Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN16G1654 Fragaria x ananassa HOM05D004270 ORTHO05D005037 1.1e-167 593.2 297 100.0
FAN11G3302 Fragaria x ananassa HOM05D004270 ORTHO05D005037 6.3e-163 577.4 297 98.3
FvH4_3g14500 Fragaria vesca HOM05D004270 ORTHO05D005037 2.7e-153 545.4 272 99.6
FAN25G1815 Fragaria x ananassa HOM05D004270 ORTHO05D005037 1.7e-152 542.7 272 99.3
RcHm_v2.0_Chr5g0023881 Rosa chinensis HOM05D004270 ORTHO05D005037 5.0e-152 541.2 272 98.5
Prupe.4G129800 Prunus persica HOM05D004270 ORTHO05D005037 1.4e-146 523.1 272 93.4
MD10G1213400 Malus domestica HOM05D004270 ORTHO05D005037 5.4e-146 521.2 272 93.8
CiPaw.14G018200 Carya illinoinensis HOM05D004270 ORTHO05D005037 6.5e-144 514.2 272 91.9
FAN21G0266 Fragaria x ananassa HOM05D004270 ORTHO05D005037 1.5e-143 513.1 263 97.7
QL04p092971 Quercus lobata HOM05D004270 ORTHO05D005037 1.6e-142 509.6 288 87.5
COL.COLO4_12345 Corchorus olitorius HOM05D004270 ORTHO05D005037 3.6e-142 508.4 272 91.2
Sp5g34553 Schrenkiella parvula HOM05D004270 ORTHO05D005037 4.7e-142 508.1 272 91.5
arahy.Tifrunner.gnm1.ann1.D5XWDC Arachis hypogaea HOM05D004270 ORTHO05D005037 6.1e-142 507.7 272 90.1
Haze_02880 Corylus avellana HOM05D004270 ORTHO05D005037 8.0e-142 507.3 276 89.1
Thecc.06G006500 Theobroma cacao HOM05D004270 ORTHO05D005037 1.0e-141 506.9 272 89.7
QL04p091607 Quercus lobata HOM05D004270 ORTHO05D005037 1.4e-141 506.5 288 87.2
Potri.005G199100 Populus trichocarpa HOM05D004270 ORTHO05D005037 1.8e-141 506.1 272 90.4
arahy.Tifrunner.gnm1.ann1.PIH8R2 Arachis hypogaea HOM05D004270 ORTHO05D005037 2.3e-141 505.8 272 89.7
BcaC08g45353 Brassica carinata HOM05D004270 ORTHO05D005037 2.3e-141 505.8 275 90.2
AT1G79500 Arabidopsis thaliana HOM05D004270 ORTHO05D005037 4.0e-141 505.0 272 90.8
Ciclev10005458m.g Citrus clementina HOM05D004270 ORTHO05D005037 5.2e-141 504.6 272 89.7
Potri.002G061900 Populus trichocarpa HOM05D004270 ORTHO05D005037 5.2e-141 504.6 272 89.7
Thhalv10018956m.g Eutrema salsugineum HOM05D004270 ORTHO05D005037 6.8e-141 504.2 272 90.8
TPR.G21772 Trifolium pratense HOM05D004270 ORTHO05D005037 6.8e-141 504.2 269 90.3
BcaC03g15900 Brassica carinata HOM05D004270 ORTHO05D005037 1.5e-140 503.1 272 90.4
CARHR073160 Cardamine hirsuta HOM05D004270 ORTHO05D005037 2.0e-140 502.7 272 91.2
BcaB02g07218 Brassica carinata HOM05D004270 ORTHO05D005037 2.6e-140 502.3 272 90.4
Lj1g0019682 Lotus japonicus HOM05D004270 ORTHO05D005037 2.6e-140 502.3 272 89.3
