Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN15G0171 Fragaria x ananassa HOM05D006408 ORTHO05D008038 7.5e-163 577.4 355 100.0
FAN27G1901 Fragaria x ananassa HOM05D006408 ORTHO05D008038 6.2e-141 504.6 253 97.2
FAN20G2488 Fragaria x ananassa HOM05D006408 ORTHO05D008038 1.5e-139 500.0 253 96.4
FAN24G2159 Fragaria x ananassa HOM05D006408 ORTHO05D008038 4.4e-139 498.4 252 96.4
RcHm_v2.0_Chr6g0296711 Rosa chinensis HOM05D006408 ORTHO05D008038 2.4e-132 476.1 253 90.5
FvH4_2g27850 Fragaria vesca HOM05D006408 ORTHO05D008038 2.2e-130 469.5 227 99.1
MD08G1159400 Malus domestica HOM05D006408 ORTHO05D008038 2.1e-128 463.0 253 89.3
Prupe.1G489500 Prunus persica HOM05D006408 ORTHO05D008038 2.7e-128 462.6 253 89.3
Cpa.g.sc26.317 Carica papaya HOM05D006408 ORTHO05D008038 3.2e-121 439.1 253 82.6
Cfa018129 Carpinus fangiana HOM05D006408 ORTHO05D008038 3.2e-121 439.1 253 83.0
CiPaw.16G022700 Carya illinoinensis HOM05D006408 ORTHO05D008038 3.9e-119 432.2 253 81.4
Gorai.005G087700 Gossypium raimondii HOM05D006408 ORTHO05D008038 8.7e-119 431.0 253 80.2
MELO3C010512.2 Cucumis melo HOM05D006408 ORTHO05D008038 1.1e-118 430.6 254 81.1
Thecc.08G133100 Theobroma cacao HOM05D006408 ORTHO05D008038 1.5e-118 430.3 253 81.8
Eucgr.A00239 Eucalyptus grandis HOM05D006408 ORTHO05D008038 1.9e-118 429.9 255 81.2
Aqoxy5G02393 Aquilegia oxysepala HOM05D006408 ORTHO05D008038 2.5e-118 429.5 254 80.3
Sp1g19130 Schrenkiella parvula HOM05D006408 ORTHO05D008038 2.5e-118 429.5 253 79.8
CsaV3_4G028270 Cucumis sativus L. HOM05D006408 ORTHO05D008038 4.3e-118 428.7 254 80.7
THA.LOC104814021 Tarenaya hassleriana HOM05D006408 ORTHO05D008038 5.6e-118 428.3 253 79.8
CANSAT25G1301 Cannabis sativa HOM05D006408 ORTHO05D008038 7.4e-118 427.9 254 80.3
ClCG11G015980 Citrullus lanatus HOM05D006408 ORTHO05D008038 9.6e-118 427.6 252 81.0
CARHR021960 Cardamine hirsuta HOM05D006408 ORTHO05D008038 3.7e-117 425.6 253 79.4
CSS0036755 Camellia sinensis var. sinensis HOM05D006408 ORTHO05D008038 1.8e-116 423.3 253 79.1
TAR628G0457 Trochodendron aralioides HOM05D006408 ORTHO05D008038 1.8e-116 423.3 253 78.7
AL1G34740 Arabidopsis lyrata HOM05D006408 ORTHO05D008038 2.4e-116 422.9 253 80.6
EL10Ac1g01346 Beta vulgaris HOM05D006408 ORTHO05D008038 6.9e-116 421.4 253 77.1
A06p17690 Brassica napus HOM05D006408 ORTHO05D008038 6.9e-116 421.4 253 80.6
BraA06t24861Z Brassica rapa HOM05D006408 ORTHO05D008038 6.9e-116 421.4 253 80.6
Sed0021255 Sechium edule HOM05D006408 ORTHO05D008038 6.9e-116 421.4 253 80.6
MBI03_g48069_MAGBIO Magnolia biondii HOM05D006408 ORTHO05D008038 9.0e-116 421.0 253 79.1
C05p20590 Brassica napus HOM05D006408 ORTHO05D008038 1.5e-115 420.2 253 80.6
