Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN16G2984 Fragaria x ananassa HOM05D002034 ORTHO05D006399 4.5e-128 462.2 457 100.0
FvH4_3g39510 Fragaria vesca HOM05D002034 ORTHO05D006399 1.5e-123 447.2 457 97.8
FAN11G3559 Fragaria x ananassa HOM05D002034 ORTHO05D006399 2.3e-119 433.3 457 95.8
FAN21G0003 Fragaria x ananassa HOM05D002034 ORTHO05D006399 3.6e-117 426.0 457 88.0
FAN25G3394 Fragaria x ananassa HOM05D000417 ORTHO05D000342 1.0e-111 407.9 457 94.1
RcHm_v2.0_Chr5g0071281 Rosa chinensis HOM05D002034 ORTHO05D006399 3.2e-97 359.8 365 83.6
Prupe.6G050700 Prunus persica HOM05D002034 ORTHO05D006399 4.2e-81 306.2 374 71.4
Potri.001G281300 Populus trichocarpa HOM05D002034 ORTHO05D006399 1.1e-76 291.6 377 63.1
MD03G1060300 Malus domestica HOM05D002034 ORTHO05D006399 3.8e-74 283.1 475 74.5
MD11G1063400 Malus domestica HOM05D002034 ORTHO05D006399 8.4e-74 282.0 375 76.0
EL10Ac7g15904 Beta vulgaris HOM05D002034 ORTHO05D006399 4.2e-73 279.6 373 56.8
Lj6g0014994 Lotus japonicus HOM05D002034 ORTHO05D006399 9.3e-73 278.5 363 67.2
Actinidia34475 Actinidia chinensis HOM05D002034 ORTHO05D006399 2.1e-72 277.3 374 54.8
Potri.009G076600 Populus trichocarpa HOM05D002034 ORTHO05D006399 3.5e-72 276.6 380 59.5
Glyma.11G165000 Glycine max HOM05D002034 ORTHO05D006399 1.8e-71 274.2 376 73.9
Phvul.006G072900 Phaseolus vulgaris HOM05D002034 ORTHO05D006399 5.1e-71 272.7 388 69.3
Phvul.008G257600 Phaseolus vulgaris HOM05D002034 ORTHO05D006399 6.7e-71 272.3 375 56.5
Nitab4.5_0004174g0030 Nicotiana tabacum HOM05D002034 ORTHO05D006399 3.3e-70 270.0 371 58.0
Sabra16G0175000 Salix brachista HOM05D002034 ORTHO05D006399 7.4e-70 268.9 388 62.6
Thecc.09G355700 Theobroma cacao HOM05D002034 ORTHO05D006399 7.4e-70 268.9 373 63.0
Duzib170G0382 Durio zibethinus HOM05D002034 ORTHO05D006399 1.3e-69 268.1 373 59.2
Nitab4.5_0004155g0010 Nicotiana tabacum HOM05D002034 ORTHO05D006399 1.6e-69 267.7 369 56.6
Glyma.18G058200 Glycine max HOM05D002034 ORTHO05D006399 2.1e-69 267.3 378 73.0
CiPaw.14G055200 Carya illinoinensis HOM05D002034 ORTHO05D006399 4.8e-69 266.2 373 69.4
BraA02t05843Z Brassica rapa HOM05D002034 ORTHO05D006399 3.1e-68 263.5 370 53.2
PGSC0003DMG400030374 Solanum tuberosum HOM05D002034 ORTHO05D006399 4.0e-68 263.1 369 61.0
Glyma.14G197700 Glycine max HOM05D002034 ORTHO05D006399 6.9e-68 262.3 372 58.9
Lalb_Chr17g0345341 Lupinus albus HOM05D002034 ORTHO05D006399 9.0e-68 261.9 375 63.5
Lalb_Chr04g0252031 Lupinus albus HOM05D002034 ORTHO05D006399 2.0e-67 260.8 373 73.5
Psat5g153880 Pisum sativum HOM05D002034 ORTHO05D006399 2.6e-67 260.4 367 58.6
Nitab4.5_0006148g0010 Nicotiana tabacum HOM05D002034 ORTHO05D006399 4.5e-67 259.6 371 55.0
C03p14310 Brassica napus HOM05D002034 ORTHO05D006399 5.8e-67 259.2 371 48.0
Medtr3g031740 Medicago truncatula HOM05D002034 ORTHO05D006399 1.3e-66 258.1 367 61.3