Nn6g34391 Nelumbo nucifera HOM05D004270 ORTHO05D005037 2.6e-140 502.3 272 90.1
Duzib268G0296 Durio zibethinus HOM05D004270 ORTHO05D005037 3.4e-140 501.9 272 89.0
Thhalv10008359m.g Eutrema salsugineum HOM05D004270 ORTHO05D005037 4.4e-140 501.5 271 90.4
Lalb_Chr19g0126381 Lupinus albus HOM05D004270 ORTHO05D005037 4.4e-140 501.5 269 90.3
AL2G40110 Arabidopsis lyrata HOM05D004270 ORTHO05D005037 5.7e-140 501.1 272 90.1
Ca_08047_v3 Cicer arietinum L. HOM05D004270 ORTHO05D005037 7.5e-140 500.7 272 89.3
Ca_08053_v3 Cicer arietinum L. HOM05D004270 ORTHO05D005037 7.5e-140 500.7 272 89.3
TPR.G29107 Trifolium pratense HOM05D004270 ORTHO05D005037 1.3e-139 500.0 269 90.3
Carub.0002s2636 Capsella rubella HOM05D004270 ORTHO05D005037 1.7e-139 499.6 272 90.1
Psat3g099560 Pisum sativum HOM05D004270 ORTHO05D005037 1.7e-139 499.6 272 88.2
THA.LOC104812380 Tarenaya hassleriana HOM05D004270 ORTHO05D005037 2.2e-139 499.2 285 85.6
ClCG03G001640 Citrullus lanatus HOM05D004270 ORTHO05D005037 2.8e-139 498.8 272 89.3
CSS0035574 Camellia sinensis var. sinensis HOM05D004270 ORTHO05D005037 8.3e-139 497.3 272 88.2
Duzib187G1348 Durio zibethinus HOM05D004270 ORTHO05D005037 8.3e-139 497.3 272 89.3
MD05G1236400 Malus domestica HOM05D004270 ORTHO05D005037 8.3e-139 497.3 272 90.4
CsaV3_1G034040 Cucumis sativus L. HOM05D004270 ORTHO05D005037 1.1e-138 496.9 272 89.0
Glyma.09G244900 Glycine max HOM05D004270 ORTHO05D005037 1.4e-138 496.5 270 88.9
Sed0021681 Sechium edule HOM05D004270 ORTHO05D005037 1.4e-138 496.5 286 85.7
Atru.chr1.67 Acer truncatum HOM05D004270 ORTHO05D005037 2.4e-138 495.7 272 88.2
MELO3C020651.2 Cucumis melo HOM05D004270 ORTHO05D005037 2.4e-138 495.7 272 89.0
Medtr7g081220 Medicago truncatula HOM05D004270 ORTHO05D005037 2.4e-138 495.7 272 87.9
Manes.03G080050 Manihot esculenta HOM05D004270 ORTHO05D005037 3.1e-138 495.4 272 88.6
Glyma.18G248300 Glycine max HOM05D004270 ORTHO05D005037 4.1e-138 495.0 270 88.1
Gohir.D08G090400 Gossypium hirsutum HOM05D004270 ORTHO05D005037 5.4e-138 494.6 272 87.9
Phvul.008G049000 Phaseolus vulgaris HOM05D004270 ORTHO05D005037 5.4e-138 494.6 272 87.5
VMungo1383G2841 Vigna mungo HOM05D004270 ORTHO05D005037 5.4e-138 494.6 272 86.8
Actinidia07391 Actinidia chinensis HOM05D004270 ORTHO05D005037 7.0e-138 494.2 272 87.5
Sabra05G0151600 Salix brachista HOM05D004270 ORTHO05D005037 7.0e-138 494.2 293 83.3
BraA02t07287Z Brassica rapa HOM05D004270 ORTHO05D005037 1.6e-137 493.0 273 89.7
