Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN18G2901 Fragaria x ananassa HOM05D005418 ORTHO05D006724 6.5e-108 394.0 194 100.0
FAN08G1767 Fragaria x ananassa HOM05D005418 ORTHO05D006724 1.6e-106 389.4 194 98.5
FAN13G2408 Fragaria x ananassa HOM05D005418 ORTHO05D006724 2.7e-106 388.7 194 98.5
RcHm_v2.0_Chr7g0177871 Rosa chinensis HOM05D005418 ORTHO05D006724 6.3e-103 377.5 194 95.4
Prupe.5G237600 Prunus persica HOM05D005418 ORTHO05D006724 4.6e-98 361.3 194 89.7
MD14G1240000 Malus domestica HOM05D005418 ORTHO05D006724 3.0e-97 358.6 194 87.6
GSVIVG01037420001 Vitis vinifera HOM05D005418 ORTHO05D006724 2.5e-96 355.5 194 87.1
Ca_25975_v3 Cicer arietinum L. HOM05D005418 ORTHO05D006724 3.3e-96 355.1 194 87.6
TPR.G14843 Trifolium pratense HOM05D005418 ORTHO05D006724 5.7e-96 354.4 194 88.7
Lj2g0014184 Lotus japonicus HOM05D005418 ORTHO05D006724 4.8e-95 351.3 194 86.6
Thecc.10G098100 Theobroma cacao HOM05D005418 ORTHO05D006724 6.3e-95 350.9 194 86.1
Duzib128G1895 Durio zibethinus HOM05D005418 ORTHO05D006724 1.8e-94 349.4 194 85.6
Lalb_Chr22g0353611 Lupinus albus HOM05D005418 ORTHO05D006724 1.8e-94 349.4 194 87.1
Psat1g028800 Pisum sativum HOM05D005418 ORTHO05D006724 2.4e-94 349.0 194 86.1
TAR365G0064 Trochodendron aralioides HOM05D005418 ORTHO05D006724 2.4e-94 349.0 194 86.1
Gohir.A05G289300 Gossypium hirsutum HOM05D005418 ORTHO05D006724 3.1e-94 348.6 194 85.1
Gohir.D05G290700 Gossypium hirsutum HOM05D005418 ORTHO05D006724 3.1e-94 348.6 194 85.1
Gorai.009G305700 Gossypium raimondii HOM05D005418 ORTHO05D006724 3.1e-94 348.6 194 85.1
Manes.14G173200 Manihot esculenta HOM05D005418 ORTHO05D006724 9.0e-94 347.1 194 85.1
Cpa.g.sc64.48 Carica papaya HOM05D005418 ORTHO05D006724 1.2e-93 346.7 194 86.1
Atru.chr9.1604 Acer truncatum HOM05D005418 ORTHO05D006724 4.5e-93 344.7 194 84.0
Cfa005619 Carpinus fangiana HOM05D005418 ORTHO05D006724 5.9e-93 344.4 194 85.6
COL.COLO4_07665 Corchorus olitorius HOM05D005418 ORTHO05D006724 5.9e-93 344.4 194 82.5
Solyc03g097990.3 Solanum lycopersicum HOM05D005418 ORTHO05D006724 5.9e-93 344.4 194 85.1
Sopen03g028700 Solanum pennellii HOM05D005418 ORTHO05D006724 5.9e-93 344.4 194 85.1
Manes.06G002300 Manihot esculenta HOM05D005418 ORTHO05D006724 7.7e-93 344.0 194 84.5
vmacro17855 Vaccinium macrocarpon HOM05D005418 ORTHO05D006724 7.7e-93 344.0 194 85.1
arahy.Tifrunner.gnm1.ann1.20VKS9 Arachis hypogaea HOM05D005418 ORTHO05D006724 1.0e-92 343.6 194 83.5
PSO210G6190 Papaver somniferum HOM05D005418 ORTHO05D006724 1.0e-92 343.6 194 83.0
PGSC0003DMG400033680 Solanum tuberosum HOM05D005418 ORTHO05D006724 1.0e-92 343.6 194 85.1
Cc04_g09290 Coffea canephora HOM05D005418 ORTHO05D006724 1.3e-92 343.2 194 83.5
CSS0002924 Camellia sinensis var. sinensis HOM05D005418 ORTHO05D006724 2.9e-92 342.0 194 85.6
QL10p031782 Quercus lobata HOM05D005418 ORTHO05D006724 6.5e-92 340.9 193 84.5
CiPaw.15G148000 Carya illinoinensis HOM05D005418 ORTHO05D006724 8.5e-92 340.5 194 84.5
Glyma.07G106200 Glycine max HOM05D005418 ORTHO05D006724 8.5e-92 340.5 194 82.5
