Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN17G0887 Fragaria x ananassa HOM05D005984 ORTHO05D007754 1.9e-221 772.3 420 100.0
FAN07G1379 Fragaria x ananassa HOM05D005984 ORTHO05D007754 5.0e-182 641.3 438 85.2
FAN12G1392 Fragaria x ananassa HOM05D005984 ORTHO05D007754 5.6e-165 584.7 438 79.7
FvH4_4g36890 Fragaria vesca HOM05D005984 ORTHO05D007754 6.2e-164 581.3 439 79.7
RcHm_v2.0_Chr4g0446671 Rosa chinensis HOM05D005984 ORTHO05D007754 1.6e-148 530.0 439 75.2
Prupe.1G347100 Prunus persica HOM05D005984 ORTHO05D007754 9.0e-131 471.1 444 66.4
MD13G1005900 Malus domestica HOM05D005984 ORTHO05D007754 2.9e-129 466.1 440 61.1
MD16G1002000 Malus domestica HOM05D005984 ORTHO05D007754 3.8e-129 465.7 435 66.0
CANSAT56G2432 Cannabis sativa HOM05D005984 ORTHO05D007754 4.3e-125 452.2 424 64.9
GSVIVG01012045001 Vitis vinifera HOM05D005984 ORTHO05D007754 9.6e-125 451.1 435 59.1
Dinv11718 Davidia involucrata HOM05D005984 ORTHO05D007754 2.4e-123 446.4 438 64.2
CsaV3_7G030600 Cucumis sativus L. HOM05D005984 ORTHO05D007754 1.7e-121 440.3 432 59.0
CSS0012805 Camellia sinensis var. sinensis HOM05D005984 ORTHO05D007754 4.9e-121 438.7 437 58.4
CDE04G0799 Ceratophyllum demersum HOM05D005984 ORTHO05D007754 1.4e-120 437.2 423 65.0
Cpa.g.sc44.38 Carica papaya HOM05D005984 ORTHO05D007754 7.1e-120 434.9 433 59.4
TAR629G1998 Trochodendron aralioides HOM05D005984 ORTHO05D007754 1.2e-119 434.1 435 59.3
ClCG09G004540 Citrullus lanatus HOM05D005984 ORTHO05D007754 1.6e-119 433.7 431 58.2
Lj3A850G95 Lonicera japonica HOM05D005984 ORTHO05D007754 2.7e-119 433.0 432 58.6
CiPaw.06G060100 Carya illinoinensis HOM05D005984 ORTHO05D007754 4.6e-119 432.2 458 57.9
CDE07G0658 Ceratophyllum demersum HOM05D005984 ORTHO05D007754 4.6e-119 432.2 436 61.5
Hma1.2p1_0122F.1_g057600 Hydrangea macrophylla HOM05D005984 ORTHO05D007754 4.6e-119 432.2 441 57.4
vmacro08597 Vaccinium macrocarpon HOM05D005984 ORTHO05D007754 6.0e-119 431.8 450 60.9
Thecc.02G160200 Theobroma cacao HOM05D005984 ORTHO05D007754 1.0e-118 431.0 428 58.9
Sed0023953 Sechium edule HOM05D005984 ORTHO05D007754 1.3e-118 430.6 426 62.4
CAN.G157.24 Capsicum annuum HOM05D005984 ORTHO05D007754 5.1e-118 428.7 428 57.5
Lalb_Chr03g0024761 Lupinus albus HOM05D005984 ORTHO05D007754 5.1e-118 428.7 450 61.8
DCAR_002576 Daucus carota HOM05D005984 ORTHO05D007754 3.3e-117 426.0 389 59.6
Aqoxy3G04258 Aquilegia oxysepala HOM05D005984 ORTHO05D007754 5.7e-117 425.2 449 55.7
Lj3g0024041 Lotus japonicus HOM05D005984 ORTHO05D007754 7.4e-117 424.9 434 62.7
Ciclev10031672m.g Citrus clementina HOM05D005984 ORTHO05D007754 9.7e-117 424.5 437 60.0
Manes.11G108100 Manihot esculenta HOM05D005984 ORTHO05D007754 9.7e-117 424.5 396 65.2
Sed0006813 Sechium edule HOM05D005984 ORTHO05D007754 1.3e-116 424.1 418 58.4
Gohir.A03G164600 Gossypium hirsutum HOM05D005984 ORTHO05D007754 2.8e-116 422.9 453 57.8