vmacro14615 Vaccinium macrocarpon HOM05D002034 ORTHO05D006399 1.3e-66 258.1 395 56.5
Duzib168G0356 Durio zibethinus HOM05D002034 ORTHO05D006399 2.2e-66 257.3 374 69.5
Nitab4.5_0000967g0020 Nicotiana tabacum HOM05D002034 ORTHO05D006399 3.2e-65 253.4 369 54.5
VMungo0647G1676 Vigna mungo HOM05D002034 ORTHO05D006399 5.5e-65 252.7 376 60.4
Hund18957 Selenicereus undatus HOM05D002034 ORTHO05D006399 7.1e-65 252.3 372 50.8
BraA03t10531Z Brassica rapa HOM05D002034 ORTHO05D004251 3.5e-64 250.0 470 45.5
CAN.G741.43 Capsicum annuum HOM05D002034 ORTHO05D006399 4.6e-64 249.6 372 45.2
Dinv28685 Davidia involucrata HOM05D002034 ORTHO05D006399 4.6e-64 249.6 375 63.2
A02p07680 Brassica napus HOM05D002034 ORTHO05D006399 1.0e-63 248.4 364 59.6
Manes.18G141005 Manihot esculenta HOM05D002034 ORTHO05D006399 1.0e-63 248.4 387 55.0
Actinidia23869 Actinidia chinensis HOM05D002034 ORTHO05D006399 3.9e-63 246.5 366 49.5
Cfa011758 Carpinus fangiana HOM05D002034 ORTHO05D006399 6.7e-63 245.7 372 68.5
Ca_05091_v3 Cicer arietinum L. HOM05D002034 ORTHO05D006399 6.7e-63 245.7 380 68.2
Ca_14994_v3 Cicer arietinum L. HOM05D002034 ORTHO05D006399 6.7e-63 245.7 380 68.2
Lsat_1_v5_gn_5_174460 Lactuca sativa HOM05D000417 ORTHO05D000342 6.7e-63 245.7 372 68.8
MELO3C020506.2 Cucumis melo HOM05D002034 ORTHO05D006399 1.5e-62 244.6 388 53.4
Gohir.A03G026200 Gossypium hirsutum HOM05D002034 ORTHO05D006399 1.5e-62 244.6 367 61.0
ClCG03G000290 Citrullus lanatus HOM05D002034 ORTHO05D006399 1.9e-62 244.2 391 54.0
Lalb_Chr10g0103541 Lupinus albus HOM05D002034 ORTHO05D006399 2.5e-62 243.8 371 68.2
unitig_26.g10217 Utricularia gibba HOM05D002034 ORTHO05D006399 2.5e-62 243.8 373 52.3
BcaC03g14089 Brassica carinata HOM05D002034 ORTHO05D006399 4.3e-62 243.0 370 50.5
C02p13300 Brassica napus HOM05D002034 ORTHO05D006399 4.3e-62 243.0 373 50.4
BolC2t07445H Brassica oleracea HOM05D002034 ORTHO05D006399 5.7e-62 242.7 373 50.4
Sabra09G0058400 Salix brachista HOM05D002034 ORTHO05D006399 7.4e-62 242.3 335 65.7
Dinv09661 Davidia involucrata HOM05D002034 ORTHO05D006399 9.7e-62 241.9 374 57.5
Sopen06g033600 Solanum pennellii HOM05D002034 ORTHO05D006399 1.6e-61 241.1 371 56.9
Glyma.02G230600 Glycine max HOM05D002034 ORTHO05D006399 2.8e-61 240.4 376 56.4
C09p50360 Brassica napus HOM05D002034 ORTHO05D006399 3.7e-61 240.0 371 48.2
CsaV3_1G036630 Cucumis sativus L. HOM05D002034 ORTHO05D006399 3.7e-61 240.0 388 55.9
Aa31LG11G250 Aethionema arabicum HOM05D002034 ORTHO05D006399 4.8e-61 239.6 384 51.8
ECA248G0185 Erigeron canadensis HOM05D002034 ORTHO05D006399 6.3e-61 239.2 385 63.4
Hma1.2p1_0146F.1_g065460 Hydrangea macrophylla HOM05D002034 ORTHO05D006399 8.2e-61 238.8 374 61.2
CARHR272300 Cardamine hirsuta HOM05D002034 ORTHO05D006399 2.4e-60 237.3 468 51.9
Sp6g20160 Schrenkiella parvula HOM05D002034 ORTHO05D006399 5.3e-60 236.1 362 54.7
