Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN19G0143 Fragaria x ananassa HOM05D005778 ORTHO05D007245 0.0e+00 1110.5 568 100.0
FvH4_1g23210 Fragaria vesca HOM05D005778 ORTHO05D007245 1.3e-305 1052.4 571 95.3
FAN23G1488 Fragaria x ananassa HOM05D005778 ORTHO05D007245 2.5e-277 958.4 544 92.6
FAN28G2237 Fragaria x ananassa HOM05D005778 ORTHO05D007245 5.3e-243 844.3 468 94.0
FAN26G2893 Fragaria x ananassa HOM05D005778 ORTHO05D007245 2.6e-213 745.7 537 76.9
RcHm_v2.0_Chr2g0117911 Rosa chinensis HOM05D005778 ORTHO05D007245 4.4e-213 745.0 458 86.0
Prupe.6G166800 Prunus persica HOM05D005778 ORTHO05D007245 1.1e-208 730.3 580 69.7
MD15G1335700 Malus domestica HOM05D005778 ORTHO05D007245 1.5e-189 666.8 586 64.7
Prupe.1G550600 Prunus persica HOM05D005778 ORTHO05D007245 1.2e-173 614.0 588 60.9
Atru.chr4.723 Acer truncatum HOM05D005778 ORTHO05D007245 8.3e-172 607.8 588 59.7
CiPaw.03G131700 Carya illinoinensis HOM05D005778 ORTHO05D007245 1.3e-164 583.9 589 59.3
Cfa002785 Carpinus fangiana HOM05D005778 ORTHO05D007245 2.5e-160 569.7 583 57.8
TWI79G0191 Tripterygium wilfordii HOM05D005778 ORTHO05D007245 9.5e-160 567.8 618 54.7
Thecc.01G117000 Theobroma cacao HOM05D005778 ORTHO05D007245 2.8e-159 566.2 585 54.7
Manes.12G145400 Manihot esculenta HOM05D005778 ORTHO05D007245 1.5e-157 560.5 602 54.5
Gorai.011G114700 Gossypium raimondii HOM05D005778 ORTHO05D007245 7.1e-155 551.6 589 54.5
Dinv16426 Davidia involucrata HOM05D005778 ORTHO05D007245 3.5e-154 549.3 543 58.2
MD15G1404100 Malus domestica HOM05D005778 ORTHO05D007245 6.6e-153 545.0 550 57.8
RcHm_v2.0_Chr7g0226611 Rosa chinensis HOM05D005778 ORTHO05D007245 8.7e-153 544.7 581 56.3
Ciclev10025290m.g Citrus clementina HOM05D005778 ORTHO05D007245 7.3e-152 541.6 585 55.2
TAR628G0341 Trochodendron aralioides HOM05D005778 ORTHO05D007245 1.1e-150 537.7 583 54.0
Gohir.D10G105000 Gossypium hirsutum HOM05D005778 ORTHO05D007245 1.3e-148 530.8 589 52.6
CsaV3_6G042140 Cucumis sativus L. HOM05D005778 ORTHO05D007245 1.4e-147 527.3 587 54.5
QL06p031408 Quercus lobata HOM05D005778 ORTHO05D007245 3.0e-145 519.6 690 49.3
ClCG01G015860 Citrullus lanatus HOM05D005778 ORTHO05D007245 9.6e-144 514.6 593 53.0
CANSAT01G2349 Cannabis sativa HOM05D005778 ORTHO05D007245 4.8e-143 512.3 646 50.2
Sed0016319 Sechium edule HOM05D005778 ORTHO05D007245 4.8e-143 512.3 602 52.3
Lj4g0013346 Lotus japonicus HOM05D005778 ORTHO05D007245 4.0e-142 509.2 585 54.9
Potri.007G077400 Populus trichocarpa HOM05D005778 ORTHO05D007245 9.0e-142 508.1 580 54.1
Gohir.A10G082700 Gossypium hirsutum HOM05D005778 ORTHO05D007245 2.0e-141 506.9 515 54.8
Lj4C861G1 Lonicera japonica HOM05D005778 ORTHO05D007245 2.6e-141 506.5 656 49.5
Sabra07G0065400 Salix brachista HOM05D005778 ORTHO05D007245 3.4e-141 506.1 600 53.8
Nn5g28812 Nelumbo nucifera HOM05D005778 ORTHO05D007245 1.7e-140 503.8 582 52.2