Gohir.D02G187800 Gossypium hirsutum HOM05D005984 ORTHO05D007754 3.7e-116 422.5 452 57.7
arahy.Tifrunner.gnm1.ann1.0C6YUW Arachis hypogaea HOM05D005984 ORTHO05D007754 4.8e-116 422.2 465 54.6
PSO782G0234 Papaver somniferum HOM05D005984 ORTHO05D007754 4.8e-116 422.2 444 56.8
arahy.Tifrunner.gnm1.ann1.B6F48P Arachis hypogaea HOM05D005984 ORTHO05D007754 6.3e-116 421.8 464 54.7
Gorai.005G210500 Gossypium raimondii HOM05D005984 ORTHO05D007754 6.3e-116 421.8 452 57.5
PSO063G6567 Papaver somniferum HOM05D005984 ORTHO05D007754 6.3e-116 421.8 446 56.5
ECA246G1868 Erigeron canadensis HOM05D005984 ORTHO05D007754 1.4e-115 420.6 390 64.1
Cfa008738 Carpinus fangiana HOM05D005984 ORTHO05D007754 1.8e-115 420.2 444 56.1
Glyma.11G100800 Glycine max HOM05D005984 ORTHO05D007754 1.8e-115 420.2 432 56.9
VMungo1127G1047 Vigna mungo HOM05D005984 ORTHO05D007754 3.1e-115 419.5 387 61.0
PGSC0003DMG400002324 Solanum tuberosum HOM05D005984 ORTHO05D007754 6.9e-115 418.3 413 56.9
Medtr4g075040 Medicago truncatula HOM05D005984 ORTHO05D007754 1.2e-114 417.5 438 56.8
Actinidia38413 Actinidia chinensis HOM05D005984 ORTHO05D007754 1.5e-114 417.2 436 56.7
Phvul.011G029800 Phaseolus vulgaris HOM05D005984 ORTHO05D007754 1.5e-114 417.2 434 56.0
Sabra07G0060100 Salix brachista HOM05D005984 ORTHO05D007754 1.5e-114 417.2 429 55.2
TWI53G1952 Tripterygium wilfordii HOM05D005984 ORTHO05D007754 2.0e-114 416.8 422 58.1
Actinidia13710 Actinidia chinensis HOM05D005984 ORTHO05D007754 2.6e-114 416.4 441 56.2
COL.COLO4_19602 Corchorus olitorius HOM05D005984 ORTHO05D007754 2.6e-114 416.4 474 54.0
Sopen02g003530 Solanum pennellii HOM05D005984 ORTHO05D007754 2.6e-114 416.4 431 56.1
TPR.G32343 Trifolium pratense HOM05D005984 ORTHO05D007754 2.6e-114 416.4 435 56.3
Aa31LG11G2610 Aethionema arabicum HOM05D005984 ORTHO05D007754 4.5e-114 415.6 443 59.8
Duzib052G0297 Durio zibethinus HOM05D005984 ORTHO05D007754 5.9e-114 415.2 434 56.2
Glyma.12G026900 Glycine max HOM05D005984 ORTHO05D007754 5.9e-114 415.2 432 56.9
VMungo0647G2306 Vigna mungo HOM05D005984 ORTHO05D007754 5.9e-114 415.2 387 60.5
Potri.007G071300 Populus trichocarpa HOM05D005984 ORTHO05D007754 1.0e-113 414.5 429 55.0
Cc11_g02280 Coffea canephora HOM05D005984 ORTHO05D007754 1.3e-113 414.1 433 54.7
Haze_11755 Corylus avellana HOM05D005984 ORTHO05D007754 1.7e-113 413.7 449 55.0
Atru.chr11.1117 Acer truncatum HOM05D005984 ORTHO05D007754 2.2e-113 413.3 420 61.4
PGR044G2022 Punica granatum HOM05D005984 ORTHO05D007754 3.8e-113 412.5 448 53.6
THA.LOC104800911 Tarenaya hassleriana HOM05D005984 ORTHO05D007754 5.0e-113 412.1 387 61.0
Thhalv10004338m.g Eutrema salsugineum HOM05D005984 ORTHO05D007754 6.5e-113 411.8 432 55.8
Psat7g177360 Pisum sativum HOM05D005984 ORTHO05D007754 6.5e-113 411.8 430 56.7
Sp2g24000 Schrenkiella parvula HOM05D005984 ORTHO05D007754 6.5e-113 411.8 434 60.8
Zm00001eb271820 Zea mays HOM05D005984 ORTHO05D007754 6.5e-113 411.8 403 57.1
