Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN16G0878 Fragaria x ananassa HOM05D004256 ORTHO05D005224 0.0e+00 1953.7 989 100.0
FAN21G3884 Fragaria x ananassa HOM05D004256 ORTHO05D005224 0.0e+00 1856.6 989 96.1
FvH4_3g10230 Fragaria vesca HOM05D004256 ORTHO05D005224 0.0e+00 1832.8 990 95.1
FAN11G3535 Fragaria x ananassa HOM05D004256 ORTHO05D005224 0.0e+00 1766.1 1037 89.3
RcHm_v2.0_Chr5g0016471 Rosa chinensis HOM05D004256 ORTHO05D005224 0.0e+00 1688.3 986 87.8
Prupe.4G091400 Prunus persica HOM05D004256 ORTHO05D005224 0.0e+00 1345.1 978 71.3
MD05G1271600 Malus domestica HOM05D004256 ORTHO05D005224 0.0e+00 1323.9 993 70.3
MD10G1252200 Malus domestica HOM05D004256 ORTHO05D005224 0.0e+00 1295.4 993 68.6
FAN18G3233 Fragaria x ananassa HOM05D004256 ORTHO05D005224 0.0e+00 1231.5 947 72.8
CiPaw.09G142400 Carya illinoinensis HOM05D004256 ORTHO05D005224 0.0e+00 1149.0 992 61.2
QL05p062735 Quercus lobata HOM05D004256 ORTHO05D005224 0.0e+00 1142.9 991 61.3
Cfa004790 Carpinus fangiana HOM05D004256 ORTHO05D005224 0.0e+00 1130.9 984 60.9
FAN18G2742 Fragaria x ananassa HOM05D004256 ORTHO05D005224 0.0e+00 1128.6 913 69.9
FAN13G2402 Fragaria x ananassa HOM05D004256 ORTHO05D005224 0.0e+00 1111.7 801 75.9
Atru.chr10.795 Acer truncatum HOM05D004256 ORTHO05D005224 0.0e+00 1095.1 983 59.6
Manes.06G068000 Manihot esculenta HOM05D004256 ORTHO05D005224 0.0e+00 1092.4 992 57.8
Potri.001G465500 Populus trichocarpa HOM05D004256 ORTHO05D005224 0.0e+00 1091.6 982 59.5
Dinv11058 Davidia involucrata HOM05D004256 ORTHO05D005224 0.0e+00 1085.5 996 57.7
GSVIVG01021670001 Vitis vinifera HOM05D004256 ORTHO05D005224 0.0e+00 1083.6 985 57.8
Thecc.06G004200 Theobroma cacao HOM05D004256 ORTHO05D005224 0.0e+00 1078.9 994 57.1
Sabra16G0315900 Salix brachista HOM05D004256 ORTHO05D005224 0.0e+00 1076.6 983 58.6
COL.COLO4_26853 Corchorus olitorius HOM05D004256 ORTHO05D005224 0.0e+00 1075.8 996 57.6
Ciclev10014179m.g Citrus clementina HOM05D004256 ORTHO05D005224 0.0e+00 1075.1 983 59.2
CANSAT35G1931 Cannabis sativa HOM05D004256 ORTHO05D005224 1.4e-310 1069.7 990 56.5
CsaV3_1G037200 Cucumis sativus L. HOM05D004256 ORTHO05D005224 4.8e-308 1061.2 987 56.3
TWI38G1119 Tripterygium wilfordii HOM05D004256 ORTHO05D005224 1.1e-307 1060.1 982 57.0
MELO3C002826.2 Cucumis melo HOM05D004256 ORTHO05D005224 1.4e-307 1059.7 987 56.6
Duzib192G0446 Durio zibethinus HOM05D004256 ORTHO05D005224 3.1e-307 1058.5 981 57.7
TAR627G0580 Trochodendron aralioides HOM05D004256 ORTHO05D005224 1.2e-306 1056.6 992 57.0
TWI63G0578 Tripterygium wilfordii HOM05D004256 ORTHO05D005224 1.3e-305 1053.1 981 57.6
ClCG03G008210 Citrullus lanatus HOM05D004256 ORTHO05D005224 2.7e-303 1045.4 988 56.1
Gohir.A06G119600 Gossypium hirsutum HOM05D004256 ORTHO05D005224 7.7e-298 1027.3 994 56.2
Gorai.010G144100 Gossypium raimondii HOM05D004256 ORTHO05D005224 4.2e-296 1021.5 963 57.2
