Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN16G3367 Fragaria x ananassa HOM05D005396 ORTHO05D006400 7.9e-180 633.6 316 100.0
FvH4_3g30540 Fragaria vesca HOM05D005396 ORTHO05D006400 4.9e-174 614.4 316 96.8
FAN11G0079 Fragaria x ananassa HOM05D005396 ORTHO05D006400 1.1e-173 613.2 316 96.8
FAN25G1745 Fragaria x ananassa HOM05D005396 ORTHO05D006400 6.3e-169 597.4 305 97.0
RcHm_v2.0_Chr5g0056531 Rosa chinensis HOM05D005396 ORTHO05D006400 4.1e-160 568.2 312 91.7
Prupe.6G153500 Prunus persica HOM05D005396 ORTHO05D006400 1.0e-126 457.2 319 74.6
MD11G1180700 Malus domestica HOM05D005396 ORTHO05D006400 4.7e-124 448.4 315 72.7
Cfa013848 Carpinus fangiana HOM05D005396 ORTHO05D006400 3.2e-112 409.1 314 65.3
QL93p0267_0015 Quercus lobata HOM05D005396 ORTHO05D006400 3.2e-112 409.1 318 65.4
FAN21G3982 Fragaria x ananassa HOM05D005396 ORTHO05D006400 6.0e-111 404.8 211 95.7
TAR623G1186 Trochodendron aralioides HOM05D005396 ORTHO05D006400 3.0e-102 375.9 315 61.0
RhsimUnG0154800 Rhododendron simsii HOM05D005396 ORTHO05D006400 4.3e-101 372.1 316 60.8
Hma1.2p1_0143F.1_g064480 Hydrangea macrophylla HOM05D005396 ORTHO05D006400 7.3e-101 371.3 313 62.0
Nn4g25074 Nelumbo nucifera HOM05D005396 ORTHO05D006400 7.3e-101 371.3 315 60.6
Actinidia06861 Actinidia chinensis HOM05D005396 ORTHO05D006400 9.5e-101 370.9 315 59.7
Rhsim13G0228100 Rhododendron simsii HOM05D005396 ORTHO05D006400 3.6e-100 369.0 316 60.1
Thecc.09G337500 Theobroma cacao HOM05D005396 ORTHO05D006400 1.8e-99 366.7 323 60.1
Manes.04G053800 Manihot esculenta HOM05D005396 ORTHO05D006400 2.6e-98 362.8 319 58.9
Sc12g0000550 Simmondsia chinensis HOM05D005396 ORTHO05D006400 9.9e-98 360.9 315 60.3
Haze_22522 Corylus avellana HOM05D005396 ORTHO05D006400 2.2e-97 359.8 314 60.2
GSVIVG01037451001 Vitis vinifera HOM05D005396 ORTHO05D006400 2.9e-97 359.4 315 60.0
Hund20984 Selenicereus undatus HOM05D005396 ORTHO05D006400 8.3e-97 357.8 316 59.5
COL.COLO4_18366 Corchorus olitorius HOM05D005396 ORTHO05D006338 1.4e-96 357.1 315 59.0
Atru.chr3.1131 Acer truncatum HOM05D005396 ORTHO05D006400 1.9e-96 356.7 322 58.4
CANSAT54G2052 Cannabis sativa HOM05D005396 ORTHO05D006400 2.4e-96 356.3 271 66.4
Atru.chr3.1122 Acer truncatum HOM05D005396 ORTHO05D006400 3.2e-96 355.9 322 58.4
PGR119G0906 Punica granatum HOM05D005396 ORTHO05D006400 5.4e-96 355.1 306 58.2
Eucgr.J00626 Eucalyptus grandis HOM05D005396 ORTHO05D006400 7.1e-96 354.8 314 57.0
Aqoxy5G02307 Aquilegia oxysepala HOM05D005396 ORTHO05D006400 2.7e-95 352.8 320 59.7
TWI31G0083 Tripterygium wilfordii HOM05D005396 ORTHO05D006400 3.5e-95 352.4 323 58.2
Sopen01g002210 Solanum pennellii HOM05D005396 ORTHO05D006400 2.3e-94 349.7 313 60.1
CAN.G140.42 Capsicum annuum HOM05D005396 ORTHO05D006400 3.0e-94 349.4 313 59.1
PGSC0003DMG400032195 Solanum tuberosum HOM05D005396 ORTHO05D006400 3.0e-94 349.4 313 59.7
MELO3C014703.2 Cucumis melo HOM05D005396 ORTHO05D006400 1.1e-93 347.4 313 59.4
Lj6g0008952 Lotus japonicus HOM05D005396 ORTHO05D006400 1.1e-93 347.4 264 65.2