Nn2g13237 Nelumbo nucifera HOM05D002034 ORTHO05D006399 6.9e-60 235.7 373 56.3
Peaxi162Scf00390g00821 Petunia axillaris HOM05D002034 ORTHO05D006399 1.2e-59 235.0 371 59.6
BcaB05g22434 Brassica carinata HOM05D002034 ORTHO05D006399 3.4e-59 233.4 468 56.6
AL8G34690 Arabidopsis lyrata HOM05D002034 ORTHO05D006399 4.5e-59 233.0 482 47.1
Lj2A1091G43 Lonicera japonica HOM05D002034 ORTHO05D006399 5.9e-59 232.6 367 52.9
Carub.0008s1906 Capsella rubella HOM05D002034 ORTHO05D006399 7.6e-59 232.3 367 44.4
QL01p039969 Quercus lobata HOM05D002034 ORTHO05D006399 1.3e-58 231.5 372 58.1
TWI79G0783 Tripterygium wilfordii HOM05D002034 ORTHO05D006399 1.3e-58 231.5 369 54.5
Gohir.D05G108500 Gossypium hirsutum HOM05D002034 ORTHO05D006399 2.2e-58 230.7 371 60.4
Sed0020719 Sechium edule HOM05D002034 ORTHO05D006399 2.2e-58 230.7 386 54.1
Gorai.009G112700 Gossypium raimondii HOM05D002034 ORTHO05D006399 3.8e-58 229.9 369 60.2
GSVIVG01030073001 Vitis vinifera HOM05D000417 ORTHO05D000342 6.5e-58 229.2 383 41.5
Sed0021639 Sechium edule HOM05D002034 ORTHO05D006399 8.5e-58 228.8 400 54.0
BraA10t43645Z Brassica rapa HOM05D002034 ORTHO05D006399 5.5e-57 226.1 366 51.1
Cc01_g14710 Coffea canephora HOM05D000417 ORTHO05D000342 9.4e-57 225.3 373 57.9
Os01g0164400 Oryza sativa ssp. japonica HOM05D002034 ORTHO05D006399 1.6e-56 224.6 142 82.4
BolC9t57892H Brassica oleracea HOM05D002034 ORTHO05D006399 2.1e-56 224.2 365 51.8
VMungo0540G2394 Vigna mungo HOM05D002034 ORTHO05D006399 2.1e-56 224.2 384 64.6
Migut.N00767 Erythranthe guttata HOM05D002034 ORTHO05D006399 3.6e-56 223.4 376 52.9
arahy.Tifrunner.gnm1.ann1.99AA0S Arachis hypogaea HOM05D002034 ORTHO05D006399 7.9e-56 222.2 363 65.0
Aqoxy1G01307 Aquilegia oxysepala HOM05D002034 ORTHO05D006399 1.0e-55 221.9 374 58.0
Zm00001eb123460 Zea mays HOM05D002034 ORTHO05D006399 1.0e-55 221.9 399 60.7
Ah.08g215230 Amaranthus hybridus HOM05D002034 ORTHO05D006399 1.4e-55 221.5 340 61.2
Gohir.A03G026400 Gossypium hirsutum HOM05D002034 ORTHO05D006399 1.8e-55 221.1 365 56.7
Hma1.2p1_0841F.1_g226910 Hydrangea macrophylla HOM05D002034 ORTHO05D006399 2.3e-55 220.7 324 53.1
Thhalv10012621m.g Eutrema salsugineum HOM05D000417 ORTHO05D000342 3.9e-55 219.9 371 47.2
A10p15750 Brassica napus HOM05D002034 ORTHO05D004251 5.1e-55 219.5 367 45.8
Manes.02G216300 Manihot esculenta HOM05D002034 ORTHO05D006399 1.9e-54 217.6 468 55.3
AT5G58470 Arabidopsis thaliana HOM05D002034 ORTHO05D006399 3.3e-54 216.9 370 45.7
Oeu053356.2 Olea europaea HOM05D002034 ORTHO05D006399 3.3e-54 216.9 377 55.4
DCAR_007354 Daucus carota HOM05D002034 ORTHO05D006399 5.7e-54 216.1 380 50.5
Atru.chr3.4131 Acer truncatum HOM05D002034 ORTHO05D006399 7.4e-54 215.7 373 59.0
A03p12200 Brassica napus HOM05D002034 ORTHO05D004251 1.3e-53 214.9 464 46.1
BcaB08g36182 Brassica carinata HOM05D002034 ORTHO05D006399 1.8e-52 211.1 351 49.6