Eucgr.K01946 Eucalyptus grandis HOM05D004256 ORTHO05D005224 2.0e-293 1012.7 991 54.7
Cc09_g07800 Coffea canephora HOM05D004256 ORTHO05D005224 5.9e-290 1001.1 995 54.3
Rhsim02G0162800 Rhododendron simsii HOM05D004256 ORTHO05D005224 3.2e-288 995.3 999 55.1
Lalb_Chr12g0208801 Lupinus albus HOM05D004256 ORTHO05D005224 7.9e-287 990.7 986 54.7
Sopen02g019190 Solanum pennellii HOM05D004256 ORTHO05D005224 2.4e-283 979.2 989 54.3
Lalb_Chr13g0291451 Lupinus albus HOM05D004256 ORTHO05D005224 2.6e-282 975.7 988 53.9
CAN.G79.16 Capsicum annuum HOM05D004256 ORTHO05D005224 3.5e-282 975.3 979 53.9
Lj4g0013937 Lotus japonicus HOM05D004256 ORTHO05D005224 3.5e-282 975.3 990 53.5
PGR031G3593 Punica granatum HOM05D004256 ORTHO05D005224 3.5e-282 975.3 991 53.7
Peaxi162Scf00670g00215 Petunia axillaris HOM05D004256 ORTHO05D005224 5.9e-282 974.5 1007 52.9
Solyc02g070030.4 Solanum lycopersicum HOM05D004256 ORTHO05D005224 2.2e-281 972.6 989 53.9
Nitab4.5_0001225g0210 Nicotiana tabacum HOM05D004256 ORTHO05D005224 2.5e-280 969.1 984 53.9
Phvul.002G198200 Phaseolus vulgaris HOM05D004256 ORTHO05D005224 7.2e-280 967.6 984 53.8
arahy.Tifrunner.gnm1.ann1.71MGM7 Arachis hypogaea HOM05D004256 ORTHO05D005224 1.8e-278 963.0 990 52.9
Ca_18290_v3 Cicer arietinum L. HOM05D004256 ORTHO05D005224 1.8e-278 963.0 987 54.4
arahy.Tifrunner.gnm1.ann1.NJCF43 Arachis hypogaea HOM05D004256 ORTHO05D005224 3.0e-278 962.2 984 53.4
TPR.G30378 Trifolium pratense HOM05D004256 ORTHO05D005224 3.0e-278 962.2 986 54.0
Glyma.05G126600 Glycine max HOM05D004256 ORTHO05D005224 4.0e-278 961.8 976 54.1
Glyma.08G081600 Glycine max HOM05D004256 ORTHO05D005224 8.8e-278 960.7 982 53.6
DCAR_003847 Daucus carota HOM05D004256 ORTHO05D005224 6.3e-276 954.5 1016 50.8
FAN04G0519 Fragaria x ananassa HOM05D004256 ORTHO05D005224 2.0e-274 949.5 598 82.9
Aqoxy5G02462 Aquilegia oxysepala HOM05D004256 ORTHO05D005224 4.2e-272 941.8 1008 52.7
MBI02_g25367_MAGBIO Magnolia biondii HOM05D004256 ORTHO05D005224 7.2e-272 941.0 997 51.8
Medtr4g094545 Medicago truncatula HOM05D004256 ORTHO05D005224 7.2e-272 941.0 981 53.1
Psat7g093560 Pisum sativum HOM05D004256 ORTHO05D005224 6.1e-271 937.9 1029 50.5
Migut.H01323 Erythranthe guttata HOM05D004256 ORTHO05D005224 4.1e-267 925.2 975 52.1
PSO675G2772 Papaver somniferum HOM05D004256 ORTHO05D005224 2.3e-262 909.4 995 51.5
Lj1A1161T63 Lonicera japonica HOM05D004256 ORTHO05D005224 3.0e-262 909.1 988 51.7
Nitab4.5_0001583g0180 Nicotiana tabacum HOM05D004256 ORTHO05D005224 1.7e-260 903.3 981 51.6
SalBow7G4118 Salvia bowleyana HOM05D004256 ORTHO05D005224 2.8e-260 902.5 980 50.7
Ah.14g086130 Amaranthus hybridus HOM05D004256 ORTHO05D005224 3.7e-260 902.1 996 50.0
Nn2g15522 Nelumbo nucifera HOM05D004256 ORTHO05D005224 8.3e-260 901.0 991 51.2
SGA_v2.0_scaffold106G30680 Striga asiatica HOM05D004256 ORTHO05D005224 5.2e-254 881.7 989 49.6
