Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN14G1256 Fragaria x ananassa HOM05D000882 ORTHO05D035585 7.4e-89 330.5 164 100.0
FAN14G0965 Fragaria x ananassa HOM05D000882 ORTHO05D035585 3.4e-86 321.6 164 97.6
FAN09G0602 Fragaria x ananassa HOM05D000882 ORTHO05D029557 6.5e-53 211.1 134 80.6
FvH4_6g12031 Fragaria vesca HOM05D000882 ORTHO05D035585 1.1e-47 193.7 122 81.1
RcHm_v2.0_Chr3g0463881 Rosa chinensis HOM05D000882 ORTHO05D029557 1.2e-46 190.3 171 60.2
FAN02G3523 Fragaria x ananassa HOM05D000882 ORTHO05D208266 4.7e-43 178.3 119 79.0
FAN17G0306 Fragaria x ananassa HOM05D000882 ORTHO05D029557 1.2e-41 173.7 171 58.5
FvH4_4g02680 Fragaria vesca HOM05D000882 ORTHO05D029557 3.4e-41 172.2 171 57.9
RcHm_v2.0_Chr7g0189951 Rosa chinensis HOM05D000882 ORTHO05D001142 3.9e-21 105.5 187 37.4
RcHm_v2.0_Chr7g0189961 Rosa chinensis HOM05D000882 ORTHO05D001142 1.4e-15 87.0 162 34.6
Lalb_Chr08g0234101 Lupinus albus HOM05D000882 ORTHO05D001142 4.7e-11 72.0 168 33.3
FvH4_1g01060 Fragaria vesca HOM05D000882 ORTHO05D001142 1.1e-10 70.9 170 37.1
Sed0007584 Sechium edule HOM05D000882 ORTHO05D001142 1.1e-10 70.9 102 42.2
Sed0011489 Sechium edule HOM05D000882 ORTHO05D001142 1.1e-10 70.9 102 42.2
ClCG08G000930 Citrullus lanatus HOM05D000882 ORTHO05D001142 1.4e-10 70.5 102 42.2
Rhsim01G0035300 Rhododendron simsii HOM05D000882 ORTHO05D001142 2.4e-10 69.7 173 36.4
Carub.0008s1854 Capsella rubella HOM05D000882 ORTHO05D001142 3.1e-10 69.3 172 34.3
FAN13G1030 Fragaria x ananassa HOM05D000882 ORTHO05D001142 3.1e-10 69.3 156 35.3
Prupe.7G261400 Prunus persica HOM05D000882 ORTHO05D001142 3.1e-10 69.3 172 36.0
RcHm_v2.0_Chr7g0189941 Rosa chinensis HOM05D000882 ORTHO05D001142 3.1e-10 69.3 153 33.3
arahy.Tifrunner.gnm1.ann1.WR01F1 Arachis hypogaea HOM05D000882 ORTHO05D001142 4.0e-10 68.9 168 33.3
arahy.Tifrunner.gnm1.ann1.SC0NT9 Arachis hypogaea HOM05D000882 ORTHO05D001142 6.9e-10 68.2 168 33.3
Dinv42867 Davidia involucrata HOM05D000882 ORTHO05D001142 6.9e-10 68.2 172 35.5
Dinv43233 Davidia involucrata HOM05D000882 ORTHO05D001142 6.9e-10 68.2 172 35.5
SGA_v2.0_scaffold549G52858 Striga asiatica HOM05D000882 ORTHO05D001142 6.9e-10 68.2 172 33.7
arahy.Tifrunner.gnm1.ann1.IVS2PB Arachis hypogaea HOM05D000882 ORTHO05D001142 9.0e-10 67.8 168 32.7
Glyma.02G203000 Glycine max HOM05D000882 ORTHO05D001142 9.0e-10 67.8 168 33.9
MD09G1131300 Malus domestica HOM05D000882 ORTHO05D001142 9.0e-10 67.8 102 40.2