CARHR016810 Cardamine hirsuta HOM05D004270 ORTHO05D005037 1.6e-137 493.0 270 89.6
TWI12G0564 Tripterygium wilfordii HOM05D004270 ORTHO05D005037 1.6e-137 493.0 272 89.0
Migut.H01658 Erythranthe guttata HOM05D004270 ORTHO05D005037 2.0e-137 492.7 272 87.1
A02p22860 Brassica napus HOM05D004270 ORTHO05D005037 2.7e-137 492.3 276 89.1
Gorai.004G095400 Gossypium raimondii HOM05D004270 ORTHO05D005037 2.7e-137 492.3 272 87.5
CANSAT78G1193 Cannabis sativa HOM05D004270 ORTHO05D005037 3.5e-137 491.9 270 88.1
TAR636G3127 Trochodendron aralioides HOM05D004270 ORTHO05D005037 3.5e-137 491.9 272 87.5
Aqoxy7G03543 Aquilegia oxysepala HOM05D004270 ORTHO05D005037 5.9e-137 491.1 270 87.4
AT1G16340 Arabidopsis thaliana HOM05D004270 ORTHO05D005037 5.9e-137 491.1 270 89.3
Gohir.A08G080300 Gossypium hirsutum HOM05D004270 ORTHO05D005037 5.9e-137 491.1 272 87.5
PSO675G6017 Papaver somniferum HOM05D004270 ORTHO05D005037 7.8e-137 490.7 272 88.6
PGR119G1968 Punica granatum HOM05D004270 ORTHO05D005037 7.8e-137 490.7 270 87.4
arahy.Tifrunner.gnm1.ann1.WIVF2E Arachis hypogaea HOM05D004270 ORTHO05D005037 1.3e-136 490.0 279 85.3
Sc15g0006060 Simmondsia chinensis HOM05D004270 ORTHO05D005037 1.3e-136 490.0 272 86.4
EL10Ac2g04029 Beta vulgaris HOM05D004270 ORTHO05D005037 1.7e-136 489.6 286 84.3
C02p36680 Brassica napus HOM05D004270 ORTHO05D005037 1.7e-136 489.6 273 88.6
DCAR_016846 Daucus carota HOM05D004270 ORTHO05D005037 1.7e-136 489.6 272 86.4
SGA_v2.0_scaffold49G18204 Striga asiatica HOM05D004270 ORTHO05D005037 1.7e-136 489.6 280 85.7
PSO732G0600 Papaver somniferum HOM05D004270 ORTHO05D005037 3.8e-136 488.4 272 87.1
THA.LOC104813606 Tarenaya hassleriana HOM05D004270 ORTHO05D005037 3.8e-136 488.4 271 87.5
HanXRQChr14g0449761 Helianthus annuus HOM05D004270 ORTHO05D005037 6.6e-136 487.6 286 84.3
AUR62009294 Chenopodium quinoa HOM05D004270 ORTHO05D005037 1.1e-135 486.9 286 83.9
PSO782G4107 Papaver somniferum HOM05D004270 ORTHO05D005037 1.1e-135 486.9 272 86.8
GSVIVG01036737001 Vitis vinifera HOM05D004270 ORTHO05D005037 1.1e-135 486.9 272 87.1
Lj7A89G46 Lonicera japonica HOM05D004270 ORTHO05D005037 1.5e-135 486.5 279 85.7
Hma1.2p1_0151F.1_g067120 Hydrangea macrophylla HOM05D004270 ORTHO05D005037 1.9e-135 486.1 272 86.0
AL1G28460 Arabidopsis lyrata HOM05D004270 ORTHO05D005037 2.5e-135 485.7 270 87.8
C06p29850 Brassica napus HOM05D004270 ORTHO05D005037 3.3e-135 485.3 272 89.0
BolC6t38147H Brassica oleracea HOM05D004270 ORTHO05D005037 3.3e-135 485.3 272 89.0
