Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN15G2922 Fragaria x ananassa HOM05D004741 ORTHO05D005454 2.7e-249 864.8 411 100.0
FvH4_2g41360 Fragaria vesca HOM05D004741 ORTHO05D005454 9.4e-242 839.7 411 96.8
RcHm_v2.0_Chr6g0299131 Rosa chinensis HOM05D004741 ORTHO05D005454 4.2e-234 814.3 409 93.4
MD15G1043800 Malus domestica HOM05D004741 ORTHO05D005454 5.6e-202 707.6 402 80.8
Manes.03G006700 Manihot esculenta HOM05D004741 ORTHO05D005454 2.1e-193 679.1 410 77.6
CiPaw.07G232700 Carya illinoinensis HOM05D004741 ORTHO05D005454 8.4e-190 667.2 413 75.5
CsaV3_2G032600 Cucumis sativus L. HOM05D004741 ORTHO05D005454 4.2e-189 664.8 409 74.6
ClCG08G013810 Citrullus lanatus HOM05D004741 ORTHO05D005454 2.1e-188 662.5 405 74.8
MELO3C011313.2 Cucumis melo HOM05D004741 ORTHO05D005454 1.7e-187 659.4 409 74.8
CSS0005545 Camellia sinensis var. sinensis HOM05D004741 ORTHO05D005454 7.3e-186 654.1 412 74.8
RcHm_v2.0_Chr2g0135121 Rosa chinensis HOM05D004741 ORTHO05D005454 9.6e-186 653.7 404 78.7
TWI32G1217 Tripterygium wilfordii HOM05D004741 ORTHO05D005454 2.8e-185 652.1 401 74.8
Atru.chr7.2571 Acer truncatum HOM05D004741 ORTHO05D005454 4.8e-185 651.4 400 75.5
GSVIVG01009251001 Vitis vinifera HOM05D004741 ORTHO05D005454 4.8e-185 651.4 380 77.9
Nn8g39668 Nelumbo nucifera HOM05D004741 ORTHO05D005454 1.1e-184 650.2 411 73.2
Sed0002897 Sechium edule HOM05D004741 ORTHO05D005454 6.9e-184 647.5 405 74.1
Thecc.09G013800 Theobroma cacao HOM05D004741 ORTHO05D005454 1.5e-183 646.4 407 73.2
QL02p018098 Quercus lobata HOM05D004741 ORTHO05D005454 2.6e-183 645.6 410 74.1
Potri.018G015300 Populus trichocarpa HOM05D004741 ORTHO05D005454 5.8e-183 644.4 416 73.1
Dinv22023 Davidia involucrata HOM05D004741 ORTHO05D005454 7.6e-183 644.0 387 75.2
TAR625G0772 Trochodendron aralioides HOM05D004741 ORTHO05D005454 9.9e-183 643.7 414 72.2
Eucgr.C04030 Eucalyptus grandis HOM05D004741 ORTHO05D005454 1.3e-182 643.3 409 74.3
PSO210G2241 Papaver somniferum HOM05D004741 ORTHO05D005454 2.2e-182 642.5 409 72.6
Lj4A81G69 Lonicera japonica HOM05D004741 ORTHO05D005454 3.8e-182 641.7 455 67.5
EL10Ac1g02297 Beta vulgaris HOM05D004741 ORTHO05D005454 1.1e-181 640.2 407 73.0
PSO761G0470 Papaver somniferum HOM05D004741 ORTHO05D005454 1.9e-181 639.4 417 72.2
arahy.Tifrunner.gnm1.ann1.68HE9A Arachis hypogaea HOM05D004741 ORTHO05D005454 9.3e-181 637.1 419 70.4
arahy.Tifrunner.gnm1.ann1.HM8GSV Arachis hypogaea HOM05D004741 ORTHO05D005454 2.7e-180 635.6 419 70.2
Sc02g0008350 Simmondsia chinensis HOM05D004741 ORTHO05D005454 1.0e-179 633.6 407 72.5
THA.LOC104803607 Tarenaya hassleriana HOM05D004741 ORTHO05D005454 1.1e-178 630.2 415 70.1
ECA246G1320 Erigeron canadensis HOM05D004741 ORTHO05D005454 4.3e-178 628.2 401 72.3