Phvul.005G040600 Phaseolus vulgaris HOM05D000882 ORTHO05D001142 9.0e-10 67.8 168 33.3
AL8G34090 Arabidopsis lyrata HOM05D000882 ORTHO05D001142 1.2e-09 67.4 172 35.5
Thecc.09G188000 Theobroma cacao HOM05D000882 ORTHO05D001142 1.2e-09 67.4 172 34.3
Cfa019391 Carpinus fangiana HOM05D000882 ORTHO05D001142 1.5e-09 67.0 102 43.1
CiPaw.15G175300 Carya illinoinensis HOM05D000882 ORTHO05D001142 1.5e-09 67.0 103 40.8
RcHm_v2.0_Chr2g0085821 Rosa chinensis HOM05D000882 ORTHO05D001142 1.5e-09 67.0 170 35.3
Atru.chr7.97 Acer truncatum HOM05D000882 ORTHO05D001142 2.0e-09 66.6 170 34.1
Manes.08G068000 Manihot esculenta HOM05D000882 ORTHO05D001142 2.0e-09 66.6 172 33.1
Rhsim01G0036300 Rhododendron simsii HOM05D000882 ORTHO05D001142 2.0e-09 66.6 152 38.2
AT5G58003 Arabidopsis thaliana HOM05D000882 ORTHO05D001142 2.6e-09 66.2 172 34.9
FAN18G1701 Fragaria x ananassa HOM05D000882 ORTHO05D001142 2.6e-09 66.2 171 29.2
Glyma.17G074700 Glycine max HOM05D000882 ORTHO05D001142 2.6e-09 66.2 168 32.7
GSVIVG01002283001 Vitis vinifera HOM05D005230 ORTHO05D006506 3.4e-09 65.9 102 42.2
GSVIVG01006782001 Vitis vinifera HOM05D000882 ORTHO05D001142 3.4e-09 65.9 172 33.1
CsaV3_5G040120 Cucumis sativus L. HOM05D000882 ORTHO05D001142 4.4e-09 65.5 102 40.2
Migut.B00998 Erythranthe guttata HOM05D000882 ORTHO05D001142 4.4e-09 65.5 172 31.4
FvH4_7g08260 Fragaria vesca HOM05D000882 ORTHO05D001142 4.4e-09 65.5 169 33.7
CiPaw.16G114000 Carya illinoinensis HOM05D000882 ORTHO05D001142 5.8e-09 65.1 172 32.0
Gohir.A02G012100 Gossypium hirsutum HOM05D000882 ORTHO05D001142 5.8e-09 65.1 172 33.7
MELO3C022188.2 Cucumis melo HOM05D000882 ORTHO05D001142 7.6e-09 64.7 102 40.2
FvH4_5g08470 Fragaria vesca HOM05D000882 ORTHO05D001142 7.6e-09 64.7 171 28.7
Hma1.2p1_0028F.1_g017460 Hydrangea macrophylla HOM05D000882 ORTHO05D001142 7.6e-09 64.7 102 44.1
Lsat_1_v5_gn_4_18440 Lactuca sativa HOM05D000882 ORTHO05D001142 7.6e-09 64.7 149 38.3
RcHm_v2.0_Chr6g0257451 Rosa chinensis HOM05D000882 ORTHO05D001142 7.6e-09 64.7 175 34.3
Actinidia38334 Actinidia chinensis HOM05D000882 ORTHO05D001142 9.9e-09 64.3 172 34.3
EL10Ac2g02952 Beta vulgaris HOM05D000882 ORTHO05D001142 9.9e-09 64.3 152 36.2
FAN08G0259 Fragaria x ananassa HOM05D000882 ORTHO05D001142 9.9e-09 64.3 171 29.2
PGR102G0086 Punica granatum HOM05D000882 ORTHO05D001142 9.9e-09 64.3 172 32.6
VMungo1080G1773 Vigna mungo HOM05D000882 ORTHO05D001142 9.9e-09 64.3 147 35.4
