Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FvH4_6g34660 Fragaria vesca HOM05D006077 ORTHO05D007499 5.7e-49 197.2 96 100.0
FAN14G4463 Fragaria x ananassa HOM05D006077 ORTHO05D007499 5.7e-49 197.2 96 100.0
RcHm_v2.0_Chr2g0145211 Rosa chinensis HOM05D006077 ORTHO05D007499 4.8e-48 194.1 96 97.9
FAN09G3570 Fragaria x ananassa HOM05D006077 ORTHO05D007499 1.8e-47 192.2 96 97.9
RcHm_v2.0_Chr5g0053491 Rosa chinensis HOM05D006077 ORTHO05D007499 5.9e-46 187.2 96 95.8
Thecc.06G119600 Theobroma cacao HOM05D006077 ORTHO05D007499 2.9e-45 184.9 94 92.6
GSVIVG01016766001 Vitis vinifera HOM05D006077 ORTHO05D007499 6.6e-45 183.7 94 91.5
Prupe.3G042200 Prunus persica HOM05D006077 ORTHO05D007499 1.5e-44 182.6 96 90.6
RcHm_v2.0_Chr3g0490611 Rosa chinensis HOM05D006077 ORTHO05D007499 1.9e-44 182.2 96 92.7
CANSAT64G0122 Cannabis sativa HOM05D006077 ORTHO05D007499 2.5e-44 181.8 95 89.5
CANSAT64G2602 Cannabis sativa HOM05D006077 ORTHO05D007499 2.5e-44 181.8 92 92.4
PSO421G0038 Papaver somniferum HOM05D006077 ORTHO05D007499 4.2e-44 181.0 94 91.5
CDE11G1182 Ceratophyllum demersum HOM05D006077 ORTHO05D007499 7.2e-44 180.3 95 87.4
ECA232G1087 Erigeron canadensis HOM05D006077 ORTHO05D007499 9.5e-44 179.9 96 88.5
Lj3g0010947 Lotus japonicus HOM05D006077 ORTHO05D007499 1.2e-43 179.5 94 88.3
MD09G1183900 Malus domestica HOM05D006077 ORTHO05D007499 1.2e-43 179.5 96 88.5
TAR636G2213 Trochodendron aralioides HOM05D006077 ORTHO05D007499 1.2e-43 179.5 94 90.4
Gohir.D04G009800 Gossypium hirsutum HOM05D006077 ORTHO05D007499 1.6e-43 179.1 94 90.4
Gorai.012G011600 Gossypium raimondii HOM05D006077 ORTHO05D007499 1.6e-43 179.1 94 90.4
CSS0011852 Camellia sinensis var. sinensis HOM05D006077 ORTHO05D007499 2.8e-43 178.3 94 89.4
CiPaw.02G136000 Carya illinoinensis HOM05D006077 ORTHO05D007499 2.8e-43 178.3 95 86.3
Glyma.16G007300 Glycine max HOM05D006077 ORTHO05D007499 2.8e-43 178.3 94 88.3
Haze_16030 Corylus avellana HOM05D006077 ORTHO05D007499 4.7e-43 177.6 94 88.3
FAN05G2137 Fragaria x ananassa HOM05D006077 ORTHO05D007499 4.7e-43 177.6 123 76.4
Lalb_Chr01g0013591 Lupinus albus HOM05D006077 ORTHO05D007499 4.7e-43 177.6 94 88.3
Phvul.010G130300 Phaseolus vulgaris HOM05D006077 ORTHO05D007499 4.7e-43 177.6 94 89.4
Gohir.A05G405800 Gossypium hirsutum HOM05D006077 ORTHO05D007499 6.1e-43 177.2 94 89.4
Psat4g182400 Pisum sativum HOM05D006077 ORTHO05D007499 6.1e-43 177.2 94 88.3
TWI75G1673 Tripterygium wilfordii HOM05D006077 ORTHO05D007499 8.0e-43 176.8 94 89.4
Actinidia26028 Actinidia chinensis HOM05D006077 ORTHO05D007499 1.0e-42 176.4 94 88.3
Dinv37869 Davidia involucrata HOM05D006077 ORTHO05D007499 1.0e-42 176.4 94 88.3
PSO063G4040 Papaver somniferum HOM05D006077 ORTHO05D007499 1.0e-42 176.4 94 89.4
TPR.G32491 Trifolium pratense HOM05D006077 ORTHO05D007499 1.0e-42 176.4 94 87.2