PGR119G1966 Punica granatum HOM05D005778 ORTHO05D007245 2.2e-140 503.4 613 51.7
Ca_17674_v3 Cicer arietinum L. HOM05D005778 ORTHO05D007245 1.0e-137 494.6 628 50.5
Haze_25082 Corylus avellana HOM05D005778 ORTHO05D007245 2.5e-136 490.0 666 48.9
TPR.G2233 Trifolium pratense HOM05D005778 ORTHO05D007245 5.6e-136 488.8 543 54.7
arahy.Tifrunner.gnm1.ann1.A9RKWD Arachis hypogaea HOM05D005778 ORTHO05D007245 7.4e-136 488.4 593 52.4
arahy.Tifrunner.gnm1.ann1.2KBC6S Arachis hypogaea HOM05D005778 ORTHO05D007245 9.6e-136 488.0 593 52.6
GSVIVG01022267001 Vitis vinifera HOM05D005778 ORTHO05D007245 2.1e-135 486.9 412 64.8
Medtr8g092300 Medicago truncatula HOM05D005778 ORTHO05D007245 8.1e-135 485.0 583 51.6
DCAR_016672 Daucus carota HOM05D005778 ORTHO05D007245 1.8e-134 483.8 586 50.2
Actinidia31890 Actinidia chinensis HOM05D005778 ORTHO05D007245 2.4e-134 483.4 584 52.7
Glyma.05G186200 Glycine max HOM05D005778 ORTHO05D007245 4.5e-133 479.2 642 48.6
Phvul.002G267400 Phaseolus vulgaris HOM05D005778 ORTHO05D007245 1.6e-130 470.7 687 45.7
VMungo0251G2366 Vigna mungo HOM05D005778 ORTHO05D007245 1.6e-130 470.7 687 46.1
PSO170G4940 Papaver somniferum HOM05D005778 ORTHO05D007245 5.6e-128 462.2 551 50.1
THA.LOC104804137 Tarenaya hassleriana HOM05D005778 ORTHO05D007245 1.5e-125 454.1 585 50.3
Eucgr.I00295 Eucalyptus grandis HOM05D005778 ORTHO05D007245 5.8e-125 452.2 349 65.0
Sopen04g022870 Solanum pennellii HOM05D005778 ORTHO05D007245 1.3e-124 451.1 650 46.0
Rhsim10G0147200 Rhododendron simsii HOM05D005778 ORTHO05D007245 1.7e-124 450.7 327 69.1
Solyc04g051490.3 Solanum lycopersicum HOM05D005778 ORTHO05D007245 1.7e-124 450.7 644 45.7
CSS0023800 Camellia sinensis var. sinensis HOM05D005778 ORTHO05D007245 3.8e-124 449.5 417 60.9
CDE07G0129 Ceratophyllum demersum HOM05D005778 ORTHO05D007245 3.8e-124 449.5 604 46.9
HanXRQChr09g0254171 Helianthus annuus HOM05D005778 ORTHO05D007245 3.8e-124 449.5 619 45.7
Thhalv10000104m.g Eutrema salsugineum HOM05D005778 ORTHO05D007245 6.5e-124 448.7 594 47.3
BolC7t42688H Brassica oleracea HOM05D005778 ORTHO05D007245 8.4e-124 448.4 578 48.4
SalBow5G2484 Salvia bowleyana HOM05D005778 ORTHO05D007245 8.4e-124 448.4 647 47.0
Lalb_Chr12g0203421 Lupinus albus HOM05D005778 ORTHO05D007245 1.4e-123 447.6 554 49.8
BcaC07g41093 Brassica carinata HOM05D005778 ORTHO05D007245 1.2e-122 444.5 596 47.7
BolC8t51659H Brassica oleracea HOM05D005778 ORTHO05D007245 1.2e-122 444.5 596 47.7
Peaxi162Scf00025g03317 Petunia axillaris HOM05D005778 ORTHO05D007245 4.6e-122 442.6 635 46.6
C08p40960 Brassica napus HOM05D005778 ORTHO05D007245 1.8e-121 440.7 596 47.3
MELO3C007452.2 Cucumis melo HOM05D005778 ORTHO05D007245 1.9e-120 437.2 642 46.1
SGA_v2.0_scaffold47G17685 Striga asiatica HOM05D005778 ORTHO05D007245 1.9e-120 437.2 664 43.2
BcaB08g35041 Brassica carinata HOM05D005778 ORTHO05D007245 4.3e-120 436.0 578 47.1