Hund01906 Selenicereus undatus HOM05D005418 ORTHO05D006724 1.9e-91 339.3 200 82.5
COL.COLO4_34153 Corchorus olitorius HOM05D005418 ORTHO05D006724 2.5e-91 339.0 194 80.9
Peaxi162Scf00171g00918 Petunia axillaris HOM05D005418 ORTHO05D006724 2.5e-91 339.0 194 83.0
Potri.015G036600 Populus trichocarpa HOM05D005418 ORTHO05D006724 2.5e-91 339.0 194 83.0
THA.LOC104812146 Tarenaya hassleriana HOM05D005418 ORTHO05D006724 3.2e-91 338.6 194 82.5
CAN.G637.36 Capsicum annuum HOM05D005418 ORTHO05D006724 7.2e-91 337.4 194 82.5
Medtr0332s0040 Medicago truncatula HOM05D005418 ORTHO05D006724 7.2e-91 337.4 187 87.2
Aqoxy5G00519 Aquilegia oxysepala HOM05D005418 ORTHO05D006724 9.4e-91 337.0 194 83.5
MSTRG.9356 Avicennia marina HOM05D005418 ORTHO05D006724 9.4e-91 337.0 194 82.5
TWI60G0409 Tripterygium wilfordii HOM05D005418 ORTHO05D006724 9.4e-91 337.0 194 82.5
Aqoxy6G02988 Aquilegia oxysepala HOM05D005418 ORTHO05D006724 2.1e-90 335.9 194 83.0
CARHR066900 Cardamine hirsuta HOM05D005418 ORTHO05D006724 2.1e-90 335.9 194 82.0
AT1G73820 Arabidopsis thaliana HOM05D005418 ORTHO05D006724 3.6e-90 335.1 194 81.4
arahy.Tifrunner.gnm1.ann1.XQM4JL Arachis hypogaea HOM05D005418 ORTHO05D006724 3.6e-90 335.1 194 83.0
Nn1g06291 Nelumbo nucifera HOM05D005418 ORTHO05D006724 3.6e-90 335.1 194 82.0
AL2G33630 Arabidopsis lyrata HOM05D005418 ORTHO05D006724 4.6e-90 334.7 194 81.4
Thhalv10019100m.g Eutrema salsugineum HOM05D005418 ORTHO05D006724 4.6e-90 334.7 194 81.4
Sp5g29010 Schrenkiella parvula HOM05D005418 ORTHO05D006724 4.6e-90 334.7 194 81.4
Phvul.004G147300 Phaseolus vulgaris HOM05D005418 ORTHO05D006724 6.1e-90 334.3 194 80.9
TWI15G1138 Tripterygium wilfordii HOM05D005418 ORTHO05D006724 6.1e-90 334.3 194 81.4
Ciclev10005966m.g Citrus clementina HOM05D005418 ORTHO05D006724 7.9e-90 334.0 194 82.0
PGR102G0744 Punica granatum HOM05D005418 ORTHO05D006724 7.9e-90 334.0 195 82.1
Carub.0002s2057 Capsella rubella HOM05D005418 ORTHO05D006724 1.4e-89 333.2 194 80.9
MELO3C001923.2 Cucumis melo HOM05D005418 ORTHO05D006724 1.8e-89 332.8 194 82.5
CsaV3_1G004910 Cucumis sativus L. HOM05D005418 ORTHO05D006724 1.8e-89 332.8 194 82.0
CANSAT78G1374 Cannabis sativa HOM05D005418 ORTHO05D006724 3.9e-89 331.6 194 80.4
Nitab4.5_0000430g0100 Nicotiana tabacum HOM05D005418 ORTHO05D006724 5.1e-89 331.3 214 76.6
BcaB03g15730 Brassica carinata HOM05D005418 ORTHO05D006724 8.8e-89 330.5 194 80.9
SalBow1G6390 Salvia bowleyana HOM05D005418 ORTHO05D006724 1.1e-88 330.1 194 79.9
SGA_v2.0_scaffold40G15645 Striga asiatica HOM05D005418 ORTHO05D006724 1.1e-88 330.1 194 83.0
VMungo0464G1360 Vigna mungo HOM05D005418 ORTHO05D006724 1.5e-88 329.7 194 79.9
Nitab4.5_0006110g0060 Nicotiana tabacum HOM05D005418 ORTHO05D006724 2.0e-88 329.3 214 76.2
BcaC08g45620 Brassica carinata HOM05D005418 ORTHO05D006724 2.5e-88 328.9 194 80.9
A07p29640 Brassica napus HOM05D005418 ORTHO05D006724 2.5e-88 328.9 194 80.9
BraA07t30605Z Brassica rapa HOM05D005418 ORTHO05D006724 2.5e-88 328.9 194 80.9
Sed0019275 Sechium edule HOM05D005418 ORTHO05D006724 5.7e-88 327.8 194 79.9