BolC5t30757H Brassica oleracea HOM05D006408 ORTHO05D008038 1.5e-115 420.2 253 80.6
Glyma.04G087000 Glycine max HOM05D006408 ORTHO05D008038 1.5e-115 420.2 253 77.9
Phvul.009G129900 Phaseolus vulgaris HOM05D006408 ORTHO05D008038 2.6e-115 419.5 253 77.9
Potri.002G078900 Populus trichocarpa HOM05D006408 ORTHO05D008038 2.6e-115 419.5 253 75.9
PGR083G0137 Punica granatum HOM05D006408 ORTHO05D008038 2.6e-115 419.5 254 78.0
Manes.02G168400 Manihot esculenta HOM05D006408 ORTHO05D008038 4.5e-115 418.7 253 77.1
AT1G21600 Arabidopsis thaliana HOM05D006408 ORTHO05D008038 7.6e-115 417.9 253 79.1
Atru.chr13.1568 Acer truncatum HOM05D006408 ORTHO05D008038 1.0e-114 417.5 253 78.7
BcaC05g26077 Brassica carinata HOM05D006408 ORTHO05D008038 1.0e-114 417.5 253 80.2
Actinidia15213 Actinidia chinensis HOM05D006408 ORTHO05D008038 2.9e-114 416.0 253 78.7
Ca_16607_v3 Cicer arietinum L. HOM05D006408 ORTHO05D008038 2.9e-114 416.0 253 77.9
Peaxi162Scf00066g00222 Petunia axillaris HOM05D006408 ORTHO05D008038 2.9e-114 416.0 253 77.1
Sopen04g025710 Solanum pennellii HOM05D006408 ORTHO05D008038 3.8e-114 415.6 254 76.4
Nitab4.5_0001168g0170 Nicotiana tabacum HOM05D006408 ORTHO05D008038 6.5e-114 414.8 253 77.1
VMungo1309G0712 Vigna mungo HOM05D006408 ORTHO05D008038 6.5e-114 414.8 253 78.7
PGSC0003DMG400028061 Solanum tuberosum HOM05D006408 ORTHO05D008038 1.1e-113 414.1 254 76.0
Solyc04g057870.3 Solanum lycopersicum HOM05D006408 ORTHO05D008038 1.4e-113 413.7 254 76.0
PSO017G3385 Papaver somniferum HOM05D006408 ORTHO05D008038 2.5e-113 412.9 253 76.3
Aa31LG7G5580 Aethionema arabicum HOM05D006408 ORTHO05D008038 4.2e-113 412.1 274 73.0
PSO170G2303 Papaver somniferum HOM05D006408 ORTHO05D008038 4.2e-113 412.1 253 76.3
Hma1.2p1_1121F.1_g259280 Hydrangea macrophylla HOM05D006408 ORTHO05D008038 5.5e-113 411.8 253 76.7
Nn1g08961 Nelumbo nucifera HOM05D006408 ORTHO05D008038 5.5e-113 411.8 253 77.9
Cc10_g13760 Coffea canephora HOM05D006408 ORTHO05D008038 7.1e-113 411.4 253 77.1
Glyma.06G117500 Glycine max HOM05D006408 ORTHO05D008038 9.3e-113 411.0 253 77.1
Lalb_Chr08g0241101 Lupinus albus HOM05D006408 ORTHO05D008038 9.3e-113 411.0 253 75.9
Ciclev10001886m.g Citrus clementina HOM05D006408 ORTHO05D008038 1.2e-112 410.6 253 76.7
Gohir.D02G078200 Gossypium hirsutum HOM05D006408 ORTHO05D008038 6.1e-112 408.3 222 83.8
CAN.G288.5 Capsicum annuum HOM05D006408 ORTHO05D008038 7.9e-112 407.9 253 75.5
DCAR_003587 Daucus carota HOM05D006408 ORTHO05D008038 7.9e-112 407.9 253 75.1
Oeu047179.2 Olea europaea HOM05D006408 ORTHO05D008038 1.0e-111 407.5 228 81.6
MSTRG.22398 Avicennia marina HOM05D006408 ORTHO05D008038 6.7e-111 404.8 229 81.7