Nitab4.5_0000184g0070 Nicotiana tabacum HOM05D005778 ORTHO05D007245 4.3e-120 436.0 662 45.9
Psat7g049960 Pisum sativum HOM05D005778 ORTHO05D007245 5.7e-120 435.6 362 64.6
Lsat_1_v5_gn_4_138380 Lactuca sativa HOM05D005778 ORTHO05D007245 2.2e-119 433.7 502 51.0
CAN.G860.4 Capsicum annuum HOM05D005778 ORTHO05D007245 8.2e-119 431.8 607 46.6
Sp4g01220 Schrenkiella parvula HOM05D005778 ORTHO05D007245 8.2e-119 431.8 634 45.1
CARHR113310 Cardamine hirsuta HOM05D005778 ORTHO05D007245 1.1e-118 431.4 580 46.6
Sc03g0004580 Simmondsia chinensis HOM05D005778 ORTHO05D007245 2.4e-118 430.3 574 48.3
BraA09t41166Z Brassica rapa HOM05D005778 ORTHO05D007245 3.1e-118 429.9 570 48.1
Aqoxy5G02041 Aquilegia oxysepala HOM05D005778 ORTHO05D007245 4.1e-118 429.5 536 49.6
A09p57740 Brassica napus HOM05D005778 ORTHO05D007245 6.9e-118 428.7 570 47.7
Carub.0004s0131 Capsella rubella HOM05D005778 ORTHO05D007245 1.5e-117 427.6 580 46.0
AL4G11490 Arabidopsis lyrata HOM05D005778 ORTHO05D007245 3.4e-117 426.4 580 46.4
Cc07_g16660 Coffea canephora HOM05D005778 ORTHO05D007245 7.7e-117 425.2 316 66.1
Migut.L00055 Erythranthe guttata HOM05D005778 ORTHO05D007245 3.2e-115 419.9 375 61.9
AT2G22140 Arabidopsis thaliana HOM05D005778 ORTHO05D007245 4.2e-115 419.5 577 45.9
vmacro12878 Vaccinium macrocarpon HOM05D005778 ORTHO05D007245 9.4e-115 418.3 482 51.2
Aa31LG7G14570 Aethionema arabicum HOM05D005778 ORTHO05D007245 3.9e-113 412.9 618 43.2
ATR0800G169 Amborella trichopoda HOM05D005778 ORTHO05D007245 4.8e-111 406.0 363 59.8
ECA238G1732 Erigeron canadensis HOM05D005778 ORTHO05D007245 1.0e-108 398.3 585 45.1
Aqoxy4G02517 Aquilegia oxysepala HOM05D005778 ORTHO05D007245 3.2e-107 393.3 446 50.7
Hund19626 Selenicereus undatus HOM05D005778 ORTHO05D007245 1.2e-106 391.3 419 51.3
HPP92_017324 Vanilla planifolia HOM05D005778 ORTHO05D007245 3.0e-105 386.7 605 42.6
Thhalv10000122m.g Eutrema salsugineum HOM05D005778 ORTHO05D007245 4.4e-104 382.9 569 44.8
unitig_37.g12529 Utricularia gibba HOM05D005778 ORTHO05D007245 2.2e-103 380.6 399 53.9
MSTRG.15762 Avicennia marina HOM05D005778 ORTHO05D007245 1.5e-101 374.4 282 67.0
BolC4t26687H Brassica oleracea HOM05D005778 ORTHO05D007245 7.7e-101 372.1 481 47.8
FvH4_5g31350 Fragaria vesca HOM05D005778 ORTHO05D007245 3.2e-99 366.7 308 64.3
Oeu001980.1 Olea europaea HOM05D005778 ORTHO05D007245 3.6e-98 363.2 689 37.9
CARHR112840 Cardamine hirsuta HOM05D005778 ORTHO05D007245 4.7e-98 362.8 375 53.1
AL4G11110 Arabidopsis lyrata HOM05D005778 ORTHO05D007245 1.0e-97 361.7 567 41.4
BcaC02g08761 Brassica carinata HOM05D005778 ORTHO05D007245 1.8e-97 360.9 472 47.0
C04p50950 Brassica napus HOM05D005778 ORTHO05D007245 1.8e-97 360.9 472 47.0
Sp4g00940 Schrenkiella parvula HOM05D005778 ORTHO05D007245 2.3e-97 360.5 572 43.0
Carub.0004s0085 Capsella rubella HOM05D005778 ORTHO05D007245 3.9e-97 359.8 359 52.9
A04p16440 Brassica napus HOM05D005778 ORTHO05D007245 2.0e-93 347.4 477 45.9