VMungo1215G1818 Vigna mungo HOM05D000882 ORTHO05D001142 9.9e-09 64.3 169 32.5
Manes.06G019000 Manihot esculenta HOM05D000882 ORTHO05D001142 1.3e-08 63.9 102 40.2
Peaxi162Scf00594g00525 Petunia axillaris HOM05D000882 ORTHO05D001142 1.3e-08 63.9 150 34.0
RcHm_v2.0_Chr6g0256111 Rosa chinensis HOM05D000882 ORTHO05D001142 1.3e-08 63.9 174 33.3
ECA234G2782 Erigeron canadensis HOM05D000882 ORTHO05D001142 1.7e-08 63.5 173 34.1
RcHm_v2.0_Chr4g0392421 Rosa chinensis HOM05D000882 ORTHO05D001142 1.7e-08 63.5 174 33.9
RcHm_v2.0_Chr6g0254001 Rosa chinensis HOM05D000882 ORTHO05D001142 1.7e-08 63.5 170 30.6
TWI63G1431 Tripterygium wilfordii HOM05D000882 ORTHO05D001142 2.2e-08 63.2 173 30.6
Aa31LG3G13800 Aethionema arabicum HOM05D000882 ORTHO05D001142 2.9e-08 62.8 172 32.0
BraA03t10560Z Brassica rapa HOM05D000882 ORTHO05D001142 2.9e-08 62.8 172 33.7
AUR62042619 Chenopodium quinoa HOM05D000882 ORTHO05D001142 2.9e-08 62.8 172 33.7
Gohir.A02G012000 Gossypium hirsutum HOM05D000882 ORTHO05D001142 2.9e-08 62.8 102 41.2
Phvul.003G156800 Phaseolus vulgaris HOM05D000882 ORTHO05D001142 2.9e-08 62.8 168 32.1
TPR.G39212 Trifolium pratense HOM05D000882 ORTHO05D001142 2.9e-08 62.8 168 33.9
TWI32G1214 Tripterygium wilfordii HOM05D000882 ORTHO05D001142 2.9e-08 62.8 172 31.4
TAR626G1907 Trochodendron aralioides HOM05D000882 ORTHO05D001142 2.9e-08 62.8 170 34.1
CAN.G1424.9 Capsicum annuum HOM05D000882 ORTHO05D001142 3.8e-08 62.4 102 41.2
Ca_21118_v3 Cicer arietinum L. HOM05D000882 ORTHO05D001142 3.8e-08 62.4 168 31.5
FvH4_7g07841 Fragaria vesca HOM05D000882 ORTHO05D001142 3.8e-08 62.4 169 33.7
Gorai.005G016300 Gossypium raimondii HOM05D000882 ORTHO05D001142 3.8e-08 62.4 172 32.6
AUR62016253 Chenopodium quinoa HOM05D000882 ORTHO05D001142 4.9e-08 62.0 172 32.0
Haze_19222 Corylus avellana HOM05D000882 ORTHO05D001142 4.9e-08 62.0 110 40.0
THA.LOC104816771 Tarenaya hassleriana HOM05D000882 ORTHO05D001142 4.9e-08 62.0 172 32.6
Actinidia04291 Actinidia chinensis HOM05D000882 ORTHO05D001142 6.4e-08 61.6 172 33.1
Cpa.g.sc26.260 Carica papaya HOM05D000882 ORTHO05D001142 6.4e-08 61.6 97 39.2
SHI02814 Sapria himalayana HOM05D000882 ORTHO05D001142 6.4e-08 61.6 151 34.4
BcaNung07255 Brassica carinata HOM05D000882 ORTHO05D001142 8.4e-08 61.2 130 38.5
A03p12450 Brassica napus HOM05D000882 ORTHO05D001142 8.4e-08 61.2 172 33.1
C03p14660 Brassica napus HOM05D000882 ORTHO05D001142 8.4e-08 61.2 172 33.1
AUR62014762 Chenopodium quinoa HOM05D000882 ORTHO05D001142 8.4e-08 61.2 146 34.2