Duzib168G2074 Durio zibethinus HOM05D004741 ORTHO05D005454 1.6e-177 626.3 418 69.6
BcaNung01502 Brassica carinata HOM05D004741 ORTHO05D005454 2.8e-177 625.5 412 70.1
Gohir.D11G176300 Gossypium hirsutum HOM05D004741 ORTHO05D005454 3.6e-177 625.2 403 70.7
DCAR_020033 Daucus carota HOM05D004741 ORTHO05D005454 8.1e-177 624.0 405 70.6
Cfa013018 Carpinus fangiana HOM05D004741 ORTHO05D005454 1.8e-176 622.9 415 71.1
AUR62035754 Chenopodium quinoa HOM05D004741 ORTHO05D005454 3.1e-176 622.1 414 70.0
Glyma.04G059700 Glycine max HOM05D004741 ORTHO05D005454 4.0e-176 621.7 413 70.2
Lsat_1_v5_gn_6_106561 Lactuca sativa HOM05D004741 ORTHO05D005454 4.0e-176 621.7 381 73.5
VMungo1309G1293 Vigna mungo HOM05D004741 ORTHO05D005454 4.0e-176 621.7 404 71.0
COL.COLO4_18967 Corchorus olitorius HOM05D004741 ORTHO05D005454 2.0e-175 619.4 407 71.0
CARHR239670 Cardamine hirsuta HOM05D004741 ORTHO05D005454 2.6e-175 619.0 413 70.0
Lsat_1_v5_gn_4_135621 Lactuca sativa HOM05D004741 ORTHO05D005454 2.6e-175 619.0 403 70.5
Medtr3g105810 Medicago truncatula HOM05D004741 ORTHO05D005454 4.5e-175 618.2 402 72.1
Aa31LG2G18560 Aethionema arabicum HOM05D004741 ORTHO05D005454 5.8e-175 617.8 413 68.3
Peaxi162Scf00005g04810 Petunia axillaris HOM05D004741 ORTHO05D005454 9.9e-175 617.1 410 70.7
CAN.G673.1 Capsicum annuum HOM05D004741 ORTHO05D005454 1.3e-174 616.7 409 70.9
HanXRQChr10g0277671 Helianthus annuus HOM05D004741 ORTHO05D005454 1.7e-174 616.3 368 75.0
Psat5g034520 Pisum sativum HOM05D004741 ORTHO05D005454 3.8e-174 615.1 410 71.0
C07p58870 Brassica napus HOM05D004741 ORTHO05D005454 6.4e-174 614.4 419 69.0
Sabra18G0018800 Salix brachista HOM05D004741 ORTHO05D005454 6.4e-174 614.4 380 73.7
Aqoxy5G01951 Aquilegia oxysepala HOM05D004741 ORTHO05D005454 2.4e-173 612.5 399 71.2
Solyc07g017640.2 Solanum lycopersicum HOM05D004741 ORTHO05D005454 4.2e-173 611.7 410 69.3
Lalb_Chr08g0244491 Lupinus albus HOM05D004741 ORTHO05D005454 9.3e-173 610.5 402 70.9
Ca_15788_v3 Cicer arietinum L. HOM05D004741 ORTHO05D005454 1.2e-172 610.1 414 69.8
A08p18460 Brassica napus HOM05D004741 ORTHO05D005454 2.7e-172 609.0 415 69.4
Thhalv10025305m.g Eutrema salsugineum HOM05D004741 ORTHO05D005454 3.5e-172 608.6 404 71.0
BcaNung04120 Brassica carinata HOM05D004741 ORTHO05D005454 4.6e-172 608.2 413 69.0
Oeu016078.1 Olea europaea HOM05D004741 ORTHO05D005454 6.0e-172 607.8 405 70.1
vmacro21376 Vaccinium macrocarpon HOM05D004741 ORTHO05D005454 6.0e-172 607.8 462 64.3
AT4G31770 Arabidopsis thaliana HOM05D004741 ORTHO05D005454 1.0e-171 607.1 413 69.0
BraA03t15138Z Brassica rapa HOM05D004741 ORTHO05D005454 1.0e-171 607.1 417 68.6
BcaB03g12718 Brassica carinata HOM05D004741 ORTHO05D005454 1.8e-171 606.3 418 69.9