BolC6t38495H Brassica oleracea HOM05D005418 ORTHO05D006724 7.4e-88 327.4 194 80.4
Migut.D01215 Erythranthe guttata HOM05D005418 ORTHO05D006724 1.3e-87 326.6 194 78.9
Actinidia09063 Actinidia chinensis HOM05D005418 ORTHO05D006724 2.8e-87 325.5 194 80.4
HanXRQChr14g0431131 Helianthus annuus HOM05D005418 ORTHO05D006724 2.8e-87 325.5 194 79.9
C06p33820 Brassica napus HOM05D005418 ORTHO05D006724 3.7e-87 325.1 194 79.9
SEGI_01195 Sequoiadendron giganteum HOM05D005418 ORTHO05D006724 6.3e-87 324.3 194 76.8
FvH4_5g17750 Fragaria vesca HOM05D005418 ORTHO05D006724 8.2e-87 323.9 161 98.8
unitig_899.g14817 Utricularia gibba HOM05D005418 ORTHO05D006724 8.2e-87 323.9 194 80.4
ClCG04G012830 Citrullus lanatus HOM05D005418 ORTHO05D006724 3.1e-86 322.0 214 74.8
Actinidia06835 Actinidia chinensis HOM05D005418 ORTHO05D006724 2.6e-85 318.9 225 71.6
SHI12596 Sapria himalayana HOM05D005418 ORTHO05D006724 4.5e-85 318.2 193 79.8
AUR62036432 Chenopodium quinoa HOM05D005418 ORTHO05D006724 5.9e-85 317.8 210 74.8
Sabra15G0030200 Salix brachista HOM05D005418 ORTHO05D006724 5.9e-85 317.8 235 68.5
CDE12G0113 Ceratophyllum demersum HOM05D005418 ORTHO05D006724 1.3e-84 316.6 194 77.3
Lsat_1_v5_gn_2_11960 Lactuca sativa HOM05D005418 ORTHO05D006724 6.5e-84 314.3 187 79.1
ECA238G0283 Erigeron canadensis HOM05D005418 ORTHO05D006724 1.1e-83 313.5 188 78.7
ATR0827G099 Amborella trichopoda HOM05D005418 ORTHO05D006724 1.9e-83 312.8 178 82.6
Aa31LG4G11570 Aethionema arabicum HOM05D005418 ORTHO05D006724 2.5e-83 312.4 177 84.7
MD06G1233000 Malus domestica HOM05D005418 ORTHO05D006724 7.2e-83 310.8 210 72.9
Mapoly0058s0033 Marchantia polymorpha HOM05D005418 ORTHO05D006724 1.6e-82 309.7 194 74.2
Thhalv10019803m.g Eutrema salsugineum HOM05D005418 ORTHO05D006724 3.0e-81 305.4 194 76.8
PSO832G3604 Papaver somniferum HOM05D005418 ORTHO05D006724 1.1e-80 303.5 194 75.3
Lj9C416T2 Lonicera japonica HOM05D005418 ORTHO05D006724 1.5e-80 303.1 194 77.3
Pp3c8_14260 Physcomitrium patens HOM05D005418 ORTHO05D006724 2.6e-80 302.4 194 72.7
Pp3c23_19050 Physcomitrium patens HOM05D005418 ORTHO05D006724 3.3e-80 302.0 194 72.7
MBI17_g10951_MAGBIO Magnolia biondii HOM05D005418 ORTHO05D006724 1.3e-79 300.1 174 81.6
Zm00001eb139180 Zea mays HOM05D005418 ORTHO05D006724 2.2e-79 299.3 194 71.1
SMO232G0125 Selaginella moellendorffii HOM05D005418 ORTHO05D006724 6.3e-79 297.7 195 69.7
Os12g0168200 Oryza sativa ssp. japonica HOM05D005418 ORTHO05D006724 3.1e-78 295.4 194 70.1
Sabra15G0031100 Salix brachista HOM05D005418 ORTHO05D006724 7.0e-78 294.3 297 54.2
Rhsim08G0113500 Rhododendron simsii HOM05D005418 ORTHO05D006724 4.7e-74 281.6 274 57.3
Hma1.2p1_0471F.1_g159370 Hydrangea macrophylla HOM05D005418 ORTHO05D006724 5.2e-73 278.1 283 55.5
DCAR_011383 Daucus carota HOM05D000073 ORTHO05D000033 1.1e-72 276.9 161 82.6
HPP92_026203 Vanilla planifolia HOM05D005418 ORTHO05D006724 1.7e-71 273.1 160 81.2
CBR_g52356 Chara braunii HOM05D005418 ORTHO05D006724 2.2e-71 272.7 172 73.3
Haze_15514 Corylus avellana HOM05D005418 ORTHO05D006724 2.3e-57 226.1 120 89.2