COL.COLO4_28864 Corchorus olitorius HOM05D000882 ORTHO05D001142 8.4e-08 61.2 170 32.4
Migut.M00493 Erythranthe guttata HOM05D000882 ORTHO05D001142 8.4e-08 61.2 150 33.3
Lj4g0027533 Lotus japonicus HOM05D000882 ORTHO05D001142 8.4e-08 61.2 168 32.1
Lalb_Chr13g0300911 Lupinus albus HOM05D000882 ORTHO05D001142 8.4e-08 61.2 147 33.3
Medtr4g121140 Medicago truncatula HOM05D000882 ORTHO05D001142 8.4e-08 61.2 168 32.1
Nitab4.5_0006527g0010 Nicotiana tabacum HOM05D000882 ORTHO05D001142 8.4e-08 61.2 172 32.0
Lj8A601G12 Lonicera japonica HOM05D000882 ORTHO05D001142 1.1e-07 60.8 148 36.5
Nn2g12339 Nelumbo nucifera HOM05D000882 ORTHO05D001142 1.1e-07 60.8 102 40.2
RcHm_v2.0_Chr6g0256301 Rosa chinensis HOM05D000882 ORTHO05D001142 1.4e-07 60.5 174 32.8
RcHm_v2.0_Chr6g0276921 Rosa chinensis HOM05D000882 ORTHO05D001142 1.4e-07 60.5 175 32.6
BolC3t13907H Brassica oleracea HOM05D000882 ORTHO05D001142 1.9e-07 60.1 172 32.6
CARHR271800 Cardamine hirsuta HOM05D000882 ORTHO05D001142 1.9e-07 60.1 173 32.9
Solyc07g005450.3 Solanum lycopersicum HOM05D000882 ORTHO05D001142 1.9e-07 60.1 102 40.2
Solyc07g005460.4 Solanum lycopersicum HOM05D000882 ORTHO05D001142 1.9e-07 60.1 102 40.2
Sopen07g001340 Solanum pennellii HOM05D000882 ORTHO05D001142 1.9e-07 60.1 102 40.2
BcaB01g04470 Brassica carinata HOM05D000882 ORTHO05D001142 2.4e-07 59.7 172 32.6
Sp6g19670 Schrenkiella parvula HOM05D000882 ORTHO05D001142 2.4e-07 59.7 172 33.1
Sc02g0006320 Simmondsia chinensis HOM05D000882 ORTHO05D001142 2.4e-07 59.7 172 32.6
THA.LOC104816865 Tarenaya hassleriana HOM05D000882 ORTHO05D001142 2.4e-07 59.7 172 32.0
MSTRG.26284 Avicennia marina HOM05D000882 ORTHO05D001142 3.2e-07 59.3 102 40.2
CSS0011921 Camellia sinensis var. sinensis HOM05D000882 ORTHO05D001142 3.2e-07 59.3 172 33.1
Duzib150G0034 Durio zibethinus HOM05D000882 ORTHO05D001142 3.2e-07 59.3 102 37.3
Psat4g009280 Pisum sativum HOM05D000882 ORTHO05D001142 3.2e-07 59.3 168 31.5
Gohir.D02G012800 Gossypium hirsutum HOM05D000882 ORTHO05D001142 4.2e-07 58.9 97 39.2
Lj8C602G10 Lonicera japonica HOM05D000882 ORTHO05D001142 4.2e-07 58.9 97 42.3
Sopen07g001330 Solanum pennellii HOM05D000882 ORTHO05D001142 4.2e-07 58.9 102 39.2
Dinv41388 Davidia involucrata HOM05D000882 ORTHO05D001142 5.4e-07 58.5 84 44.0
RcHm_v2.0_Chr1g0324741 Rosa chinensis HOM05D000882 ORTHO05D001142 5.4e-07 58.5 175 32.6
Hund22296 Selenicereus undatus HOM05D000882 ORTHO05D001142 5.4e-07 58.5 102 40.2