BraA08t33808Z Brassica rapa HOM05D004741 ORTHO05D005454 1.8e-171 606.3 415 69.4
MBI16_g14670_MAGBIO Magnolia biondii HOM05D004741 ORTHO05D005454 3.9e-171 605.1 408 70.3
Lj1g0020479 Lotus japonicus HOM05D004741 ORTHO05D005454 5.1e-171 604.7 407 69.0
Sopen07g006470 Solanum pennellii HOM05D004741 ORTHO05D005454 5.1e-171 604.7 410 69.0
Carub.0007s0879 Capsella rubella HOM05D004741 ORTHO05D005454 6.7e-171 604.4 414 68.4
Sp7g29560 Schrenkiella parvula HOM05D004741 ORTHO05D005454 6.7e-171 604.4 401 69.6
BolC7t46334H Brassica oleracea HOM05D004741 ORTHO05D005454 1.1e-170 603.6 417 68.1
TPR.G1862 Trifolium pratense HOM05D004741 ORTHO05D005454 1.9e-170 602.8 384 71.4
A03p60970 Brassica napus HOM05D004741 ORTHO05D005454 1.6e-169 599.7 438 66.0
AL7G20240 Arabidopsis lyrata HOM05D004741 ORTHO05D005454 1.4e-168 596.7 413 68.3
MSTRG.20476 Avicennia marina HOM05D004741 ORTHO05D005454 2.4e-168 595.9 410 67.3
BolC3t21075H Brassica oleracea HOM05D004741 ORTHO05D005454 4.5e-167 591.7 420 67.6
C03p87550 Brassica napus HOM05D004741 ORTHO05D005454 8.4e-166 587.4 415 67.7
Cc00_g23510 Coffea canephora HOM05D004741 ORTHO05D005454 8.4e-166 587.4 407 66.1
CDE06G0415 Ceratophyllum demersum HOM05D004741 ORTHO05D005454 1.9e-165 586.3 409 67.7
Migut.K00575 Erythranthe guttata HOM05D004741 ORTHO05D005454 9.3e-165 583.9 411 66.2
Zm00001eb215780 Zea mays HOM05D004741 ORTHO05D005454 4.6e-164 581.6 402 67.7
ATR0767G225 Amborella trichopoda HOM05D004741 ORTHO05D005454 1.9e-162 576.2 411 64.7
Phvul.009G085900 Phaseolus vulgaris HOM05D004741 ORTHO05D005454 3.7e-161 572.0 339 74.3
Nitab4.5_0006397g0010 Nicotiana tabacum HOM05D004741 ORTHO05D005454 6.2e-161 571.2 341 74.2
PGSC0003DMG400002300 Solanum tuberosum HOM05D004741 ORTHO05D005454 1.4e-160 570.1 364 72.3
Atru.BG.288.p Acer truncatum HOM05D004741 ORTHO05D005454 3.2e-157 558.9 375 68.8
Aqoxy1G00870 Aquilegia oxysepala HOM05D004741 ORTHO05D005454 3.5e-156 555.4 373 70.0
BcaNung01500 Brassica carinata HOM05D004741 ORTHO05D005454 8.7e-155 550.8 412 65.0
Cpa.g.sc40.1 Carica papaya HOM05D004741 ORTHO05D005454 7.4e-154 547.7 300 80.3
Ah.04g152730 Amaranthus hybridus HOM05D004741 ORTHO05D005454 4.5e-151 538.5 442 59.7
Aqoxy4G02579 Aquilegia oxysepala HOM05D004741 ORTHO05D005454 2.9e-150 535.8 369 70.2
unitig_744.g24377 Utricularia gibba HOM05D004741 ORTHO05D005454 3.8e-150 535.4 400 62.2
Rhsim06G0068400 Rhododendron simsii HOM05D004741 ORTHO05D005454 5.7e-146 521.5 415 61.7
Prupe.1G397300 Prunus persica HOM05D004741 ORTHO05D005454 1.7e-145 520.0 307 80.1
FvH4_6g29560 Fragaria vesca HOM05D004741 ORTHO05D005454 3.7e-145 518.8 345 72.8
SalBow7G1987 Salvia bowleyana HOM05D004741 ORTHO05D005454 5.3e-144 515.0 365 66.0
