Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN14G1908 Fragaria x ananassa HOM05D003353 ORTHO05D003751 3.0e-48 194.9 101 100.0
FAN02G2799 Fragaria x ananassa HOM05D003353 ORTHO05D003751 3.9e-48 194.5 101 99.0
FAN09G4608 Fragaria x ananassa HOM05D003353 ORTHO05D003751 3.9e-48 194.5 101 99.0
FvH4_6g50560 Fragaria vesca HOM05D003353 ORTHO05D003751 1.1e-45 186.4 101 95.0
FAN14G4206 Fragaria x ananassa HOM05D003353 ORTHO05D003751 1.1e-45 186.4 101 95.0
RcHm_v2.0_Chr2g0171081 Rosa chinensis HOM05D003353 ORTHO05D003751 5.8e-44 180.6 101 92.1
Prupe.3G283100 Prunus persica HOM05D003353 ORTHO05D003751 2.9e-35 151.8 101 74.3
CANSAT64G0328 Cannabis sativa HOM05D003353 ORTHO05D003751 2.3e-32 142.1 101 70.3
MD09G1035200 Malus domestica HOM05D003353 ORTHO05D003751 5.1e-32 141.0 101 72.3
MD17G1035500 Malus domestica HOM05D003353 ORTHO05D003751 2.2e-30 135.6 101 68.3
Haze_14661 Corylus avellana HOM05D003353 ORTHO05D003751 6.3e-30 134.0 101 70.3
CiPaw.03G037100 Carya illinoinensis HOM05D003353 ORTHO05D003751 1.1e-29 133.3 101 68.3
Potri.017G072460 Populus trichocarpa HOM05D003353 ORTHO05D003751 1.1e-29 133.3 99 65.7
Manes.15G182800 Manihot esculenta HOM05D003353 ORTHO05D003751 1.4e-29 132.9 101 69.3
QL02p076799 Quercus lobata HOM05D003353 ORTHO05D003751 1.4e-29 132.9 100 67.0
Duzib147G1510 Durio zibethinus HOM05D003353 ORTHO05D003751 3.1e-29 131.7 101 71.3
Cfa007435 Carpinus fangiana HOM05D003353 ORTHO05D003751 9.0e-29 130.2 101 69.3
Sabra17G0060500 Salix brachista HOM05D003353 ORTHO05D003751 1.2e-28 129.8 99 63.6
Thecc.04G008000 Theobroma cacao HOM05D003353 ORTHO05D003751 2.0e-28 129.0 101 68.3
TWI12G0214 Tripterygium wilfordii HOM05D003353 ORTHO05D003751 4.5e-28 127.9 101 65.3
COL.COLO4_28936 Corchorus olitorius HOM05D003353 ORTHO05D003751 5.9e-28 127.5 99 68.7
Lalb_Chr02g0160241 Lupinus albus HOM05D003353 ORTHO05D003751 5.9e-28 127.5 101 64.4
ClCG10G014330 Citrullus lanatus HOM05D003353 ORTHO05D003751 7.7e-28 127.1 101 67.3
Cpa.g.sc215.4 Carica papaya HOM05D003353 ORTHO05D003751 1.7e-27 125.9 101 65.3
Ciclev10014026m.g Citrus clementina HOM05D003353 ORTHO05D003751 1.7e-27 125.9 101 65.3
GSVIVG01032492001 Vitis vinifera HOM05D003353 ORTHO05D003751 2.9e-27 125.2 99 66.7
TWI36G0997 Tripterygium wilfordii HOM05D003353 ORTHO05D003751 3.8e-27 124.8 101 63.4
MELO3C009946.2 Cucumis melo HOM05D003353 ORTHO05D003751 1.4e-26 122.9 101 66.3
Dinv35053 Davidia involucrata HOM05D003353 ORTHO05D003751 1.4e-26 122.9 101 68.3
Psat1g059480 Pisum sativum HOM05D003353 ORTHO05D003751 1.9e-26 122.5 101 62.4
Lalb_Chr06g0176091 Lupinus albus HOM05D003353 ORTHO05D003751 3.2e-26 121.7 101 63.4
THA.LOC104822384 Tarenaya hassleriana HOM05D003353 ORTHO05D003751 4.2e-26 121.3 101 64.4
Aa31LG5G10560 Aethionema arabicum HOM05D003353 ORTHO05D003751 5.5e-26 120.9 102 63.7
Lj2g0012220 Lotus japonicus HOM05D003353 ORTHO05D003751 5.5e-26 120.9 101 64.4
Gohir.D09G025300 Gossypium hirsutum HOM05D003353 ORTHO05D003751 7.2e-26 120.6 101 65.3