Ah.16g106020 Amaranthus hybridus HOM05D000882 ORTHO05D001142 7.1e-07 58.2 168 34.5
BcaC04g19919 Brassica carinata HOM05D000882 ORTHO05D001142 7.1e-07 58.2 102 38.2
A10p16170 Brassica napus HOM05D000882 ORTHO05D001142 7.1e-07 58.2 102 38.2
BolC9t57833H Brassica oleracea HOM05D000882 ORTHO05D001142 7.1e-07 58.2 102 38.2
BraA10t43612Z Brassica rapa HOM05D000882 ORTHO05D001142 7.1e-07 58.2 102 38.2
Potri.018G108300 Populus trichocarpa HOM05D000882 ORTHO05D001142 7.1e-07 58.2 102 38.2
BcaB08g36159 Brassica carinata HOM05D000882 ORTHO05D001142 9.3e-07 57.8 172 32.0
Duzib151G0910 Durio zibethinus HOM05D000882 ORTHO05D001142 9.3e-07 57.8 102 36.3
RcHm_v2.0_Chr6g0267911 Rosa chinensis HOM05D000882 ORTHO05D001142 9.3e-07 57.8 173 31.2
arahy.Tifrunner.gnm1.ann1.GHMM2H Arachis hypogaea HOM05D000882 ORTHO05D001142 1.2e-06 57.4 84 39.3
C09p49840 Brassica napus HOM05D000882 ORTHO05D001142 1.2e-06 57.4 172 32.0
Eucgr.C02587 Eucalyptus grandis HOM05D000882 ORTHO05D001142 1.2e-06 57.4 169 30.8
Hund22135 Selenicereus undatus HOM05D000882 ORTHO05D001142 1.2e-06 57.4 102 39.2
COL.COLO4_27950 Corchorus olitorius HOM05D000882 ORTHO05D001142 1.6e-06 57.0 170 31.8
GSVIVG01031985001 Vitis vinifera HOM05D000882 ORTHO05D001142 1.6e-06 57.0 101 37.6
AUR62005899 Chenopodium quinoa HOM05D000882 ORTHO05D001142 2.1e-06 56.6 187 31.6
Thhalv10013455m.g Eutrema salsugineum HOM05D000882 ORTHO05D001142 2.1e-06 56.6 85 40.0
FvH4_2g05941 Fragaria vesca HOM05D000882 ORTHO05D001142 2.1e-06 56.6 184 31.5
PSO782G4611 Papaver somniferum HOM05D000882 ORTHO05D001142 2.1e-06 56.6 105 39.0
QL02p093012 Quercus lobata HOM05D000882 ORTHO05D001142 2.7e-06 56.2 84 40.5
arahy.Tifrunner.gnm1.ann1.40JS6F Arachis hypogaea HOM05D000882 ORTHO05D001142 3.5e-06 55.8 168 31.0
PSO421G0246 Papaver somniferum HOM05D000882 ORTHO05D001142 3.5e-06 55.8 175 32.6
RcHm_v2.0_Chr6g0256201 Rosa chinensis HOM05D000882 ORTHO05D001142 3.5e-06 55.8 168 32.7
Nitab4.5_0005188g0010 Nicotiana tabacum HOM05D000882 ORTHO05D001142 6.0e-06 55.1 84 41.7
PSO063G7635 Papaver somniferum HOM05D000882 ORTHO05D001142 6.0e-06 55.1 105 39.0
Psat1g015800 Pisum sativum HOM05D000882 ORTHO05D001142 6.0e-06 55.1 168 33.3
Cc06_g15150 Coffea canephora HOM05D000882 ORTHO05D001142 7.8e-06 54.7 151 33.1
HanXRQChr08g0214261 Helianthus annuus HOM05D000882 ORTHO05D001142 7.8e-06 54.7 87 40.2


User provided reference genes

Program Settings