FAN14G3005 Fragaria x ananassa HOM05D004741 ORTHO05D005454 1.2e-143 513.8 345 72.5
SalBow7G0863 Salvia bowleyana HOM05D004741 ORTHO05D005454 2.0e-143 513.1 365 65.8
RcHm_v2.0_Chr1g0357361 Rosa chinensis HOM05D004741 ORTHO05D005454 4.7e-140 501.9 261 92.0
Mapoly0014s0124 Marchantia polymorpha HOM05D004741 ORTHO05D005454 1.5e-138 496.9 411 58.4
HPP92_007721 Vanilla planifolia HOM05D004741 ORTHO05D005454 9.7e-138 494.2 379 61.7
SEGI_18909 Sequoiadendron giganteum HOM05D004741 ORTHO05D005454 8.2e-137 491.1 347 63.7
Gohir.1Z049533 Gossypium hirsutum HOM05D004741 ORTHO05D005454 1.2e-132 477.2 408 59.1
Pp3c24_19510 Physcomitrium patens HOM05D004741 ORTHO05D005454 2.1e-132 476.5 417 56.6
Gohir.A02G000200 Gossypium hirsutum HOM05D004741 ORTHO05D005454 1.0e-131 474.2 362 63.5
SMO284G0001 Selaginella moellendorffii HOM05D004741 ORTHO05D005454 1.3e-129 467.2 374 58.8
SMO145G0212 Selaginella moellendorffii HOM05D004741 ORTHO05D005454 2.8e-129 466.1 372 58.6
Hund05236 Selenicereus undatus HOM05D004741 ORTHO05D005454 1.4e-128 463.8 313 68.7
Gohir.A11G330400 Gossypium hirsutum HOM05D004741 ORTHO05D005454 2.6e-127 459.5 406 56.7
BcaC01g01061 Brassica carinata HOM05D004741 ORTHO05D005454 1.2e-122 444.1 352 62.8
AUR62033828 Chenopodium quinoa HOM05D004741 ORTHO05D005454 1.7e-121 440.3 398 56.3
MD08G1051300 Malus domestica HOM05D004741 ORTHO05D005454 8.3e-121 438.0 259 79.2
SGA_v2.0_scaffold443G51691 Striga asiatica HOM05D004741 ORTHO05D005454 4.1e-120 435.6 409 51.6
CBR_g10907 Chara braunii HOM05D004741 ORTHO05D005454 2.0e-119 433.3 420 50.2
SGA_v2.0_scaffold48G18066 Striga asiatica HOM05D004741 ORTHO05D005454 1.9e-117 426.8 320 62.8
Gohir.A05G415901 Gossypium hirsutum HOM05D004741 ORTHO05D005454 2.0e-114 416.8 247 74.5
Gohir.A07G233600 Gossypium hirsutum HOM05D004741 ORTHO05D005454 7.5e-114 414.8 412 52.2
Cre02.g146950 Chlamydomonas reinhardtii HOM05D004741 ORTHO05D005454 1.4e-107 394.0 436 46.8
MCO02G476 Micromonas commoda HOM05D004741 ORTHO05D005454 1.1e-104 384.4 283 61.1
Dinv44899 Davidia involucrata HOM05D004741 ORTHO05D005454 5.9e-103 378.6 274 64.6
PRCOL_00004462 Prasinoderma coloniale HOM05D004741 ORTHO05D005454 1.2e-98 364.4 414 46.1
Gohir.A12G001100 Gossypium hirsutum HOM05D004741 ORTHO05D005454 2.6e-98 363.2 272 64.3
Nitab4.5_0000159g0030 Nicotiana tabacum HOM05D004741 ORTHO05D005454 2.2e-97 360.1 199 80.9
Gohir.A12G000500 Gossypium hirsutum HOM05D004741 ORTHO05D005454 1.1e-96 357.8 341 56.3
SGA_v2.0_scaffold24G10244 Striga asiatica HOM05D004741 ORTHO05D005454 3.1e-91 339.7 200 76.5
Gohir.A03G000005 Gossypium hirsutum HOM05D004741 ORTHO05D005454 5.1e-86 322.4 202 73.3