Aqoxy7G01092 Aquilegia oxysepala HOM05D006077 ORTHO05D007499 1.8e-42 175.6 94 88.3
VMungo0331G1077 Vigna mungo HOM05D006077 ORTHO05D007499 1.8e-42 175.6 94 87.2
Carub.0001s4344 Capsella rubella HOM05D006077 ORTHO05D007499 2.3e-42 175.3 94 87.2
Glyma.07G038100 Glycine max HOM05D006077 ORTHO05D007499 2.3e-42 175.3 94 87.2
TWI79G1574 Tripterygium wilfordii HOM05D006077 ORTHO05D007499 2.3e-42 175.3 94 89.4
Sc15g0000510 Simmondsia chinensis HOM05D006077 ORTHO05D007499 5.2e-42 174.1 94 87.2
ATR0598G320 Amborella trichopoda HOM05D006077 ORTHO05D007499 6.8e-42 173.7 94 87.2
CAN.G1368.2 Capsicum annuum HOM05D006077 ORTHO05D007499 8.9e-42 173.3 87 92.0
CiPaw.01G218900 Carya illinoinensis HOM05D006077 ORTHO05D007499 8.9e-42 173.3 96 87.5
Rhsim08G0238900 Rhododendron simsii HOM05D006077 ORTHO05D007499 8.9e-42 173.3 94 87.2
THA.LOC104822655 Tarenaya hassleriana HOM05D006077 ORTHO05D007499 1.5e-41 172.6 94 87.2
AT1G54210 Arabidopsis thaliana HOM05D006077 ORTHO05D007499 2.6e-41 171.8 95 84.2
Hma1.2p1_0291F.1_g115130 Hydrangea macrophylla HOM05D006077 ORTHO05D007499 4.4e-41 171.0 96 85.4
arahy.Tifrunner.gnm1.ann1.G5XP6S Arachis hypogaea HOM05D006077 ORTHO05D007499 5.7e-41 170.6 94 84.0
arahy.Tifrunner.gnm1.ann1.G7AU8E Arachis hypogaea HOM05D006077 ORTHO05D007499 5.7e-41 170.6 94 84.0
CARHR044580 Cardamine hirsuta HOM05D006077 ORTHO05D007499 5.7e-41 170.6 94 86.2
Hund05739 Selenicereus undatus HOM05D006077 ORTHO05D007499 5.7e-41 170.6 94 86.2
Solyc12g049310.2 Solanum lycopersicum HOM05D006077 ORTHO05D007499 7.5e-41 170.2 87 90.8
Sopen12g023790 Solanum pennellii HOM05D006077 ORTHO05D007499 7.5e-41 170.2 87 90.8
BcaB07g33246 Brassica carinata HOM05D006077 ORTHO05D007499 9.8e-41 169.9 94 86.2
Migut.D00939 Erythranthe guttata HOM05D006077 ORTHO05D007499 9.8e-41 169.9 86 93.0
Thhalv10011896m.g Eutrema salsugineum HOM05D006077 ORTHO05D007499 1.3e-40 169.5 94 86.2
Peaxi162Scf00177g00511 Petunia axillaris HOM05D006077 ORTHO05D007499 1.7e-40 169.1 87 90.8
Ah.08g216780 Amaranthus hybridus HOM05D006077 ORTHO05D007499 2.2e-40 168.7 94 84.0
Lsat_1_v5_gn_4_92920 Lactuca sativa HOM05D006077 ORTHO05D007499 2.8e-40 168.3 94 84.0
Manes.11G020500 Manihot esculenta HOM05D006077 ORTHO05D007499 2.8e-40 168.3 95 81.1
BolC5t34043H Brassica oleracea HOM05D006077 ORTHO05D007499 3.7e-40 167.9 96 82.3
Sp3g12220 Schrenkiella parvula HOM05D006077 ORTHO05D007499 4.9e-40 167.5 94 83.0
AL1G62920 Arabidopsis lyrata HOM05D006077 ORTHO05D007499 6.3e-40 167.2 93 84.9
Medtr8g020500 Medicago truncatula HOM05D006077 ORTHO05D007499 6.3e-40 167.2 84 92.9
AL3G26170 Arabidopsis lyrata HOM05D006077 ORTHO05D007499 8.3e-40 166.8 94 83.0
Eucgr.F03177 Eucalyptus grandis HOM05D006077 ORTHO05D007499 1.1e-39 166.4 94 83.0
Carub.0003s1355 Capsella rubella HOM05D006077 ORTHO05D007499 1.4e-39 166.0 96 81.2