Os12g0210800 Oryza sativa ssp. japonica HOM05D004270 ORTHO05D005037 5.6e-135 484.6 270 87.0
BraA07t30356Z Brassica rapa HOM05D004270 ORTHO05D005037 7.3e-135 484.2 272 88.6
A07p27110 Brassica napus HOM05D004270 ORTHO05D005037 9.5e-135 483.8 272 88.2
Lsat_1_v5_gn_2_88340 Lactuca sativa HOM05D004270 ORTHO05D005037 9.5e-135 483.8 286 83.9
MSTRG.16093 Avicennia marina HOM05D004270 ORTHO05D005037 1.6e-134 483.0 272 84.2
Solyc11g072690.2 Solanum lycopersicum HOM05D004270 ORTHO05D005037 1.6e-134 483.0 271 86.0
Sopen11g030360 Solanum pennellii HOM05D004270 ORTHO05D005037 1.6e-134 483.0 271 86.0
AUR62041708 Chenopodium quinoa HOM05D004270 ORTHO05D005037 2.1e-134 482.6 286 83.2
AUR62043393 Chenopodium quinoa HOM05D004270 ORTHO05D005037 2.1e-134 482.6 286 83.2
unitig_744.g24505 Utricularia gibba HOM05D004270 ORTHO05D005037 2.8e-134 482.3 273 85.7
Ah.15g099350 Amaranthus hybridus HOM05D004270 ORTHO05D005037 3.6e-134 481.9 286 82.9
Ah.15g099360 Amaranthus hybridus HOM05D004270 ORTHO05D005037 3.6e-134 481.9 286 82.9
PGSC0003DMG400025362 Solanum tuberosum HOM05D004270 ORTHO05D005037 4.7e-134 481.5 271 86.0
Aa31LG4G1520 Aethionema arabicum HOM05D004270 ORTHO05D005037 6.1e-134 481.1 273 87.5
Carub.0001s1608 Capsella rubella HOM05D004270 ORTHO05D005037 6.1e-134 481.1 271 88.2
CAN.G84.19 Capsicum annuum HOM05D004270 ORTHO05D005037 6.1e-134 481.1 271 85.6
MSTRG.13089 Avicennia marina HOM05D004270 ORTHO05D005037 8.0e-134 480.7 272 84.6
Ah.15g099340 Amaranthus hybridus HOM05D004270 ORTHO05D005037 1.0e-133 480.3 272 85.3
ECA238G3087 Erigeron canadensis HOM05D004270 ORTHO05D005037 1.0e-133 480.3 270 85.9
HPP92_024995 Vanilla planifolia HOM05D004270 ORTHO05D005037 1.0e-133 480.3 272 86.0
BcaC08g45351 Brassica carinata HOM05D004270 ORTHO05D005037 1.4e-133 479.9 278 85.6
Cc11_g02350 Coffea canephora HOM05D004270 ORTHO05D005037 1.8e-133 479.6 272 84.2
BolC2t09663H Brassica oleracea HOM05D004270 ORTHO05D005037 5.2e-133 478.0 277 86.6
CSS0009623 Camellia sinensis var. sinensis HOM05D004270 ORTHO05D005037 6.8e-133 477.6 259 88.0
Lj7A89G45 Lonicera japonica HOM05D004270 ORTHO05D005037 2.0e-132 476.1 276 85.1
vmacro23274 Vaccinium macrocarpon HOM05D004270 ORTHO05D005037 2.6e-132 475.7 300 79.3
SGA_v2.0_scaffold239G44014 Striga asiatica HOM05D004270 ORTHO05D005037 1.9e-130 469.5 259 86.5
Zm00001eb138330 Zea mays HOM05D004270 ORTHO05D005037 1.7e-128 463.0 269 84.8
BcaB05g25203 Brassica carinata HOM05D004270 ORTHO05D005037 2.3e-128 462.6 274 85.8