Hund03512 Selenicereus undatus HOM05D005778 ORTHO05D007245 2.6e-93 347.1 652 39.4
BraA04t17279Z Brassica rapa HOM05D005778 ORTHO05D007245 7.7e-93 345.5 477 45.7
AT2G21800 Arabidopsis thaliana HOM05D005778 ORTHO05D007245 1.2e-90 338.2 580 41.4
BcaB06g27789 Brassica carinata HOM05D005778 ORTHO05D007245 8.0e-90 335.5 476 43.9
Cpa.g.sc72.53 Carica papaya HOM05D005778 ORTHO05D007245 4.5e-85 319.7 447 47.2
EL10Ac6g15224 Beta vulgaris HOM05D005778 ORTHO05D007245 2.5e-83 313.9 408 46.6
Os04g0648700 Oryza sativa ssp. japonica HOM05D005778 ORTHO05D007245 4.2e-83 313.2 505 40.6
Zm00001eb068550 Zea mays HOM05D005778 ORTHO05D007245 2.8e-79 300.4 430 43.5
AUR62003644 Chenopodium quinoa HOM05D005778 ORTHO05D007245 5.0e-76 289.7 429 44.5
AagrBONN_evm.TU.Sc2ySwM_228.2963 Anthoceros agrestis HOM05D005778 ORTHO05D007245 2.2e-71 274.2 346 42.2
Mapoly0041s0060 Marchantia polymorpha HOM05D005778 ORTHO05D007245 4.1e-70 270.0 350 41.1
Pp3c5_3310 Physcomitrium patens HOM05D005778 ORTHO05D007245 3.1e-65 253.8 347 40.6
Glyma.08G144700 Glycine max HOM05D005778 ORTHO05D007245 7.5e-64 249.2 450 39.8
COL.COLO4_03471 Corchorus olitorius HOM05D005778 ORTHO05D007245 3.7e-63 246.9 594 34.7
Nitab4.5_0011929g0010 Nicotiana tabacum HOM05D005778 ORTHO05D007245 6.0e-61 239.6 282 51.8
FAN18G1125 Fragaria x ananassa HOM05D005778 ORTHO05D007245 1.5e-56 224.9 328 49.1
Nitab4.5_0021115g0010 Nicotiana tabacum HOM05D005778 ORTHO05D007245 6.4e-55 219.5 273 50.9
SMO352G0072 Selaginella moellendorffii HOM05D005778 ORTHO05D007245 1.2e-53 215.3 290 42.1
Cpa.g.sc72.54 Carica papaya HOM05D005778 ORTHO05D007245 1.1e-49 202.2 134 76.9
CBR_g21043 Chara braunii HOM05D005778 ORTHO05D007245 1.7e-44 184.9 400 33.2
SMO288G0013 Selaginella moellendorffii HOM05D005778 ORTHO05D007245 1.4e-33 148.7 298 33.6
Hma1.2p1_0070F.1_g037570 Hydrangea macrophylla HOM05D005778 ORTHO05D007245 6.9e-33 146.4 111 72.1
SEGI_24036 Sequoiadendron giganteum HOM05D005778 ORTHO05D007245 9.9e-32 142.5 94 75.5
PGSC0003DMG400019704 Solanum tuberosum HOM05D005778 ORTHO05D007245 1.3e-23 115.5 68 79.4
SalBow5G4900 Salvia bowleyana HOM05D005778 ORTHO05D007245 4.3e-19 100.5 182 37.9
CARHR113290 Cardamine hirsuta HOM05D005778 ORTHO05D007245 3.7e-18 97.4 75 57.3
Psat7g050000 Pisum sativum HOM05D005778 ORTHO05D007245 1.9e-14 85.1 173 41.6
Oeu017817.1 Olea europaea HOM05D001353 ORTHO05D002359 5.5e-14 83.6 66 48.5
Oeu028353.1 Olea europaea HOM05D005778 ORTHO05D007245 3.7e-10 70.9 45 77.8
MSTRG.15763 Avicennia marina HOM05D005778 ORTHO05D038954 1.1e-09 69.3 358 28.2
SMO352G0093 Selaginella moellendorffii HOM05D005778 ORTHO05D007245 9.0e-09 66.2 53 60.4
CARHR113280 Cardamine hirsuta HOM05D000125 ORTHO05D009513 7.6e-08 63.2 40 62.5
SEGI_25471 Sequoiadendron giganteum HOM05D005778 ORTHO05D007245 1.9e-06 58.5 62 48.4


User provided reference genes

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