CsaV3_3G042270 Cucumis sativus L. HOM05D003353 ORTHO05D003751 1.2e-25 119.8 102 64.7
AL3G10710 Arabidopsis lyrata HOM05D003353 ORTHO05D003751 2.1e-25 119.0 102 62.7
Carub.0003s0064 Capsella rubella HOM05D003353 ORTHO05D003751 2.1e-25 119.0 101 62.4
Lalb_Chr21g0319411 Lupinus albus HOM05D003353 ORTHO05D003751 2.1e-25 119.0 101 60.4
Atru.chr6.2192 Acer truncatum HOM05D003353 ORTHO05D003751 4.6e-25 117.9 101 60.4
Gorai.006G029600 Gossypium raimondii HOM05D003353 ORTHO05D003751 4.6e-25 117.9 101 64.4
Thhalv10019872m.g Eutrema salsugineum HOM05D003353 ORTHO05D003751 6.1e-25 117.5 101 61.4
Phvul.004G017600 Phaseolus vulgaris HOM05D003353 ORTHO05D003751 6.1e-25 117.5 101 63.4
VMungo0464G0152 Vigna mungo HOM05D003353 ORTHO05D003751 7.9e-25 117.1 101 63.4
Gohir.A09G026000 Gossypium hirsutum HOM05D003353 ORTHO05D003751 1.0e-24 116.7 101 63.4
arahy.Tifrunner.gnm1.ann1.50RNEG Arachis hypogaea HOM05D003353 ORTHO05D003751 1.4e-24 116.3 101 63.4
Glyma.13G170000 Glycine max HOM05D003353 ORTHO05D003751 1.8e-24 115.9 101 62.4
Eucgr.I01818 Eucalyptus grandis HOM05D003353 ORTHO05D003751 2.3e-24 115.5 101 63.4
PGR142G1415 Punica granatum HOM05D003353 ORTHO05D003751 2.3e-24 115.5 101 56.4
Sed0022584 Sechium edule HOM05D003353 ORTHO05D003751 3.0e-24 115.2 104 62.5
CARHR075500 Cardamine hirsuta HOM05D003353 ORTHO05D003751 3.9e-24 114.8 100 61.0
arahy.Tifrunner.gnm1.ann1.S45US4 Arachis hypogaea HOM05D003353 ORTHO05D003751 5.1e-24 114.4 101 62.4
Glyma.19G010200 Glycine max HOM05D003353 ORTHO05D003751 8.8e-24 113.6 99 60.6
BraA01t04666Z Brassica rapa HOM05D003353 ORTHO05D003751 1.1e-23 113.2 101 57.4
Sp3g00610 Schrenkiella parvula HOM05D003353 ORTHO05D003751 1.1e-23 113.2 101 56.4
BcaB04g21418 Brassica carinata HOM05D003353 ORTHO05D003751 2.0e-23 112.5 101 56.4
A05p44550 Brassica napus HOM05D003353 ORTHO05D003751 2.0e-23 112.5 101 59.4
BraA05t23202Z Brassica rapa HOM05D003353 ORTHO05D003751 2.0e-23 112.5 101 59.4
Hund12469 Selenicereus undatus HOM05D003353 ORTHO05D003751 5.7e-23 110.9 99 60.6
BcaC09g47659 Brassica carinata HOM05D003353 ORTHO05D003751 1.7e-22 109.4 101 56.4
BolC1t05958H Brassica oleracea HOM05D003353 ORTHO05D003751 1.7e-22 109.4 101 56.4
Medtr6g007650 Medicago truncatula HOM05D003353 ORTHO05D003751 1.7e-22 109.4 101 57.4
AUR62032109 Chenopodium quinoa HOM05D003353 ORTHO05D003751 2.2e-22 109.0 101 56.4
AUR62042408 Chenopodium quinoa HOM05D003353 ORTHO05D003751 2.2e-22 109.0 101 57.4
TPR.G2281 Trifolium pratense HOM05D003353 ORTHO05D003751 2.2e-22 109.0 98 58.2
Ah.16g106640 Amaranthus hybridus HOM05D003353 ORTHO05D003751 8.2e-22 107.1 101 56.4
Actinidia06029 Actinidia chinensis HOM05D003353 ORTHO05D003751 1.5e-20 102.8 95 57.9
EL10Ac2g03352 Beta vulgaris HOM05D003353 ORTHO05D003751 2.0e-20 102.4 99 55.6
C09p75140 Brassica napus HOM05D003353 ORTHO05D003751 2.6e-20 102.1 100 55.0
BolC5t35150H Brassica oleracea HOM05D003353 ORTHO05D003751 2.6e-20 102.1 100 55.0
Hma1.2p1_0802F.1_g220440 Hydrangea macrophylla HOM05D003353 ORTHO05D003751 2.6e-20 102.1 101 60.4