CDE06G0572 Ceratophyllum demersum HOM05D006408 ORTHO05D008038 8.7e-111 404.4 258 75.6
BcaB07g32155 Brassica carinata HOM05D006408 ORTHO05D008038 1.9e-110 403.3 225 83.1
Carub.0001s2103 Capsella rubella HOM05D006408 ORTHO05D008038 3.3e-110 402.5 225 82.7
GSVIVG01008807001 Vitis vinifera HOM05D006408 ORTHO05D008038 4.3e-110 402.1 222 83.8
Lj4A682G50 Lonicera japonica HOM05D006408 ORTHO05D008038 7.4e-110 401.4 249 76.3
Medtr3g088605 Medicago truncatula HOM05D006408 ORTHO05D008038 9.7e-110 401.0 253 75.1
ATR0568G086 Amborella trichopoda HOM05D006408 ORTHO05D008038 2.2e-109 399.8 253 75.1
unitig_52.g17545 Utricularia gibba HOM05D006408 ORTHO05D008038 3.7e-109 399.1 253 73.1
HanXRQChr02g0045521 Helianthus annuus HOM05D006408 ORTHO05D008038 1.1e-108 397.5 253 73.9
Psat5g084760 Pisum sativum HOM05D006408 ORTHO05D008038 1.1e-108 397.5 253 75.5
QL09p032485 Quercus lobata HOM05D006408 ORTHO05D008038 1.8e-108 396.7 223 83.4
Migut.N03260 Erythranthe guttata HOM05D006408 ORTHO05D008038 1.5e-107 393.7 228 79.4
arahy.Tifrunner.gnm1.ann1.227FW7 Arachis hypogaea HOM05D006408 ORTHO05D008038 1.3e-106 390.6 253 74.3
arahy.Tifrunner.gnm1.ann1.8X384Y Arachis hypogaea HOM05D006408 ORTHO05D008038 1.3e-106 390.6 253 74.7
HPP92_009911 Vanilla planifolia HOM05D006408 ORTHO05D008038 1.7e-106 390.2 253 71.5
ECA236G3303 Erigeron canadensis HOM05D006408 ORTHO05D008038 2.2e-106 389.8 251 72.9
TPR.G28811 Trifolium pratense HOM05D006408 ORTHO05D008038 2.2e-106 389.8 253 73.5
Lsat_1_v5_gn_1_7780 Lactuca sativa HOM05D006408 ORTHO05D008038 1.1e-105 387.5 245 73.9
CDE04G0676 Ceratophyllum demersum HOM05D006408 ORTHO05D008038 1.9e-105 386.7 245 75.5
Lj1g0002290 Lotus japonicus HOM05D006408 ORTHO05D008038 3.6e-104 382.5 220 80.0
BolC8t49731H Brassica oleracea HOM05D006408 ORTHO05D008038 2.5e-97 359.8 339 57.2
A08p28910 Brassica napus HOM05D006408 ORTHO05D008038 9.4e-97 357.8 206 81.1
Ah.10g032560 Amaranthus hybridus HOM05D006408 ORTHO05D008038 2.3e-95 353.2 253 68.0
Gohir.A02G071000 Gossypium hirsutum HOM05D006408 ORTHO05D008038 1.1e-94 350.9 222 74.3
Hund17341 Selenicereus undatus HOM05D006408 ORTHO05D008038 1.4e-92 344.0 213 76.1
Os11g0110100 Oryza sativa ssp. japonica HOM05D006408 ORTHO05D008038 2.0e-91 340.1 227 69.6
Os12g0110400 Oryza sativa ssp. japonica HOM05D006408 ORTHO05D008038 2.0e-91 340.1 227 69.6
Zm00001eb195160 Zea mays HOM05D006408 ORTHO05D008038 1.3e-90 337.4 257 62.6
SGA_v2.0_scaffold25G11139 Striga asiatica HOM05D006408 ORTHO05D008038 2.2e-85 320.1 288 57.6
Thhalv10007813m.g Eutrema salsugineum HOM05D006408 ORTHO05D008038 7.7e-83 311.6 184 79.9