BcaC05g29136 Brassica carinata HOM05D006077 ORTHO05D007499 1.8e-39 165.6 94 83.0
C05p53730 Brassica napus HOM05D006077 ORTHO05D007499 1.8e-39 165.6 94 83.0
Cc00_g21000 Coffea canephora HOM05D006077 ORTHO05D007499 1.8e-39 165.6 86 89.5
Ciclev10026605m.g Citrus clementina HOM05D006077 ORTHO05D007499 2.4e-39 165.2 96 80.2
Hma1.2p1_0496F.1_g166240 Hydrangea macrophylla HOM05D006077 ORTHO05D007499 2.4e-39 165.2 83 91.6
SalBow6G4082 Salvia bowleyana HOM05D006077 ORTHO05D007499 2.4e-39 165.2 86 90.7
SalBow6G4389 Salvia bowleyana HOM05D006077 ORTHO05D007499 2.4e-39 165.2 86 90.7
A06p00460 Brassica napus HOM05D006077 ORTHO05D007499 4.1e-39 164.5 104 78.8
MELO3C025809.2 Cucumis melo HOM05D006077 ORTHO05D007499 5.4e-39 164.1 96 80.2
BcaB06g25414 Brassica carinata HOM05D006077 ORTHO05D007499 7.0e-39 163.7 94 80.9
BolC6t36071H Brassica oleracea HOM05D006077 ORTHO05D007499 1.2e-38 162.9 96 83.3
BraA06t23260Z Brassica rapa HOM05D006077 ORTHO05D007499 1.2e-38 162.9 96 83.3
ClCG07G014030 Citrullus lanatus HOM05D006077 ORTHO05D007499 1.6e-38 162.5 96 79.2
CsaV3_3G043520 Cucumis sativus L. HOM05D006077 ORTHO05D007499 1.6e-38 162.5 96 79.2
Sed0008411 Sechium edule HOM05D006077 ORTHO05D007499 1.0e-37 159.8 96 79.2
Aa31LG8G1170 Aethionema arabicum HOM05D006077 ORTHO05D007499 1.3e-37 159.5 102 78.4
BcaB07g33245 Brassica carinata HOM05D006077 ORTHO05D007499 1.7e-37 159.1 84 90.5
BcaC08g43600 Brassica carinata HOM05D006077 ORTHO05D007499 1.7e-37 159.1 84 90.5
A05p35440 Brassica napus HOM05D006077 ORTHO05D007499 1.7e-37 159.1 94 80.9
C06p09980 Brassica napus HOM05D006077 ORTHO05D007499 1.7e-37 159.1 84 90.5
SalBow6G7202 Salvia bowleyana HOM05D006077 ORTHO05D007499 6.6e-37 157.1 93 83.9
Potri.001G169700 Populus trichocarpa HOM05D006077 ORTHO05D007499 8.6e-37 156.8 92 78.3
Nn4g24846 Nelumbo nucifera HOM05D006077 ORTHO05D007499 1.5e-36 156.0 85 87.1
BraA05t22354Z Brassica rapa HOM05D006077 ORTHO05D007499 2.5e-36 155.2 84 88.1
Sed0025034 Sechium edule HOM05D006077 ORTHO05D007499 5.6e-36 154.1 96 76.0
Zm00001eb256700 Zea mays HOM05D006077 ORTHO05D007499 5.6e-36 154.1 88 81.8
Mapoly0025s0134 Marchantia polymorpha HOM05D006077 ORTHO05D007499 9.5e-36 153.3 93 78.5
Potri.003G064300 Populus trichocarpa HOM05D006077 ORTHO05D007499 9.5e-36 153.3 94 75.5
Pp3c4_29920 Physcomitrium patens HOM05D006077 ORTHO05D007499 2.1e-35 152.1 97 74.2
AagrBONN_evm.TU.Sc2ySwM_228.485 Anthoceros agrestis HOM05D006077 ORTHO05D007499 3.6e-35 151.4 96 75.0
Os06g0205000 Oryza sativa ssp. japonica HOM05D006077 ORTHO05D007499 5.2e-34 147.5 86 76.7
FAN02G4125 Fragaria x ananassa HOM05D006077 ORTHO05D007499 1.1e-31 139.8 100 75.0
CANSAT25G1718 Cannabis sativa HOM05D006077 ORTHO05D007499 3.2e-31 138.3 75 86.7
Manes.04G144301 Manihot esculenta HOM05D006077 ORTHO05D007499 4.1e-31 137.9 81 77.8