Lj7A591T75 Lonicera japonica HOM05D003353 ORTHO05D003751 8.5e-19 97.1 94 58.5
AT3G01460 Arabidopsis thaliana HOM05D003353 ORTHO05D003751 1.4e-18 96.3 101 52.5
Nn3g16906 Nelumbo nucifera HOM05D003353 ORTHO05D003751 3.2e-18 95.1 69 68.1
Atru.chr11.2012 Acer truncatum HOM05D003353 ORTHO05D003751 4.2e-18 94.7 97 55.7
Nn4g22812 Nelumbo nucifera HOM05D003353 ORTHO05D003751 5.5e-18 94.4 101 49.5
TAR371G0580 Trochodendron aralioides HOM05D003353 ORTHO05D003751 5.5e-18 94.4 101 55.4
Cc11_g14600 Coffea canephora HOM05D003353 ORTHO05D003751 7.2e-18 94.0 116 50.9
vmacro05816 Vaccinium macrocarpon HOM05D003353 ORTHO05D003751 7.2e-18 94.0 98 55.1
ATR0691G050 Amborella trichopoda HOM05D003353 ORTHO05D003751 9.4e-18 93.6 101 53.5
TAR629G0276 Trochodendron aralioides HOM05D003353 ORTHO05D003751 9.4e-18 93.6 63 71.4
Aqoxy3G02993 Aquilegia oxysepala HOM05D003353 ORTHO05D003751 1.2e-17 93.2 60 75.0
Actinidia15042 Actinidia chinensis HOM05D003353 ORTHO05D003751 1.6e-17 92.8 118 47.5
Manes.12G029600 Manihot esculenta HOM05D003353 ORTHO05D003751 2.1e-17 92.4 90 55.6
Sc06g0000060 Simmondsia chinensis HOM05D003353 ORTHO05D003751 3.6e-17 91.7 97 54.6
Sc06g0001590 Simmondsia chinensis HOM05D003353 ORTHO05D003751 3.6e-17 91.7 97 54.6
Dinv15308 Davidia involucrata HOM05D003353 ORTHO05D003751 6.1e-17 90.9 120 45.8
Ciclev10030471m.g Citrus clementina HOM05D003353 ORTHO05D003751 7.9e-17 90.5 93 54.8
Lsat_1_v5_gn_8_157680 Lactuca sativa HOM05D003353 ORTHO05D003751 1.0e-16 90.1 95 55.8
Peaxi162Scf00338g00002 Petunia axillaris HOM05D003353 ORTHO05D003751 1.0e-16 90.1 112 47.3
Sopen05g001650 Solanum pennellii HOM05D003353 ORTHO05D003751 1.0e-16 90.1 71 62.0
CDE10G0339 Ceratophyllum demersum HOM05D003353 ORTHO05D003751 1.8e-16 89.4 70 62.9
CSS0016548 Camellia sinensis var. sinensis HOM05D003353 ORTHO05D003751 2.3e-16 89.0 88 52.3
PSO063G6215 Papaver somniferum HOM05D003353 ORTHO05D003751 2.3e-16 89.0 100 50.0
Rhsim10G0023100 Rhododendron simsii HOM05D003353 ORTHO05D003751 2.3e-16 89.0 97 49.5
Nitab4.5_0000113g0210 Nicotiana tabacum HOM05D003353 ORTHO05D003751 3.0e-16 88.6 115 48.7
Nitab4.5_0002579g0080 Nicotiana tabacum HOM05D003353 ORTHO05D003751 3.9e-16 88.2 111 48.6
GSVIVG01020232001 Vitis vinifera HOM05D003353 ORTHO05D003751 3.9e-16 88.2 117 47.9
DCAR_031098 Daucus carota HOM05D003353 ORTHO05D003751 8.8e-16 87.0 60 68.3
Migut.L01407 Erythranthe guttata HOM05D003353 ORTHO05D003751 1.1e-15 86.7 115 44.3
SGA_v2.0_scaffold165G38252 Striga asiatica HOM05D003353 ORTHO05D003751 1.1e-15 86.7 106 48.1
MSTRG.7892 Avicennia marina HOM05D003353 ORTHO05D003751 1.5e-15 86.3 68 63.2
Actinidia13514 Actinidia chinensis HOM05D003353 ORTHO05D003751 2.0e-15 85.9 99 47.5
CSS0024289 Camellia sinensis var. sinensis HOM05D003353 ORTHO05D003751 2.0e-15 85.9 109 46.8
CAN.G1420.2 Capsicum annuum HOM05D003353 ORTHO05D003751 2.6e-15 85.5 104 49.0
Lsat_1_v5_gn_4_6960 Lactuca sativa HOM05D003353 ORTHO05D003751 2.6e-15 85.5 90 51.1