Ca_19021_v3 Cicer arietinum L. HOM05D005984 ORTHO05D007754 4.2e-112 409.1 457 54.9
C07p44410 Brassica napus HOM05D005984 ORTHO05D007754 5.5e-112 408.7 431 55.9
Manes.04G064200 Manihot esculenta HOM05D005984 ORTHO05D007754 7.2e-112 408.3 405 61.0
Os06g0729650 Oryza sativa ssp. japonica HOM05D005984 ORTHO05D007754 7.2e-112 408.3 398 57.3
A03p46390 Brassica napus HOM05D005984 ORTHO05D007754 9.3e-112 407.9 434 55.5
BraA03t13765Z Brassica rapa HOM05D005984 ORTHO05D007754 9.3e-112 407.9 434 55.5
Rhsim04G0167300 Rhododendron simsii HOM05D005984 ORTHO05D007754 9.3e-112 407.9 445 55.5
AT5G23120 Arabidopsis thaliana HOM05D005984 ORTHO05D007754 1.2e-111 407.5 435 56.1
BolC7t44963H Brassica oleracea HOM05D005984 ORTHO05D007754 1.6e-111 407.1 431 55.7
Lsat_1_v5_gn_3_35480 Lactuca sativa HOM05D005984 ORTHO05D007754 1.6e-111 407.1 433 58.4
ATR0618G114 Amborella trichopoda HOM05D005984 ORTHO05D007754 2.7e-111 406.4 420 56.2
HPP92_012878 Vanilla planifolia HOM05D005984 ORTHO05D007754 2.7e-111 406.4 384 59.4
AL6G34310 Arabidopsis lyrata HOM05D005984 ORTHO05D007754 4.6e-111 405.6 419 60.4
Carub.0006s2091 Capsella rubella HOM05D005984 ORTHO05D007754 7.9e-111 404.8 386 58.8
CARHR190410 Cardamine hirsuta HOM05D005984 ORTHO05D007754 7.9e-111 404.8 439 58.5
MSTRG.431 Avicennia marina HOM05D005984 ORTHO05D007754 1.0e-110 404.4 386 59.1
MELO3C023596.2 Cucumis melo HOM05D005984 ORTHO05D007754 1.8e-110 403.7 407 57.0
AUR62017696 Chenopodium quinoa HOM05D005984 ORTHO05D007754 3.0e-110 402.9 384 63.5
EL10Ac9g22946 Beta vulgaris HOM05D005984 ORTHO05D007754 3.3e-109 399.4 401 57.6
Nn3g18651 Nelumbo nucifera HOM05D005984 ORTHO05D007754 1.3e-108 397.5 414 57.0
Oeu026903.3 Olea europaea HOM05D005984 ORTHO05D007754 1.7e-108 397.1 464 56.2
Eucgr.J00865 Eucalyptus grandis HOM05D005984 ORTHO05D007754 1.4e-107 394.0 375 61.6
SGA_v2.0_scaffold88G27230 Striga asiatica HOM05D005984 ORTHO05D007754 1.8e-107 393.7 407 60.2
SalBow2G1456 Salvia bowleyana HOM05D005984 ORTHO05D007754 2.4e-107 393.3 449 56.6
unitig_8.g2892 Utricularia gibba HOM05D005984 ORTHO05D007754 2.4e-107 393.3 382 56.8
Nitab4.5_0000133g0050 Nicotiana tabacum HOM05D005984 ORTHO05D007754 1.5e-106 390.6 543 49.9
AUR62015232 Chenopodium quinoa HOM05D005984 ORTHO05D007754 1.0e-105 387.9 351 65.2
AUR62015234 Chenopodium quinoa HOM05D005984 ORTHO05D007754 1.0e-105 387.9 351 65.2
Migut.E00699 Erythranthe guttata HOM05D005984 ORTHO05D007754 8.5e-105 384.8 402 56.5
Hund08579 Selenicereus undatus HOM05D005984 ORTHO05D007754 1.4e-104 384.0 446 52.0
QL03p045967 Quercus lobata HOM05D005984 ORTHO05D007754 4.7e-103 379.0 519 46.2
HanXRQChr17g0544921 Helianthus annuus HOM05D005984 ORTHO05D007754 2.3e-102 376.7 404 58.9
Nitab4.5_0006277g0020 Nicotiana tabacum HOM05D005984 ORTHO05D007754 6.7e-102 375.2 574 46.5
Solyc02g014150.4 Solanum lycopersicum HOM05D005984 ORTHO05D007754 1.1e-101 374.4 408 54.2