CDE11G0106 Ceratophyllum demersum HOM05D005418 ORTHO05D006724 3.0e-57 225.7 120 87.5
MBI17_g45323_MAGBIO Magnolia biondii HOM05D005418 ORTHO05D006724 1.3e-55 220.3 120 85.0
HPP92_016144 Vanilla planifolia HOM05D005418 ORTHO05D006724 3.1e-54 215.7 134 76.9
Cre02.g145300 Chlamydomonas reinhardtii HOM05D005418 ORTHO05D006724 5.9e-53 211.5 178 56.2
Pp3c24_6390 Physcomitrium patens HOM05D005418 ORTHO05D006724 5.9e-53 211.5 129 77.5
EL10Ac4g07599 Beta vulgaris HOM05D005418 ORTHO05D006724 1.8e-49 199.9 123 77.2
AUR62017076 Chenopodium quinoa HOM05D005418 ORTHO05D006724 4.0e-49 198.7 123 78.0
PRCOL_00006990 Prasinoderma coloniale HOM05D005418 ORTHO05D006724 5.2e-49 198.4 191 50.8
Dinv09076 Davidia involucrata HOM05D005418 ORTHO05D006724 4.1e-46 188.7 114 80.7
Thhalv10019340m.g Eutrema salsugineum HOM05D005418 ORTHO05D006724 4.6e-45 185.3 114 76.3
AagrBONN_evm.TU.Sc2ySwM_344.1040 Anthoceros agrestis HOM05D005418 ORTHO05D006724 8.0e-42 174.5 122 66.4
Sc12g0008750 Simmondsia chinensis HOM05D005418 ORTHO05D006724 8.0e-42 174.5 112 72.3
MCO08G311 Micromonas commoda HOM05D005418 ORTHO05D006724 1.0e-41 174.1 174 51.1
PGSC0003DMG400019995 Solanum tuberosum HOM05D005418 ORTHO05D006724 2.0e-40 169.9 99 79.8
CDE01G0467 Ceratophyllum demersum HOM05D005418 ORTHO05D006724 1.3e-39 167.2 93 86.0
Oeu036611.1 Olea europaea HOM05D005418 ORTHO05D006724 1.5e-35 153.7 89 84.3
Cfa023691 Carpinus fangiana HOM05D005418 ORTHO05D006724 2.5e-35 152.9 180 44.4
A07p39670 Brassica napus HOM05D005418 ORTHO05D006724 7.5e-32 141.4 88 79.5
BraA07t31516Z Brassica rapa HOM05D005418 ORTHO05D006724 7.5e-32 141.4 88 79.5
Ah.06g181320 Amaranthus hybridus HOM05D005418 ORTHO05D006724 3.7e-31 139.0 73 87.7
EL10Ac4g07600 Beta vulgaris HOM05D005418 ORTHO05D006724 4.9e-31 138.7 76 82.9
BcaC08g46801 Brassica carinata HOM05D005418 ORTHO05D006724 6.4e-31 138.3 73 87.7
C06p47960 Brassica napus HOM05D005418 ORTHO05D006724 6.4e-31 138.3 73 87.7
BolC6t39831H Brassica oleracea HOM05D005418 ORTHO05D006724 6.4e-31 138.3 73 87.7
Sc12g0008760 Simmondsia chinensis HOM05D005418 ORTHO05D006724 6.4e-31 138.3 71 88.7
Dinv09075 Davidia involucrata HOM05D005418 ORTHO05D006724 1.2e-26 124.0 64 87.5
Eucgr.J01305 Eucalyptus grandis HOM05D005418 ORTHO05D006724 3.3e-19 99.4 74 64.9
COL.COLO4_32865 Corchorus olitorius HOM05D005418 ORTHO05D006724 4.7e-18 95.5 59 76.3
COL.COLO4_34165 Corchorus olitorius HOM05D005418 ORTHO05D006724 2.7e-13 79.7 55 70.9
Eucgr.J01328 Eucalyptus grandis HOM05D005418 ORTHO05D006724 4.6e-13 79.0 83 50.6
Eucgr.J01334 Eucalyptus grandis HOM05D005418 ORTHO05D006724 4.6e-13 79.0 83 50.6
COL.COLO4_07708 Corchorus olitorius HOM05D005418 ORTHO05D006724 6.0e-13 78.6 84 51.2
Sabra15G0030300 Salix brachista HOM05D005418 ORTHO05D012650 1.1e-11 74.3 40 87.5
MBI17_g40296_MAGBIO Magnolia biondii HOM05D005418 ORTHO05D006724 1.4e-09 67.4 92 44.6
COL.COLO4_23669 Corchorus olitorius HOM05D005418 ORTHO05D158711 3.1e-09 66.2 56 58.9


User provided reference genes

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