SGA_v2.0_scaffold104G30143 Striga asiatica HOM05D002034 ORTHO05D006399 2.4e-52 210.7 416 59.6
AUR62009684 Chenopodium quinoa HOM05D002034 ORTHO05D006399 1.0e-50 205.3 255 52.5
Solyc06g082220.4 Solanum lycopersicum HOM05D002034 ORTHO05D006399 1.7e-50 204.5 261 59.0
arahy.Tifrunner.gnm1.ann1.60GRLQ Arachis hypogaea HOM05D002034 ORTHO05D006399 2.9e-50 203.8 369 54.7
CSS0042328 Camellia sinensis var. sinensis HOM05D002034 ORTHO05D006399 6.5e-50 202.6 353 56.7
Lj1C128G5 Lonicera japonica HOM05D002034 ORTHO05D006399 2.5e-49 200.7 354 50.8
MBI05_g02399_MAGBIO Magnolia biondii HOM05D002034 ORTHO05D006399 4.2e-49 199.9 329 52.0
CDE06G0527 Ceratophyllum demersum HOM05D002034 ORTHO05D006399 5.5e-49 199.5 356 52.2
Gohir.D03G142300 Gossypium hirsutum HOM05D002034 ORTHO05D006399 5.5e-49 199.5 367 55.9
Gorai.003G149400 Gossypium raimondii HOM05D002034 ORTHO05D006399 5.5e-49 199.5 367 55.9
arahy.Tifrunner.gnm1.ann1.S7G6UF Arachis hypogaea HOM05D002034 ORTHO05D006399 2.1e-48 197.6 398 50.8
Haze_24395 Corylus avellana HOM05D002034 ORTHO05D006399 3.6e-48 196.8 140 75.0
CDE04G0201 Ceratophyllum demersum HOM05D002034 ORTHO05D006399 4.7e-48 196.4 264 51.9
Oeu064670.1 Olea europaea HOM05D002034 ORTHO05D006399 1.0e-47 195.3 373 50.1
Zm00001eb336220 Zea mays HOM05D002034 ORTHO05D006399 1.0e-47 195.3 412 56.1
Cpa.g.sc2.376 Carica papaya HOM05D002034 ORTHO05D006399 2.3e-47 194.1 231 65.4
HPP92_003242 Vanilla planifolia HOM05D002034 ORTHO05D006399 2.3e-47 194.1 403 46.2
CSS0028239 Camellia sinensis var. sinensis HOM05D002034 ORTHO05D006399 5.1e-47 193.0 353 57.2
SHI19198 Sapria himalayana HOM05D002034 ORTHO05D006399 8.8e-47 192.2 366 43.4
TAR623G0025 Trochodendron aralioides HOM05D002034 ORTHO05D006399 8.8e-47 192.2 368 60.1
Gohir.A05G108332 Gossypium hirsutum HOM05D002034 ORTHO05D006399 2.4e-44 184.1 339 48.4
AUR62001888 Chenopodium quinoa HOM05D002034 ORTHO05D006399 4.1e-44 183.3 207 53.6
TAR633G1742 Trochodendron aralioides HOM05D002034 ORTHO05D006399 3.4e-43 180.3 386 44.3
Hma1.2p1_2630F.1_g325730 Hydrangea macrophylla HOM05D002034 ORTHO05D006399 5.9e-43 179.5 268 59.7
ATR0174G006 Amborella trichopoda HOM05D002034 ORTHO05D006399 1.0e-42 178.7 387 46.3
HPP92_025110 Vanilla planifolia HOM05D002034 ORTHO05D006399 1.7e-42 177.9 368 37.8
CSS0049450 Camellia sinensis var. sinensis HOM05D002034 ORTHO05D006399 8.5e-42 175.6 355 44.8
SEGI_19079 Sequoiadendron giganteum HOM05D002034 ORTHO05D006399 2.1e-40 171.0 347 51.0
AagrBONN_evm.TU.Sc2ySwM_344.1306 Anthoceros agrestis HOM05D002034 ORTHO05D006399 8.0e-40 169.1 139 65.5
Gorai.003G149100 Gossypium raimondii HOM05D002034 ORTHO05D006399 2.3e-39 167.5 368 50.5
Gohir.D03G142100 Gossypium hirsutum HOM05D002034 ORTHO05D006399 3.0e-39 167.2 377 48.3
COL.COLO4_11127 Corchorus olitorius HOM05D002034 ORTHO05D006399 2.4e-36 157.5 187 52.9