PSO832G1186 Papaver somniferum HOM05D003353 ORTHO05D003751 2.6e-15 85.5 100 49.0
Dinv24865 Davidia involucrata HOM05D003353 ORTHO05D003751 3.3e-15 85.1 86 51.2
HanXRQChr12g0368561 Helianthus annuus HOM05D003353 ORTHO05D003751 4.4e-15 84.7 87 51.7
Cfa009137 Carpinus fangiana HOM05D003353 ORTHO05D003751 5.7e-15 84.3 94 53.2
ECA233G2073 Erigeron canadensis HOM05D003353 ORTHO05D003751 5.7e-15 84.3 92 54.3
ECA199G0003 Erigeron canadensis HOM05D003353 ORTHO05D003751 7.4e-15 84.0 90 52.2
Lj6C805G5 Lonicera japonica HOM05D003353 ORTHO05D003751 1.7e-14 82.8 116 44.8
SEGI_35053 Sequoiadendron giganteum HOM05D003353 ORTHO05D003751 2.2e-14 82.4 63 61.9
Haze_12169 Corylus avellana HOM05D003353 ORTHO05D003751 2.8e-14 82.0 96 52.1
Rhsim12G0121100 Rhododendron simsii HOM05D003353 ORTHO05D003751 2.8e-14 82.0 114 43.0
DCAR_007093 Daucus carota HOM05D003353 ORTHO05D003751 3.7e-14 81.6 100 47.0
HPP92_008854 Vanilla planifolia HOM05D003353 ORTHO05D003751 4.8e-14 81.3 59 67.8
Oeu056394.4 Olea europaea HOM05D003353 ORTHO05D003751 8.2e-14 80.5 113 44.2
GSVIVG01012339001 Vitis vinifera HOM05D003353 ORTHO05D003751 1.8e-13 79.3 87 52.9
HanXRQChr17g0569791 Helianthus annuus HOM05D003353 ORTHO05D003751 5.3e-13 77.8 96 49.0
DCAR_021679 Daucus carota HOM05D003353 ORTHO05D003751 1.6e-12 76.3 66 60.6
Oeu003445.1 Olea europaea HOM05D003353 ORTHO05D003751 3.5e-12 75.1 84 45.2
QL03p061451 Quercus lobata HOM05D003353 ORTHO05D003751 3.5e-12 75.1 119 44.5
unitig_26.g10339 Utricularia gibba HOM05D003353 ORTHO05D003751 4.5e-12 74.7 75 52.0
Os02g0192400 Oryza sativa ssp. japonica HOM05D003353 ORTHO05D003751 5.9e-12 74.3 54 61.1
Migut.H00131 Erythranthe guttata HOM05D003353 ORTHO05D003751 8.5e-11 70.5 53 69.8
Migut.H00129 Erythranthe guttata HOM05D003353 ORTHO05D003751 1.1e-10 70.1 53 69.8
vmacro16257 Vaccinium macrocarpon HOM05D003353 ORTHO05D003751 1.5e-10 69.7 66 48.5
Mapoly0064s0056 Marchantia polymorpha HOM05D003353 ORTHO05D003751 1.9e-10 69.3 54 59.3
Migut.H00132 Erythranthe guttata HOM05D003353 ORTHO05D003751 5.5e-10 67.8 53 66.0
Zm00001eb206240 Zea mays HOM05D003353 ORTHO05D003751 7.2e-10 67.4 54 55.6
Pp3c2_35750 Physcomitrium patens HOM05D003353 ORTHO05D003751 5.2e-08 61.2 68 41.2
Pp3c5_19640 Physcomitrium patens HOM05D003353 ORTHO05D003751 5.2e-08 61.2 91 39.6
Pp3c1_860 Physcomitrium patens HOM05D003353 ORTHO05D003751 2.6e-07 58.9 68 42.6
ECA232G4683 Erigeron canadensis HOM05D003353 ORTHO05D003751 4.4e-07 58.2 59 54.2
AagrBONN_evm.TU.Sc2ySwM_228.4331 Anthoceros agrestis HOM05D003353 ORTHO05D003751 1.7e-06 56.2 53 49.1
Aqoxy3G00985 Aquilegia oxysepala HOM05D003353 ORTHO05D003751 1.7e-06 56.2 64 48.4
Pp3c6_8120 Physcomitrium patens HOM05D003353 ORTHO05D003751 2.2e-06 55.8 92 34.8
Lsat_1_v5_gn_4_181301 Lactuca sativa HOM05D003353 ORTHO05D003751 6.3e-06 54.3 100 38.0
Lsat_1_v5_gn_8_143300 Lactuca sativa HOM05D003353 ORTHO05D003751 6.3e-06 54.3 53 56.6


User provided reference genes

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