Rhsim06G0091400 Rhododendron simsii HOM05D006408 ORTHO05D008038 2.5e-81 306.6 408 43.4
Nitab4.5_0003978g0010 Nicotiana tabacum HOM05D006408 ORTHO05D008038 4.2e-81 305.8 185 78.4
SEGI_15088 Sequoiadendron giganteum HOM05D006408 ORTHO05D008038 4.2e-81 305.8 220 62.7
AUR62007717 Chenopodium quinoa HOM05D006408 ORTHO05D008038 3.4e-78 296.2 253 58.5
AUR62013426 Chenopodium quinoa HOM05D006408 ORTHO05D008038 9.7e-78 294.7 253 58.1
Sc26g0002930 Simmondsia chinensis HOM05D006408 ORTHO05D008038 1.1e-76 291.2 185 74.1
C08p20930 Brassica napus HOM05D006408 ORTHO05D008038 4.1e-76 289.3 171 78.4
Mapoly0008s0219 Marchantia polymorpha HOM05D006408 ORTHO05D008038 8.5e-74 281.6 253 52.2
vmacro20822 Vaccinium macrocarpon HOM05D006408 ORTHO05D008038 1.6e-72 277.3 167 77.2
Duzib093G1884 Durio zibethinus HOM05D006408 ORTHO05D008038 1.0e-71 274.6 224 62.1
Pp3c1_1000 Physcomitrium patens HOM05D006408 ORTHO05D008038 7.5e-70 268.5 253 53.0
CsaV3_5G019980 Cucumis sativus L. HOM05D006408 ORTHO05D008038 9.8e-62 241.5 211 56.9
COL.COLO4_06961 Corchorus olitorius HOM05D006408 ORTHO05D008038 1.3e-61 241.1 145 81.4
BraA08t34821Z Brassica rapa HOM05D006408 ORTHO05D008038 1.7e-61 240.7 144 77.8
CsaV3_UNG224650 Cucumis sativus L. HOM05D006408 ORTHO05D008038 2.7e-59 233.4 204 58.3
SMO146G0302 Selaginella moellendorffii HOM05D006408 ORTHO05D008038 7.8e-59 231.9 205 53.7
MBI03_g28486_MAGBIO Magnolia biondii HOM05D006408 ORTHO05D008038 9.5e-57 224.9 248 52.4
SalBow2G2951 Salvia bowleyana HOM05D006408 ORTHO05D008038 6.8e-55 218.8 119 83.2
MBI03_g39652_MAGBIO Magnolia biondii HOM05D006408 ORTHO05D008038 3.4e-46 189.9 157 63.1
Dinv14691 Davidia involucrata HOM05D006408 ORTHO05D008038 1.6e-43 181.0 109 78.9
Sabra02G0061800 Salix brachista HOM05D006408 ORTHO05D008038 3.1e-39 166.8 97 77.3
Aqoxy219s001 Aquilegia oxysepala HOM05D006408 ORTHO05D008038 1.4e-36 157.9 109 69.7
CBR_g40143 Chara braunii HOM05D006408 ORTHO05D008038 3.6e-32 143.3 175 40.0
CsaV3_5G018920 Cucumis sativus L. HOM05D006408 ORTHO05D008038 3.8e-29 133.3 155 48.4
BolC5t30909H Brassica oleracea HOM05D006408 ORTHO05D008038 3.9e-26 123.2 62 88.7
Actinidia21278 Actinidia chinensis HOM05D006408 ORTHO05D008038 2.2e-21 107.5 105 53.3
AagrBONN_evm.TU.Sc2ySwM_344.4901 Anthoceros agrestis HOM05D006408 ORTHO05D008038 6.4e-21 105.9 78 65.4
MBI14_g28586_MAGBIO Magnolia biondii HOM05D007982 ORTHO05D010255 7.6e-14 82.4 43 88.4
CsaV3_UNG111870 Cucumis sativus L. HOM05D006408 ORTHO05D008038 6.7e-10 69.3 68 54.4
CsaV3_UNG115880 Cucumis sativus L. HOM05D006408 ORTHO05D008038 6.7e-10 69.3 68 54.4


User provided reference genes

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