THA.LOC104812246 Tarenaya hassleriana HOM05D004256 ORTHO05D005224 1.1e-251 874.0 978 49.8
ECA236G4703 Erigeron canadensis HOM05D004256 ORTHO05D005224 3.2e-251 872.5 971 50.8
EL10Ac8g19544 Beta vulgaris HOM05D004256 ORTHO05D005224 2.7e-250 869.4 988 48.6
Potri.011G163600 Populus trichocarpa HOM05D004256 ORTHO05D005224 3.5e-242 842.4 836 55.5
FAN08G1809 Fragaria x ananassa HOM05D004256 ORTHO05D005224 6.0e-242 841.6 533 82.7
HanXRQChr04g0117221 Helianthus annuus HOM05D004256 ORTHO05D005224 6.0e-242 841.6 985 49.2
Aa31LG6G2980 Aethionema arabicum HOM05D004256 ORTHO05D005224 1.0e-241 840.9 986 48.8
Gohir.D06G123900 Gossypium hirsutum HOM05D004256 ORTHO05D005224 1.0e-241 840.9 845 54.6
Oeu014331.2 Olea europaea HOM05D004256 ORTHO05D005224 2.8e-239 832.8 864 53.1
VMungo0251G1323 Vigna mungo HOM05D004256 ORTHO05D005224 6.8e-238 828.2 896 51.5
Lsat_1_v5_gn_7_34341 Lactuca sativa HOM05D004256 ORTHO05D005224 9.9e-237 824.3 965 48.1
Oeu021898.3 Olea europaea HOM05D004256 ORTHO05D005224 2.9e-236 822.8 909 50.3
Os07g0164000 Oryza sativa ssp. japonica HOM05D004256 ORTHO05D005224 1.4e-230 803.9 971 45.7
Sp7g19000 Schrenkiella parvula HOM05D004256 ORTHO05D005224 2.4e-230 803.1 983 47.8
Carub.0007s2052 Capsella rubella HOM05D004256 ORTHO05D005224 1.2e-229 800.8 1012 46.2
AL7G33240 Arabidopsis lyrata HOM05D004256 ORTHO05D005224 1.7e-228 797.0 985 47.6
Thhalv10024326m.g Eutrema salsugineum HOM05D004256 ORTHO05D005224 1.1e-227 794.3 1039 45.8
AT4G20910 Arabidopsis thaliana HOM05D004256 ORTHO05D005224 2.3e-225 786.6 1004 46.7
HPP92_009410 Vanilla planifolia HOM05D004256 ORTHO05D005224 5.6e-224 781.9 994 44.9
Dinv16826 Davidia involucrata HOM05D004256 ORTHO05D005224 6.2e-223 778.5 843 52.0
BolC1t01426H Brassica oleracea HOM05D004256 ORTHO05D005224 1.4e-222 777.3 1008 45.2
Zm00001eb300700 Zea mays HOM05D004256 ORTHO05D005224 5.2e-222 775.4 969 45.3
CARHR227470 Cardamine hirsuta HOM05D004256 ORTHO05D005224 6.9e-222 775.0 990 47.3
BraA01t01176Z Brassica rapa HOM05D004256 ORTHO05D005224 1.7e-220 770.4 1007 45.4
Eucgr.L00874 Eucalyptus grandis HOM05D004256 ORTHO05D005224 2.4e-214 750.0 757 53.2
Sed0001829 Sechium edule HOM05D004256 ORTHO05D005224 1.1e-211 741.1 759 52.6
BraA01t01178Z Brassica rapa HOM05D004256 ORTHO05D005224 5.4e-211 738.8 1007 43.6
Thhalv10024347m.g Eutrema salsugineum HOM05D004256 ORTHO05D005224 2.1e-210 736.9 1003 43.7
AL7G33230 Arabidopsis lyrata HOM05D004256 ORTHO05D005224 4.3e-208 729.2 990 44.1
Carub.0007s2051 Capsella rubella HOM05D004256 ORTHO05D005224 8.1e-207 724.9 995 44.1
BcaC09g51291 Brassica carinata HOM05D004256 ORTHO05D005224 2.9e-204 716.5 1003 43.6
C01p14750 Brassica napus HOM05D004256 ORTHO05D005224 7.1e-203 711.8 1004 43.5
BolC1t01428H Brassica oleracea HOM05D004256 ORTHO05D005224 1.2e-202 711.1 1008 43.3
CSS0036381 Camellia sinensis var. sinensis HOM05D004109 ORTHO05D005867 1.4e-195 687.6 587 62.2