unitig_699.g19648 Utricularia gibba HOM05D002868 ORTHO05D003477 4.1e-31 137.9 75 85.3
QL05p007703 Quercus lobata HOM05D006077 ORTHO05D007499 9.2e-31 136.7 64 96.9
COL.COLO4_30761 Corchorus olitorius HOM05D006077 ORTHO05D007499 1.2e-30 136.3 74 86.5
vmacro15032 Vaccinium macrocarpon HOM05D006077 ORTHO05D007499 2.0e-30 135.6 78 85.9
Duzib235G0120 Durio zibethinus HOM05D006077 ORTHO05D007499 4.6e-30 134.4 74 86.5
Duzib192G0164 Durio zibethinus HOM05D006077 ORTHO05D007499 1.5e-28 129.4 74 82.4
EL10Ac7g16407 Beta vulgaris HOM05D006077 ORTHO05D007499 1.9e-28 129.0 74 81.1
RcHm_v2.0_Chr5g0040601 Rosa chinensis HOM05D006077 ORTHO05D007499 1.9e-28 129.0 71 84.5
SGA_v2.0_scaffold4G02063 Striga asiatica HOM05D006077 ORTHO05D007499 1.9e-28 129.0 83 75.9
Oeu015484.1 Olea europaea HOM05D006077 ORTHO05D007499 1.2e-27 126.3 66 90.9
CARHR088790 Cardamine hirsuta HOM05D006077 ORTHO05D007499 4.7e-27 124.4 74 79.7
AUR62009882 Chenopodium quinoa HOM05D006077 ORTHO05D007499 5.2e-26 120.9 67 82.1
CBR_g34185 Chara braunii HOM05D000019 ORTHO05D001702 5.8e-25 117.5 73 74.0
Nitab4.5_0000189g0210 Nicotiana tabacum HOM05D006077 ORTHO05D007499 7.5e-25 117.1 87 67.8
Nitab4.5_0001199g0100 Nicotiana tabacum HOM05D006077 ORTHO05D007499 7.5e-25 117.1 87 67.8
HPP92_019155 Vanilla planifolia HOM05D006077 ORTHO05D007499 9.8e-25 116.7 66 81.8
Thhalv10021863m.g Eutrema salsugineum HOM05D006077 ORTHO05D007499 1.7e-24 115.9 94 62.8
Sabra03G0038000 Salix brachista HOM05D006077 ORTHO05D007499 2.2e-24 115.5 74 71.6
SMO364G0450 Selaginella moellendorffii HOM05D006077 ORTHO05D007499 1.9e-20 102.4 86 54.7
PRCOL_00003774 Prasinoderma coloniale HOM05D006077 ORTHO05D007499 5.6e-20 100.9 85 52.9
MCO16G375 Micromonas commoda HOM05D006077 ORTHO05D007499 2.8e-19 98.6 90 57.8
CDE05G1235 Ceratophyllum demersum HOM05D006077 ORTHO05D007499 5.2e-18 94.4 60 76.7
CSS0028385 Camellia sinensis var. sinensis HOM05D006077 ORTHO05D007499 1.5e-17 92.8 53 83.0
PGSC0003DMG400011604 Solanum tuberosum HOM05D006077 ORTHO05D007499 2.0e-17 92.4 45 91.1
AT3G13970 Arabidopsis thaliana HOM05D006077 ORTHO05D007499 4.1e-15 84.7 55 69.1
Cre12.g557000 Chlamydomonas reinhardtii HOM05D006077 ORTHO05D007499 6.0e-14 80.9 86 46.5
DCAR_022696 Daucus carota HOM05D006077 ORTHO05D007499 1.0e-13 80.1 43 86.0
Atru.chr1.3943 Acer truncatum HOM05D006077 ORTHO05D007499 1.9e-12 75.9 78 55.1
FAN24G1797 Fragaria x ananassa HOM05D006077 ORTHO05D007499 3.1e-10 68.6 39 84.6
FAN20G2981 Fragaria x ananassa HOM05D006077 ORTHO05D007499 5.4e-07 57.8 33 84.8
Aa31LG10G1230 Aethionema arabicum HOM05D006077 ORTHO05D007499 1.6e-06 56.2 98 38.8
Aa31sc1971G10 Aethionema arabicum HOM05D006077 ORTHO05D007499 2.1e-06 55.8 98 38.8


User provided reference genes

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