PGR119G0090 Punica granatum HOM05D004270 ORTHO05D005037 1.1e-127 460.3 270 83.7
MBI07_g44658_MAGBIO Magnolia biondii HOM05D004270 ORTHO05D005037 1.2e-126 456.8 272 83.8
ATR0743G256 Amborella trichopoda HOM05D004270 ORTHO05D005037 2.1e-126 456.1 256 86.3
ATR0561G061 Amborella trichopoda HOM05D004270 ORTHO05D005037 3.6e-126 455.3 256 86.7
vmacro11688 Vaccinium macrocarpon HOM05D004270 ORTHO05D005037 6.2e-126 454.5 344 69.2
Eucgr.K01360 Eucalyptus grandis HOM05D004270 ORTHO05D005037 3.1e-125 452.2 247 88.7
SalBow8G2534 Salvia bowleyana HOM05D004270 ORTHO05D005037 1.3e-123 446.8 293 78.5
SalBow8G3927 Salvia bowleyana HOM05D004270 ORTHO05D005037 1.3e-123 446.8 293 78.5
Rhsim06G0243500 Rhododendron simsii HOM05D004270 ORTHO05D005037 2.4e-122 442.6 281 79.0
Rhsim03G0145800 Rhododendron simsii HOM05D004270 ORTHO05D005037 3.2e-122 442.2 293 77.1
Oeu026000.2 Olea europaea HOM05D004270 ORTHO05D005037 4.6e-121 438.3 330 68.5
RcHm_v2.0_Chr6g0274781 Rosa chinensis HOM05D004270 ORTHO05D005037 6.0e-121 438.0 275 83.3
Lj4A247G30 Lonicera japonica HOM05D004270 ORTHO05D005037 1.7e-120 436.4 242 87.6
Duzib187G1262 Durio zibethinus HOM05D004270 ORTHO05D005037 2.3e-120 436.0 239 90.0
DCAR_013716 Daucus carota HOM05D004270 ORTHO05D005037 8.6e-120 434.1 239 87.0
Pp3c22_7420 Physcomitrium patens HOM05D004270 ORTHO05D005037 4.0e-117 425.2 265 76.6
SMO347G0325 Selaginella moellendorffii HOM05D004270 ORTHO05D005037 5.2e-117 424.9 253 79.4
Nitab4.5_0004015g0030 Nicotiana tabacum HOM05D004270 ORTHO05D005037 7.5e-116 421.0 271 77.5
Peaxi162Scf00616g00418 Petunia axillaris HOM05D004270 ORTHO05D005037 3.2e-114 415.6 271 76.4
AagrBONN_evm.TU.Sc2ySwM_344.2891 Anthoceros agrestis HOM05D004270 ORTHO05D005037 4.6e-113 411.8 266 71.8
Hma1.2p1_2351F.1_g320490 Hydrangea macrophylla HOM05D004270 ORTHO05D005037 1.0e-112 410.6 278 75.2
PSO832G2042 Papaver somniferum HOM05D004270 ORTHO05D005037 2.8e-110 402.5 272 76.5
vmacro08704 Vaccinium macrocarpon HOM05D004270 ORTHO05D005037 8.7e-104 380.9 375 58.4
Mapoly0024s0056 Marchantia polymorpha HOM05D004270 ORTHO05D005037 8.1e-102 374.4 286 65.4
CiPaw.13G024200 Carya illinoinensis HOM05D004270 ORTHO05D005037 2.4e-101 372.9 201 90.5
QL04p093439 Quercus lobata HOM05D004270 ORTHO05D005037 6.4e-99 364.8 397 54.2
arahy.Tifrunner.gnm1.ann1.S8QNVY Arachis hypogaea HOM05D004270 ORTHO05D005037 2.7e-97 359.4 275 68.4
Nitab4.5_0006659g0030 Nicotiana tabacum HOM05D004270 ORTHO05D005037 6.6e-96 354.8 198 85.9