Gohir.A02G000050 Gossypium hirsutum HOM05D004741 ORTHO05D005454 4.7e-84 315.8 202 71.3
Gohir.A09G249600 Gossypium hirsutum HOM05D004741 ORTHO05D005454 3.1e-83 313.2 200 72.0
BcaB02g11404 Brassica carinata HOM05D004741 ORTHO05D005454 2.9e-81 306.6 167 82.0
Haze_27111 Corylus avellana HOM05D004741 ORTHO05D005454 1.3e-78 297.7 296 45.9
Cfa025655 Carpinus fangiana HOM05D004741 ORTHO05D005454 2.4e-75 287.0 404 40.1
PSO210G0837 Papaver somniferum HOM05D004741 ORTHO05D005454 2.4e-67 260.4 165 70.9
Gohir.1Z049489 Gossypium hirsutum HOM05D004741 ORTHO05D005454 2.4e-59 233.8 194 58.2
Gohir.1Z049306 Gossypium hirsutum HOM05D004741 ORTHO05D005454 3.1e-59 233.4 144 72.9
Gohir.1Z049408 Gossypium hirsutum HOM05D004741 ORTHO05D005454 3.1e-59 233.4 144 72.9
Gohir.1Z049565 Gossypium hirsutum HOM05D004741 ORTHO05D005454 3.1e-59 233.4 144 72.9
Gohir.1Z049424 Gossypium hirsutum HOM05D004741 ORTHO05D005454 3.4e-58 229.9 144 72.2
Gohir.A07G000083 Gossypium hirsutum HOM05D004741 ORTHO05D005454 6.0e-55 219.2 154 66.9
MD13G1228500 Malus domestica HOM05D004741 ORTHO05D005454 1.3e-52 211.5 119 79.8
AagrBONN_evm.TU.Sc2ySwM_369.559 Anthoceros agrestis HOM05D004741 ORTHO05D005454 1.4e-51 208.0 253 47.0
Gohir.A04G148266 Gossypium hirsutum HOM05D004741 ORTHO05D005454 2.7e-47 193.7 192 51.6
Gohir.A12G001050 Gossypium hirsutum HOM05D004741 ORTHO05D005454 1.3e-41 174.9 96 76.0
Lsat_1_v5_gn_9_90121 Lactuca sativa HOM05D000676 ORTHO05D001458 5.1e-38 162.9 108 69.4
Sopen07g006070 Solanum pennellii HOM05D004741 ORTHO05D005454 8.7e-38 162.2 86 82.6
ATR0582G232 Amborella trichopoda HOM05D004741 ORTHO05D005454 5.9e-34 149.4 100 65.0
Os03g0725300 Oryza sativa ssp. japonica HOM05D004741 ORTHO05D005454 2.2e-28 131.0 84 66.7
Gohir.D12G000832 Gossypium hirsutum HOM05D004741 ORTHO05D005454 4.5e-26 123.2 79 69.6
Gohir.A13G000900 Gossypium hirsutum HOM05D004741 ORTHO05D005454 8.8e-22 109.0 62 71.0
Gohir.A02G000100 Gossypium hirsutum HOM05D003958 ORTHO05D005454 3.2e-16 90.5 76 53.9
Gohir.A08G000024 Gossypium hirsutum HOM05D004741 ORTHO05D005454 1.4e-14 85.1 136 40.4
PSO541G5767 Papaver somniferum HOM05D001230 ORTHO05D001067 6.7e-14 82.8 57 64.9
CAN.G1057.23 Capsicum annuum HOM05D004741 ORTHO05D005454 1.7e-12 78.2 107 40.2
SalBow7G3287 Salvia bowleyana HOM05D004741 ORTHO05D005454 2.2e-12 77.8 43 72.1
Gohir.A13G000601 Gossypium hirsutum HOM05D004741 ORTHO05D005454 4.8e-12 76.6 55 61.8
Pp3c16_14300 Physcomitrium patens HOM05D005251 ORTHO05D006680 4.5e-10 70.1 245 26.9
Dinv44900 Davidia involucrata HOM05D004741 ORTHO05D005454 1.7e-09 68.2 66 57.6
Actinidia10255 Actinidia chinensis HOM05D004741 ORTHO05D005454 2.5e-08 64.3 38 73.7


User provided reference genes

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