TWI79G1618 Tripterygium wilfordii HOM05D005396 ORTHO05D006400 1.9e-93 346.7 323 57.3
arahy.Tifrunner.gnm1.ann1.MJD0TM Arachis hypogaea HOM05D005396 ORTHO05D006400 4.3e-93 345.5 283 60.4
A10p18950 Brassica napus HOM05D005396 ORTHO05D006400 4.3e-93 345.5 319 60.2
BraA10t43972Z Brassica rapa HOM05D005396 ORTHO05D006400 4.3e-93 345.5 319 60.2
Carub.0006s1945 Capsella rubella HOM05D005396 ORTHO05D006400 4.3e-93 345.5 315 59.0
Oeu058539.1 Olea europaea HOM05D005396 ORTHO05D006400 5.6e-93 345.1 317 56.2
Glyma.20G050900 Glycine max HOM05D005396 ORTHO05D006400 9.6e-93 344.4 295 58.6
ClCG02G024200 Citrullus lanatus HOM05D005396 ORTHO05D006400 1.6e-92 343.6 313 58.5
HanXRQChr01g0021191 Helianthus annuus HOM05D005396 ORTHO05D006400 1.6e-92 343.6 311 56.6
Solyc01g006210.4 Solanum lycopersicum HOM05D005396 ORTHO05D006400 2.1e-92 343.2 312 59.3
vmacro04253 Vaccinium macrocarpon HOM05D005396 ORTHO05D006400 2.8e-92 342.8 371 50.1
VMungo0540G2152 Vigna mungo HOM05D005396 ORTHO05D006400 2.8e-92 342.8 304 57.9
MSTRG.17554 Avicennia marina HOM05D005396 ORTHO05D006400 3.6e-92 342.4 317 56.8
Cpa.g.sc103.64 Carica papaya HOM05D005396 ORTHO05D006400 3.6e-92 342.4 271 62.4
AUR62001615 Chenopodium quinoa HOM05D005396 ORTHO05D006400 1.4e-91 340.5 315 57.1
Ciclev10017900m.g Citrus clementina HOM05D005396 ORTHO05D006400 1.4e-91 340.5 316 56.3
Phvul.L001837 Phaseolus vulgaris HOM05D005396 ORTHO05D006400 1.4e-91 340.5 304 57.9
AL6G32750 Arabidopsis lyrata HOM05D005396 ORTHO05D006400 2.4e-91 339.7 318 58.5
Medtr3g078850 Medicago truncatula HOM05D005396 ORTHO05D006400 3.1e-91 339.3 293 58.7
Gohir.A03G035066 Gossypium hirsutum HOM05D005396 ORTHO05D006400 8.9e-91 337.8 323 55.1
TPR.G28402 Trifolium pratense HOM05D005396 ORTHO05D006400 1.2e-90 337.4 300 58.0
CDE02G2011 Ceratophyllum demersum HOM05D005396 ORTHO05D006400 1.5e-90 337.0 330 52.4
Gorai.003G140300 Gossypium raimondii HOM05D005396 ORTHO05D006400 1.5e-90 337.0 321 55.8
Peaxi162Scf00441g00618 Petunia axillaris HOM05D005396 ORTHO05D006400 2.0e-90 336.7 312 58.3
MBI13_g02393_MAGBIO Magnolia biondii HOM05D005396 ORTHO05D006400 2.6e-90 336.3 331 54.4
Gohir.D03G133200 Gossypium hirsutum HOM05D005396 ORTHO05D006400 3.4e-90 335.9 321 55.8
BcaC04g19522 Brassica carinata HOM05D005396 ORTHO05D006400 9.9e-90 334.3 319 58.6
ECA248G0004 Erigeron canadensis HOM05D005396 ORTHO05D006400 9.9e-90 334.3 310 57.4
Lalb_Chr19g0127081 Lupinus albus HOM05D005396 ORTHO05D006400 1.3e-89 334.0 287 57.8
Nitab4.5_0001568g0090 Nicotiana tabacum HOM05D005396 ORTHO05D006400 1.3e-89 334.0 292 59.6
BolC9t58356H Brassica oleracea HOM05D005396 ORTHO05D006400 1.7e-89 333.6 316 58.5
Sp6g23380 Schrenkiella parvula HOM05D005396 ORTHO05D006400 2.9e-89 332.8 260 66.2
Ca_16226_v3 Cicer arietinum L. HOM05D005396 ORTHO05D006400 4.9e-89 332.0 346 52.9
Ca_30133_v3 Cicer arietinum L. HOM05D005396 ORTHO05D006400 4.9e-89 332.0 346 52.9
Migut.N02270 Erythranthe guttata HOM05D005396 ORTHO05D006400 4.9e-89 332.0 312 58.0
