOM05D005064 ORTHO05D006611 1.1e-227 794.7 1328 39.3
CAN.G989.4 Capsicum annuum HOM05D005064 ORTHO05D006611 2.0e-226 790.4 893 48.9
A03p00180 Brassica napus HOM05D005064 ORTHO05D006611 1.1e-224 784.6 1283 39.9
Nitab4.5_0010437g0010 Nicotiana tabacum HOM05D005064 ORTHO05D006611 3.2e-224 783.1 1321 40.0
BolC3t12595H Brassica oleracea HOM05D005064 ORTHO05D006611 4.2e-224 782.7 926 47.2
BraA03t09408Z Brassica rapa HOM05D005064 ORTHO05D006611 1.6e-223 780.8 1389 37.7
Peaxi162Scf00744g00354 Petunia axillaris HOM05D005064 ORTHO05D006611 7.9e-223 778.5 1325 38.9
Aa31sc411G40 Aethionema arabicum HOM05D005064 ORTHO05D006611 8.7e-222 775.0 1241 39.4
AT4G00020 Arabidopsis thaliana HOM05D005064 ORTHO05D006611 3.7e-220 769.6 1275 39.3
C06p17140 Brassica napus HOM05D005064 ORTHO05D006611 3.1e-219 766.5 1285 39.4
PSO801G0135 Papaver somniferum HOM05D005064 ORTHO05D006611 9.0e-219 765.0 1341 39.1
C03p00330 Brassica napus HOM05D005064 ORTHO05D006611 2.0e-218 763.8 911 46.9
Lsat_1_v5_gn_5_149520 Lactuca sativa HOM05D005064 ORTHO05D006611 5.8e-218 762.3 919 47.7
BcaB01g06109 Brassica carinata HOM05D005064 ORTHO05D006611 7.6e-218 761.9 911 46.9
SGA_v2.0_scaffold85G26687 Striga asiatica HOM05D005064 ORTHO05D006611 1.7e-217 760.8 1306 39.3
A05p16640 Brassica napus HOM05D005064 ORTHO05D006611 2.4e-216 756.9 1286 39.3
Sp6g40890 Schrenkiella parvula HOM05D005064 ORTHO05D006611 3.5e-215 753.1 721 53.0
BcaC08g44292 Brassica carinata HOM05D005064 ORTHO05D006611 6.0e-215 752.3 1297 38.6
BolC6t36909H Brassica oleracea HOM05D005064 ORTHO05D006611 1.1e-213 748.0 1314 38.4
BraA05t20569Z Brassica rapa HOM05D005064 ORTHO05D006611 2.5e-213 746.9 1275 39.3
MBI03_g13049_MAGBIO Magnolia biondii HOM05D005064 ORTHO05D006611 5.8e-210 735.7 664 56.6
Os01g0164800 Oryza sativa ssp. japonica HOM05D005064 ORTHO05D006611 3.9e-198 696.4 927 44.7
HPP92_013842 Vanilla planifolia HOM05D005064 ORTHO05D006611 5.1e-198 696.0 839 46.2
Ah.12g059020 Amaranthus hybridus HOM05D005064 ORTHO05D006611 1.1e-197 694.9 1220 38.6
ATR0594G137 Amborella trichopoda HOM05D005064 ORTHO05D006611 1.1e-197 694.9 957 44.0
SHI12869 Sapria himalayana HOM05D005064 ORTHO05D006611 1.3e-193 681.4 908 45.7
Zm00001eb419130 Zea mays HOM05D005064 ORTHO05D006611 2.5e-192 677.2 915 44.5
SalBow5G0042 Salvia bowleyana HOM05D005064 ORTHO05D006611 3.2e-192 676.8 1322 37.4
SalBow5G1296 Salvia bowleyana HOM05D005064 ORTHO05D006611 3.2e-192 676.8 1322 37.4
DCAR_030962 Daucus carota HOM05D005064 ORTHO05D008158 1.9e-184 651.0 830 44.8
HPP92_013858 Vanilla planifolia HOM05D005064 ORTHO05D006611 2.1e-183 647.5 691 49.5
Medtr0191s0030 Medicago truncatula HOM05D005064 ORTHO05D006611 1.1e-181 641.7 752 48.8
BcaB04g17743 Brassica carinata HOM05D005064 ORTHO05D006611 2.0e-181 641.0 1215 36.6
Medtr6g033115 Medicago truncatula HOM05D005064 ORTHO05D006611 1.7e-172 611.3 673 50.1