arahy.Tifrunner.gnm1.ann1.IC77ZE Arachis hypogaea HOM05D004270 ORTHO05D005037 3.8e-91 339.0 271 67.2
CDE05G0560 Ceratophyllum demersum HOM05D004270 ORTHO05D005037 3.9e-88 328.9 189 84.7
Cpa.g.sc32.74 Carica papaya HOM05D004270 ORTHO05D005037 5.1e-88 328.6 173 90.2
SHI21470 Sapria himalayana HOM05D004270 ORTHO05D005037 8.4e-83 311.2 273 62.3
Cfa020378 Carpinus fangiana HOM05D004270 ORTHO05D005037 2.8e-78 296.2 243 65.8
CBR_g41577 Chara braunii HOM05D000019 ORTHO05D000048 9.0e-69 264.6 153 81.7
arahy.Tifrunner.gnm1.ann1.06J840 Arachis hypogaea HOM05D004270 ORTHO05D005037 2.6e-68 263.1 194 70.6
Haze_26612 Corylus avellana HOM05D004270 ORTHO05D005037 1.4e-66 257.3 256 50.0
arahy.Tifrunner.gnm1.ann1.IZH1PK Arachis hypogaea HOM05D004270 ORTHO05D005037 4.4e-55 219.2 193 63.7
arahy.Tifrunner.gnm1.ann1.BQF4LJ Arachis hypogaea HOM05D004270 ORTHO05D005037 7.7e-52 208.4 131 80.2
arahy.Tifrunner.gnm1.ann1.C4QR2M Arachis hypogaea HOM05D004270 ORTHO05D005037 7.7e-52 208.4 131 80.2
QL04p092150 Quercus lobata HOM05D004270 ORTHO05D005037 7.5e-39 165.2 141 63.8
MBI10_g05703_MAGBIO Magnolia biondii HOM05D004270 ORTHO05D005037 4.8e-30 136.0 129 59.7
SEGI_39104 Sequoiadendron giganteum HOM05D004270 ORTHO05D005037 8.9e-24 115.2 78 71.8
Lsat_1_v5_gn_3_92901 Lactuca sativa HOM05D004270 ORTHO05D005037 3.4e-23 113.2 72 69.4
arahy.Tifrunner.gnm1.ann1.J4JBIL Arachis hypogaea HOM05D004270 ORTHO05D005037 2.0e-20 104.0 88 61.4
arahy.Tifrunner.gnm1.ann1.SB2A23 Arachis hypogaea HOM05D004270 ORTHO05D005037 2.0e-20 104.0 88 61.4
vmacro07967 Vaccinium macrocarpon HOM05D004270 ORTHO05D007590 2.7e-20 103.6 65 73.8
Lsat_1_v5_gn_2_10621 Lactuca sativa HOM05D004270 ORTHO05D005037 1.0e-19 101.7 64 76.6
RcHm_v2.0_Chr2g0110821 Rosa chinensis HOM05D004270 ORTHO05D005037 1.3e-14 84.7 45 88.9
FAN12G0414 Fragaria x ananassa HOM05D000835 ORTHO05D035555 1.1e-13 81.6 90 58.9
FAN12G0605 Fragaria x ananassa HOM05D000835 ORTHO05D035555 1.1e-13 81.6 90 58.9
arahy.Tifrunner.gnm1.ann1.8HXD5I Arachis hypogaea HOM05D004270 ORTHO05D005037 2.4e-13 80.5 46 80.4
arahy.Tifrunner.gnm1.ann1.FF7QMU Arachis hypogaea HOM05D004270 ORTHO05D005037 4.7e-09 66.2 45 64.4
TAR636G1752 Trochodendron aralioides HOM05D004270 ORTHO05D005037 2.0e-07 60.8 37 81.1
SEGI_07848 Sequoiadendron giganteum HOM05D004270 ORTHO05D005037 1.3e-06 58.2 47 61.7
Dinv19578 Davidia involucrata HOM05D006464 ORTHO05D007923 6.4e-06 55.8 32 81.2


User provided reference genes

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