Aa31LG1G13640 Aethionema arabicum HOM05D005396 ORTHO05D006400 8.4e-89 331.3 316 55.4
Thhalv10013965m.g Eutrema salsugineum HOM05D005396 ORTHO05D006400 1.9e-88 330.1 260 65.8
Zm00001eb405340 Zea mays HOM05D005396 ORTHO05D006400 4.2e-88 328.9 335 51.0
Ah.15g099430 Amaranthus hybridus HOM05D005396 ORTHO05D006400 5.4e-88 328.6 312 57.1
AT5G21140 Arabidopsis thaliana HOM05D005396 ORTHO05D006400 9.3e-88 327.8 315 57.5
C09p54930 Brassica napus HOM05D005396 ORTHO05D006400 9.3e-88 327.8 268 64.2
BNapus_Darmor_BZH_scaffold_38p01120 Brassica napus HOM05D005396 ORTHO05D006400 1.2e-87 327.4 322 58.1
BraA02t05619Z Brassica rapa HOM05D005396 ORTHO05D006400 1.2e-87 327.4 322 58.1
ATR0307G059 Amborella trichopoda HOM05D005396 ORTHO05D006400 2.7e-87 326.2 312 56.7
Cc01_g01860 Coffea canephora HOM05D005396 ORTHO05D006400 2.7e-87 326.2 316 56.0
BcaC03g13834 Brassica carinata HOM05D005396 ORTHO05D006400 3.5e-87 325.9 322 57.8
BolC2t07100H Brassica oleracea HOM05D005396 ORTHO05D006400 3.5e-87 325.9 322 57.8
Duzib170G1145 Durio zibethinus HOM05D005396 ORTHO05D006400 4.6e-87 325.5 321 54.8
SalBow2G1218 Salvia bowleyana HOM05D005396 ORTHO05D006400 7.8e-87 324.7 296 57.1
DCAR_024368 Daucus carota HOM05D005396 ORTHO05D006400 1.0e-86 324.3 263 60.8
SGA_v2.0_scaffold3G01566 Striga asiatica HOM05D005396 ORTHO05D006400 1.3e-86 323.9 315 52.7
THA.LOC104799054 Tarenaya hassleriana HOM05D005396 ORTHO05D006400 1.3e-86 323.9 318 53.5
BcaB08g36475 Brassica carinata HOM05D005396 ORTHO05D006400 1.7e-86 323.6 260 64.6
Potri.004G195600 Populus trichocarpa HOM05D005396 ORTHO05D006400 5.1e-86 322.0 314 55.1
BcaB05g22770 Brassica carinata HOM05D005396 ORTHO05D006400 2.5e-85 319.7 316 56.3
CARHR191730 Cardamine hirsuta HOM05D005396 ORTHO05D006400 2.5e-85 319.7 269 62.8
Sed0007754 Sechium edule HOM05D005396 ORTHO05D006400 7.3e-85 318.2 261 61.7
Lsat_1_v5_gn_1_68341 Lactuca sativa HOM05D005396 ORTHO05D006400 1.1e-83 314.3 309 54.7
EL10Ac7g16216 Beta vulgaris HOM05D005396 ORTHO05D006400 1.4e-83 313.9 361 50.7
Dinv09746 Davidia involucrata HOM05D005396 ORTHO05D006400 1.4e-83 313.9 237 65.4
CsaV3_4G017330 Cucumis sativus L. HOM05D005396 ORTHO05D006400 3.1e-83 312.8 285 57.2
PSO384G1109 Papaver somniferum HOM05D005396 ORTHO05D006400 3.1e-83 312.8 315 53.0
Os11g0130300 Oryza sativa ssp. japonica HOM05D005396 ORTHO05D006400 2.9e-81 306.2 313 51.1
arahy.Tifrunner.gnm1.ann1.MU94NL Arachis hypogaea HOM05D005396 ORTHO05D006400 5.4e-80 302.0 248 59.3
Os12g0127100 Oryza sativa ssp. japonica HOM05D005396 ORTHO05D006400 9.3e-80 301.2 313 51.1
Sabra04G0132800 Salix brachista HOM05D005396 ORTHO05D006400 1.2e-79 300.8 371 46.6
Dinv36333 Davidia involucrata HOM05D005396 ORTHO05D006400 5.1e-78 295.4 207 70.5
Nitab4.5_0005132g0020 Nicotiana tabacum HOM05D005396 ORTHO05D006400 7.3e-77 291.6 238 63.4
HPP92_018982 Vanilla planifolia HOM05D005396 ORTHO05D006400 6.2e-76 288.5 316 49.4
PSO339G5547 Papaver somniferum HOM05D005396 ORTHO05D006400 3.8e-73 279.3 235 58.7