SMO358G0702 Selaginella moellendorffii HOM05D002034 ORTHO05D006399 3.1e-36 157.1 106 68.9
Mapoly0074s0009 Marchantia polymorpha HOM05D002034 ORTHO05D006399 2.6e-35 154.1 141 61.7
Pp3c17_1620 Physcomitrium patens HOM05D002034 ORTHO05D006399 7.7e-35 152.5 136 61.0
Pp3c12_3430 Physcomitrium patens HOM05D002034 ORTHO05D006399 6.5e-34 149.4 136 60.3
Actinidia23208 Actinidia chinensis HOM05D002034 ORTHO05D006399 2.8e-29 134.0 101 71.3
CBR_g17146 Chara braunii HOM05D002034 ORTHO05D006399 1.1e-28 132.1 316 36.7
BolC9t57305H Brassica oleracea HOM05D002034 ORTHO05D006399 3.1e-28 130.6 287 44.6
BolC3t13875H Brassica oleracea HOM05D002034 ORTHO05D006399 2.5e-25 120.9 262 36.3
BcaC01g04152 Brassica carinata HOM05D002034 ORTHO05D006399 1.4e-23 115.2 79 70.9
Sc21g0005190 Simmondsia chinensis HOM05D002034 ORTHO05D006399 6.8e-23 112.8 264 47.3
C02p38030 Brassica napus HOM05D002034 ORTHO05D006399 7.5e-22 109.4 83 67.5
Ciclev10027796m.g Citrus clementina HOM05D000417 ORTHO05D000342 1.3e-21 108.6 262 46.2
A09p54750 Brassica napus HOM05D002034 ORTHO05D006399 2.8e-21 107.5 83 65.1
BolC9t53947H Brassica oleracea HOM05D002034 ORTHO05D006399 8.3e-21 105.9 75 72.0
C02p11700 Brassica napus HOM05D002034 ORTHO05D006399 1.3e-18 98.6 50 84.0
MCO15G578 Micromonas commoda HOM05D002034 ORTHO05D000124 4.2e-17 93.6 112 42.9
C04p55240 Brassica napus HOM05D002034 ORTHO05D006399 1.9e-09 68.2 67 58.2
Nn1g04222 Nelumbo nucifera HOM05D002034 ORTHO05D006399 5.6e-09 66.6 35 74.3
C09p44360 Brassica napus HOM05D002034 ORTHO05D006399 7.3e-09 66.2 245 39.2
vmacro16010 Vaccinium macrocarpon HOM05D005264 ORTHO05D005428 9.5e-09 65.9 92 42.4
Lsat_1_v5_gn_3_32780 Lactuca sativa HOM05D005264 ORTHO05D005428 8.0e-08 62.8 92 40.2
Os09g0299500 Oryza sativa ssp. japonica HOM05D005264 ORTHO05D005428 1.0e-07 62.4 127 36.2
SalBow1G6014 Salvia bowleyana HOM05D005264 ORTHO05D005428 1.4e-07 62.0 92 39.1
MCO15G549 Micromonas commoda HOM05D005264 ORTHO05D005428 2.3e-07 61.2 34 67.6
Cfa008720 Carpinus fangiana HOM05D005264 ORTHO05D001742 5.2e-07 60.1 126 38.9
CBR_g224 Chara braunii HOM05D005264 ORTHO05D005428 8.9e-07 59.3 33 66.7
DCAR_002562 Daucus carota HOM05D005264 ORTHO05D005428 1.5e-06 58.5 92 37.0
Mapoly0154s0004 Marchantia polymorpha HOM05D005264 ORTHO05D005428 1.5e-06 58.5 33 66.7
AUR62017649 Chenopodium quinoa HOM05D005264 ORTHO05D005428 4.4e-06 57.0 92 35.9
Potri.010G170700 Populus trichocarpa HOM05D005264 ORTHO05D005428 5.8e-06 56.6 92 38.0
SMO134G0144 Selaginella moellendorffii HOM05D005264 ORTHO05D005428 5.8e-06 56.6 32 62.5
CBR_g44542 Chara braunii HOM05D005514 ORTHO05D006563 7.5e-06 56.2 31 67.7
ClCG10G015380 Citrullus lanatus HOM05D005264 ORTHO05D005428 7.5e-06 56.2 92 40.2
AagrBONN_evm.TU.Sc2ySwM_344.985 Anthoceros agrestis HOM05D005264 ORTHO05D005428 9.8e-06 55.8 33 60.6


User provided reference genes

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