Pp3c9_10350 Physcomitrium patens HOM05D005984 ORTHO05D007754 1.5e-101 374.0 398 59.0
Pp3c15_7930 Physcomitrium patens HOM05D005984 ORTHO05D007754 2.0e-101 373.6 387 58.9
HanXRQChr06g0171511 Helianthus annuus HOM05D005984 ORTHO05D007754 4.8e-100 369.0 366 61.2
SMO347G0352 Selaginella moellendorffii HOM05D005984 ORTHO05D007754 5.3e-99 365.5 382 51.8
Sc10g0006780 Simmondsia chinensis HOM05D005984 ORTHO05D007754 1.3e-97 360.9 368 56.5
Ah.01g001560 Amaranthus hybridus HOM05D005984 ORTHO05D007754 6.5e-97 358.6 420 51.9
Mapoly0020s0149 Marchantia polymorpha HOM05D005984 ORTHO05D007754 1.8e-94 350.5 387 50.4
Peaxi162Scf00363g00317 Petunia axillaris HOM05D005984 ORTHO05D007754 1.8e-94 350.5 494 49.2
CBR_g11122 Chara braunii HOM05D005984 ORTHO05D007754 6.1e-71 272.3 385 46.0
MCO05G498 Micromonas commoda HOM05D005984 ORTHO05D007754 8.9e-70 268.5 390 45.9
Cre06.g273700 Chlamydomonas reinhardtii HOM05D005984 ORTHO05D007754 3.4e-69 266.5 380 46.1
AagrBONN_evm.TU.Sc2ySwM_369.365 Anthoceros agrestis HOM05D005984 ORTHO05D007754 1.2e-66 258.1 361 46.5
Dinv01185 Davidia involucrata HOM05D005984 ORTHO05D007754 3.3e-64 250.0 128 90.6
Hma1.2p1_0122F.1_g057590 Hydrangea macrophylla HOM05D005984 ORTHO05D007754 3.4e-45 186.8 235 47.2
MD00G1043400 Malus domestica HOM05D005984 ORTHO05D007754 2.9e-44 183.7 111 81.1
AagrBONN_evm.TU.Sc2ySwM_368.563 Anthoceros agrestis HOM05D001974 ORTHO05D001995 4.1e-43 179.9 359 40.7
PRCOL_00000217 Prasinoderma coloniale HOM05D005984 ORTHO05D007754 4.4e-37 159.8 325 39.7
C09p07860 Brassica napus HOM05D005984 ORTHO05D007754 9.6e-32 142.1 148 54.7
HanXRQChr10g0318441 Helianthus annuus HOM05D005984 ORTHO05D007754 4.7e-31 139.8 67 92.5
arahy.Tifrunner.gnm1.ann1.25R2K9 Arachis hypogaea HOM05D005984 ORTHO05D014444 2.9e-28 130.6 94 67.0
arahy.Tifrunner.gnm1.ann1.B9R6EW Arachis hypogaea HOM05D005984 ORTHO05D014444 1.4e-27 128.3 92 67.4
SEGI_34707 Sequoiadendron giganteum HOM05D005984 ORTHO05D007754 3.9e-25 120.2 121 55.4
BcaB04g19886 Brassica carinata HOM05D005984 ORTHO05D007754 1.1e-22 112.1 202 40.6
SEGI_27749 Sequoiadendron giganteum HOM05D005984 ORTHO05D007754 6.4e-20 102.8 53 86.8
C09p07870 Brassica napus HOM05D005984 ORTHO05D042888 1.6e-15 88.2 97 50.5
MBI03_g15323_MAGBIO Magnolia biondii HOM05D002934 ORTHO05D003937 1.1e-14 85.5 42 90.5
Zm00001eb227280 Zea mays HOM05D005984 ORTHO05D007754 3.1e-14 84.0 62 67.7
MD15G1106700 Malus domestica HOM05D005984 ORTHO05D007754 4.9e-12 76.6 114 42.1
BolC9t53702H Brassica oleracea HOM05D005984 ORTHO05D042888 6.0e-10 69.7 61 59.0
Pp3c24_8290 Physcomitrium patens HOM05D013586 ORTHO05D011470 5.1e-09 66.6 38 73.7
SGA_v2.0_scaffold57G20111 Striga asiatica HOM05D005984 ORTHO05D402503 3.3e-08 63.9 44 65.9
AUR62043071 Chenopodium quinoa HOM05D003339 ORTHO05D003847 5.3e-06 56.6 61 50.8


User provided reference genes

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