CSS0039858 Camellia sinensis var. sinensis HOM05D004109 ORTHO05D005867 1.6e-194 684.1 587 61.8
A01p12320 Brassica napus HOM05D004256 ORTHO05D005224 1.8e-193 680.6 928 43.6
C01p14740 Brassica napus HOM05D004256 ORTHO05D005224 3.1e-190 669.8 932 43.3
Cpa.g.sc166.41 Carica papaya HOM05D004256 ORTHO05D007693 7.7e-189 665.2 900 45.8
Actinidia31384 Actinidia chinensis HOM05D004256 ORTHO05D005224 2.0e-184 650.6 658 52.1
BcaB03g11710 Brassica carinata HOM05D004256 ORTHO05D005224 6.3e-183 645.6 1070 39.0
Sc17g0004590 Simmondsia chinensis HOM05D004256 ORTHO05D005224 2.9e-172 610.1 689 47.9
Haze_10386 Corylus avellana HOM05D004256 ORTHO05D005224 1.5e-168 597.8 680 49.6
Haze_10384 Corylus avellana HOM05D004256 ORTHO05D005224 4.4e-168 596.3 680 49.6
ATR1098G117 Amborella trichopoda HOM05D004256 ORTHO05D005224 4.8e-167 592.8 895 41.0
CARHR227480 Cardamine hirsuta HOM05D004256 ORTHO05D005224 8.2e-159 565.5 849 41.1
AUR62034030 Chenopodium quinoa HOM05D004256 ORTHO05D005224 9.8e-152 542.0 678 44.2
AUR62043099 Chenopodium quinoa HOM05D004256 ORTHO05D005224 3.1e-150 537.0 669 44.1
AT4G20920 Arabidopsis thaliana HOM05D004256 ORTHO05D005224 9.5e-147 525.4 816 39.8
BcaC09g51292 Brassica carinata HOM05D004256 ORTHO05D005224 8.6e-132 475.7 737 40.0
FAN08G3148 Fragaria x ananassa HOM05D004256 ORTHO05D005224 1.1e-131 475.3 436 62.8
Mapoly0004s0071 Marchantia polymorpha HOM05D004256 ORTHO05D005224 1.8e-129 468.0 1070 32.1
Hma1.2p1_2369F.1_g320760 Hydrangea macrophylla HOM05D004256 ORTHO05D005224 2.0e-128 464.5 500 52.2
unitig_0.g923 Utricularia gibba HOM05D004256 ORTHO05D005224 2.6e-128 464.2 987 34.2
BraA01t01177Z Brassica rapa HOM05D004256 ORTHO05D005224 7.8e-125 452.6 737 38.9
Pp3c1_60 Physcomitrium patens HOM05D004256 ORTHO05D005224 3.6e-122 443.7 977 31.9
SMO165G0118 Selaginella moellendorffii HOM05D004256 ORTHO05D005224 7.8e-117 426.0 883 33.9
FAN25G0985 Fragaria x ananassa HOM05D004256 ORTHO05D005224 1.3e-116 425.2 219 96.3
AagrBONN_evm.TU.Sc2ySwM_117.1656 Anthoceros agrestis HOM05D004256 ORTHO05D005224 1.1e-113 415.6 897 34.7
CSS0013637 Camellia sinensis var. sinensis HOM05D004256 ORTHO05D005224 1.6e-106 391.7 373 54.2
Zm00001eb161380 Zea mays HOM05D004256 ORTHO05D005224 4.2e-102 377.1 611 38.3
CDE02G0763 Ceratophyllum demersum HOM05D004256 ORTHO05D005224 4.5e-96 357.1 614 38.3
Actinidia31383 Actinidia chinensis HOM05D004256 ORTHO05D005224 9.3e-94 349.4 264 67.8
Haze_10382 Corylus avellana HOM05D004256 ORTHO05D005224 1.3e-92 345.5 591 40.3
Sc17g0004580 Simmondsia chinensis HOM05D004256 ORTHO05D005224 3.9e-92 344.0 266 66.9
Sp7g19005 Schrenkiella parvula HOM05D004256 ORTHO05D005224 2.6e-88 331.3 601 35.9
CBR_g29910 Chara braunii HOM05D000019 ORTHO05D005224 2.5e-70 271.6 1159 25.1
BcaNung04718 Brassica carinata HOM05D004256 ORTHO05D005224 8.8e-68 263.1 357 41.7
BolC1t01427H Brassica oleracea HOM05D004256 ORTHO05D005224 1.1e-67 262.7 367 43.3