EL10Ac7g16212 Beta vulgaris HOM05D005396 ORTHO05D006400 1.9e-72 276.9 322 51.2
EL10Ac1g01677 Beta vulgaris HOM05D005396 ORTHO05D006400 4.2e-72 275.8 321 50.8
Lj2A553G20 Lonicera japonica HOM05D005396 ORTHO05D006400 1.2e-71 274.2 205 66.8
Psat0s646g0040 Pisum sativum HOM05D005396 ORTHO05D006400 6.0e-71 271.9 328 50.0
RcHm_v2.0_Chr5g0056151 Rosa chinensis HOM05D005396 ORTHO05D006400 1.1e-69 267.7 158 84.2
CiPaw.07G159800 Carya illinoinensis HOM05D005396 ORTHO05D006400 3.8e-65 252.7 213 60.1
Pp3c20_10070 Physcomitrium patens HOM05D005396 ORTHO05D006400 3.4e-58 229.6 265 46.8
BolC2t07101H Brassica oleracea HOM05D005396 ORTHO05D006400 1.1e-56 224.6 272 49.6
BcaC03g13835 Brassica carinata HOM05D005396 ORTHO05D006400 7.1e-56 221.9 272 49.3
BraA02t05620Z Brassica rapa HOM05D005396 ORTHO05D006400 2.1e-55 220.3 273 49.5
AUR62020162 Chenopodium quinoa HOM05D005396 ORTHO05D006400 2.1e-55 220.3 260 48.5
SEGI_19301 Sequoiadendron giganteum HOM05D005396 ORTHO05D006400 5.1e-54 215.7 218 50.0
SMO239G0090 Selaginella moellendorffii HOM05D005396 ORTHO05D006400 9.7e-53 211.5 230 47.0
BNapus_Darmor_BZH_scaffold_38p01110 Brassica napus HOM05D005396 ORTHO05D006400 1.6e-52 210.7 273 48.0
SHI25366 Sapria himalayana HOM05D005396 ORTHO05D000023 6.9e-51 205.3 366 36.9
RcHm_v2.0_Chr6g0256561 Rosa chinensis HOM05D005396 ORTHO05D006400 2.5e-48 196.8 113 85.0
EL10Ac7g16203 Beta vulgaris HOM05D005396 ORTHO05D006400 1.0e-46 191.4 206 53.4
unitig_60.g25792 Utricularia gibba HOM05D005396 ORTHO05D006400 3.3e-45 186.4 315 36.8
vmacro22428 Vaccinium macrocarpon HOM05D005396 ORTHO05D006400 7.4e-45 185.3 214 48.6
CSS0010626 Camellia sinensis var. sinensis HOM05D005396 ORTHO05D006400 6.9e-43 178.7 187 50.8
EL10Ac7g16205 Beta vulgaris HOM05D005396 ORTHO05D006400 4.7e-39 166.0 398 34.7
CBR_g4478 Chara braunii HOM05D005396 ORTHO05D000048 6.1e-39 165.6 240 35.0
AagrBONN_evm.TU.Sc2ySwM_368.35 Anthoceros agrestis HOM05D005396 ORTHO05D006400 1.5e-37 161.0 198 42.9
EL10Ac7g16214 Beta vulgaris HOM05D005396 ORTHO05D006400 2.0e-37 160.6 248 45.2
EL10Ac7g16209 Beta vulgaris HOM05D005396 ORTHO05D006400 7.0e-35 152.1 189 48.7
Psat5g030400 Pisum sativum HOM05D001137 ORTHO05D006400 6.5e-33 145.6 122 56.6
DCAR_024367 Daucus carota HOM05D005396 ORTHO05D006400 1.9e-32 144.1 316 33.5
Zm00001eb199750 Zea mays HOM05D005396 ORTHO05D006400 3.2e-32 143.3 204 43.1
CSS0025534 Camellia sinensis var. sinensis HOM05D005396 ORTHO05D006400 6.3e-28 129.0 111 61.3
Mapoly0185s0017 Marchantia polymorpha HOM05D005396 ORTHO05D006400 2.2e-25 120.6 264 33.3
MCO07G491 Micromonas commoda HOM05D005396 ORTHO05D006400 1.0e-17 95.1 197 30.5
Actinidia16276 Actinidia chinensis HOM05D005396 ORTHO05D006400 2.9e-17 93.6 106 50.0
HanXRQChr08g0223711 Helianthus annuus HOM05D005396 ORTHO05D006400 7.0e-11 72.4 43 67.4
Cre03.g181650 Chlamydomonas reinhardtii HOM05D005396 ORTHO05D006400 1.2e-07 61.6 151 23.8


User provided reference genes

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