CDE04G0109 Ceratophyllum demersum HOM05D005064 ORTHO05D006611 1.8e-171 607.8 852 42.6
SEGI_30642 Sequoiadendron giganteum HOM05D005064 ORTHO05D006611 2.5e-160 570.9 805 42.5
Sc07g0001460 Simmondsia chinensis HOM05D005064 ORTHO05D006611 9.5e-152 542.3 975 38.4
CSS0001431 Camellia sinensis var. sinensis HOM05D005064 ORTHO05D006611 2.8e-151 540.8 544 54.0
Oeu026978.1 Olea europaea HOM05D005064 ORTHO05D006611 3.2e-139 500.7 540 52.0
Phvul.006G005800 Phaseolus vulgaris HOM05D005064 ORTHO05D006611 9.2e-139 499.2 538 52.4
Nitab4.5_0001246g0050 Nicotiana tabacum HOM05D005064 ORTHO05D006611 1.2e-138 498.8 802 39.7
Solyc02g050200.2 Solanum lycopersicum HOM05D005064 ORTHO05D006611 6.8e-134 483.0 949 37.3
AagrBONN_evm.TU.Sc2ySwM_362.1800 Anthoceros agrestis HOM05D005064 ORTHO05D006611 8.1e-111 406.4 675 37.2
Haze_21131 Corylus avellana HOM05D005064 ORTHO05D006611 5.3e-110 403.7 835 36.3
Haze_21134 Corylus avellana HOM05D005064 ORTHO05D006611 4.5e-109 400.6 835 36.0
Mapoly0045s0096 Marchantia polymorpha HOM05D005064 ORTHO05D006611 2.4e-102 378.3 692 35.5
Solyc02g050210.2 Solanum lycopersicum HOM05D005064 ORTHO05D006611 1.6e-95 355.5 372 51.3
Phvul.L001612 Phaseolus vulgaris HOM05D005064 ORTHO05D006611 1.4e-91 342.4 339 54.9
Oeu027330.4 Olea europaea HOM05D005064 ORTHO05D006611 1.8e-89 335.5 351 53.0
SEGI_27109 Sequoiadendron giganteum HOM05D005064 ORTHO05D006611 8.7e-89 333.2 421 45.1
Nitab4.5_0021252g0010 Nicotiana tabacum HOM05D005064 ORTHO05D006611 2.0e-80 305.4 604 36.9
unitig_21.g20911 Utricularia gibba HOM05D005064 ORTHO05D006611 1.1e-78 299.7 494 39.5
TPR.G18982 Trifolium pratense HOM05D005064 ORTHO05D006611 9.1e-78 296.6 302 50.3
Nitab4.5_0006212g0010 Nicotiana tabacum HOM05D005064 ORTHO05D006611 9.4e-75 286.6 329 47.1
CBR_g19766 Chara braunii HOM05D005064 ORTHO05D000048 8.5e-68 263.5 407 36.6
SEGI_19397 Sequoiadendron giganteum HOM05D005064 ORTHO05D006611 1.9e-59 235.7 389 39.1
MCO02G178 Micromonas commoda HOM05D005064 ORTHO05D006611 1.0e-36 160.2 644 27.3
CiPaw.09G214600 Carya illinoinensis HOM05D005064 ORTHO05D006611 3.9e-36 158.3 596 29.2
CAN.G989.5 Capsicum annuum HOM05D005064 ORTHO05D000001 1.4e-30 139.8 270 35.2
CBR_g19769 Chara braunii HOM05D005064 ORTHO05D006611 3.1e-25 122.1 316 27.5
Cre13.g566900 Chlamydomonas reinhardtii HOM05D005064 ORTHO05D006611 2.0e-24 119.4 247 32.8
CSS0019886 Camellia sinensis var. sinensis HOM05D005064 ORTHO05D006611 2.5e-19 102.4 215 36.3
Sabra16G0120100 Salix brachista HOM05D005064 ORTHO05D050424 1.2e-10 73.6 58 62.1
Ah.11g042510 Amaranthus hybridus HOM05D005064 ORTHO05D006611 1.4e-09 70.1 265 28.7
DCAR_009651 Daucus carota HOM05D005064 ORTHO05D006611 6.8e-09 67.8 121 41.3


User provided reference genes

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