CDE02G4682 Ceratophyllum demersum HOM05D004256 ORTHO05D005224 2.7e-53 214.9 288 42.0
BcaC01g00730 Brassica carinata HOM05D004256 ORTHO05D005224 7.4e-51 206.8 201 50.2
Dinv16824 Davidia involucrata HOM05D010983 ORTHO05D005224 3.7e-50 204.5 150 69.3
HanXRQChr04g0117231 Helianthus annuus HOM05D004256 ORTHO05D005224 2.9e-47 194.9 293 38.6
BcaC09g51293 Brassica carinata HOM05D004256 ORTHO05D005224 2.3e-44 185.3 245 41.6
BcaC09g51294 Brassica carinata HOM05D004256 ORTHO05D005224 1.2e-43 183.0 143 67.1
SEGI_28315 Sequoiadendron giganteum HOM05D004256 ORTHO05D005224 3.4e-43 181.4 190 51.6
Zm00001eb318270 Zea mays HOM05D004256 ORTHO05D005224 2.2e-39 168.7 306 35.0
Haze_10375 Corylus avellana HOM05D004256 ORTHO05D005224 4.7e-37 161.0 241 42.7
FvH4_5g29180 Fragaria vesca HOM05D004256 ORTHO05D005224 6.1e-37 160.6 93 86.0
BcaNung04717 Brassica carinata HOM05D004256 ORTHO05D005224 2.6e-35 155.2 434 30.0
Haze_01153 Corylus avellana HOM05D004256 ORTHO05D005224 3.3e-30 138.3 165 50.3
CAN.G79.20 Capsicum annuum HOM05D004256 ORTHO05D005224 7.5e-27 127.1 100 64.0
Ca_18291_v3 Cicer arietinum L. HOM05D004256 ORTHO05D005224 7.5e-27 127.1 99 65.7
Zm00001eb318280 Zea mays HOM05D004256 ORTHO05D005224 9.8e-27 126.7 142 52.8
VMungo0251G1407 Vigna mungo HOM05D004256 ORTHO05D005224 3.6e-21 108.2 84 59.5
BcaC06g34131 Brassica carinata HOM05D004256 ORTHO05D005224 3.4e-19 101.7 129 41.9
Zm00001eb357190 Zea mays HOM05D004256 ORTHO05D005224 5.8e-19 100.9 223 29.1
Actinidia33023 Actinidia chinensis HOM05D004256 ORTHO05D005224 8.3e-18 97.1 77 62.3
Cre03.g191200 Chlamydomonas reinhardtii HOM05D004256 ORTHO05D005224 1.1e-17 96.7 282 27.3
BcaC08g44368 Brassica carinata HOM05D004256 ORTHO05D005224 5.4e-17 94.4 154 36.4
BcaC04g20971 Brassica carinata HOM05D004256 ORTHO05D005224 3.9e-15 88.2 154 35.1
PGSC0003DMG400021115 Solanum tuberosum HOM05D004256 ORTHO05D005224 4.3e-14 84.7 120 42.5
arahy.Tifrunner.gnm1.ann1.2P4BCH Arachis hypogaea HOM05D004256 ORTHO05D005224 1.8e-12 79.3 243 27.6
SEGI_09964 Sequoiadendron giganteum HOM05D000070 ORTHO05D005224 5.2e-12 77.8 67 56.7
BcaC02g08729 Brassica carinata HOM05D004256 ORTHO05D021760 7.5e-11 73.9 96 41.7
BolC1t01694H Brassica oleracea HOM05D004256 ORTHO05D021760 6.4e-10 70.9 102 38.2
BcaC09g51040 Brassica carinata HOM05D004256 ORTHO05D005224 4.1e-09 68.2 84 42.9
BolC1t04773H Brassica oleracea HOM05D004256 ORTHO05D021760 7.1e-09 67.4 81 43.2
BcaC01g00450 Brassica carinata HOM05D004256 ORTHO05D032009 9.2e-09 67.0 85 41.2
C01p17580 Brassica napus HOM05D004256 ORTHO05D005224 9.2e-09 67.0 102 36.3
C03p79980 Brassica napus HOM05D004256 ORTHO05D032009 9.2e-09 67.0 85 41.2
BolC3t20250H Brassica oleracea HOM05D004256 ORTHO05D032009 9.2e-09 67.0 85 41.2
BolC6t37010H Brassica oleracea HOM05D004256 ORTHO05D005224 6.0e-08 64.3 121 33.9


User provided reference genes

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