Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN13G2402 Fragaria x ananassa HOM05D004256 ORTHO05D005224 0.0e+00 1462.2 736 100.0
FAN11G3535 Fragaria x ananassa HOM05D004256 ORTHO05D005224 0.0e+00 1119.8 783 77.3
FAN16G0878 Fragaria x ananassa HOM05D004256 ORTHO05D005224 0.0e+00 1116.3 801 75.9
FAN21G3884 Fragaria x ananassa HOM05D004256 ORTHO05D005224 0.0e+00 1096.3 783 75.6
FvH4_3g10230 Fragaria vesca HOM05D004256 ORTHO05D005224 0.0e+00 1090.5 783 75.6
RcHm_v2.0_Chr5g0016471 Rosa chinensis HOM05D004256 ORTHO05D005224 1.3e-305 1052.7 784 72.8
FAN04G0519 Fragaria x ananassa HOM05D004256 ORTHO05D005224 5.4e-280 967.6 555 89.9
FAN18G3233 Fragaria x ananassa HOM05D004256 ORTHO05D005224 3.5e-263 911.8 822 65.2
FAN08G1809 Fragaria x ananassa HOM05D004256 ORTHO05D005224 7.1e-248 860.9 501 88.8
Prupe.4G091400 Prunus persica HOM05D004256 ORTHO05D005224 3.2e-240 835.5 782 59.3
FAN18G2742 Fragaria x ananassa HOM05D004256 ORTHO05D005224 7.1e-240 834.3 780 64.5
MD05G1271600 Malus domestica HOM05D004256 ORTHO05D005224 9.0e-235 817.4 787 58.4
MD10G1252200 Malus domestica HOM05D004256 ORTHO05D005224 9.9e-226 787.3 785 56.6
CiPaw.09G142400 Carya illinoinensis HOM05D004256 ORTHO05D005224 2.6e-194 682.9 793 49.7
Cfa004790 Carpinus fangiana HOM05D004256 ORTHO05D005224 5.0e-193 678.7 785 49.4
QL05p062735 Quercus lobata HOM05D004256 ORTHO05D005224 8.5e-193 677.9 780 50.3
TAR627G0580 Trochodendron aralioides HOM05D004256 ORTHO05D005224 2.5e-184 649.8 766 48.8
GSVIVG01021670001 Vitis vinifera HOM05D004256 ORTHO05D005224 9.7e-181 637.9 763 48.0
Atru.chr10.795 Acer truncatum HOM05D004256 ORTHO05D005224 1.3e-180 637.5 785 48.4
Dinv11058 Davidia involucrata HOM05D004256 ORTHO05D005224 2.0e-178 630.2 783 47.0
Ciclev10014179m.g Citrus clementina HOM05D004256 ORTHO05D005224 8.5e-177 624.8 764 48.8
COL.COLO4_26853 Corchorus olitorius HOM05D004256 ORTHO05D005224 1.1e-176 624.4 778 47.6
Manes.06G068000 Manihot esculenta HOM05D004256 ORTHO05D005224 1.1e-176 624.4 784 46.0
Sabra16G0315900 Salix brachista HOM05D004256 ORTHO05D005224 1.1e-176 624.4 788 47.5
Thecc.06G004200 Theobroma cacao HOM05D004256 ORTHO05D005224 1.5e-176 624.0 776 47.0
Duzib192G0446 Durio zibethinus HOM05D004256 ORTHO05D005224 2.1e-175 620.2 775 47.1
Potri.001G465500 Populus trichocarpa HOM05D004256 ORTHO05D005224 2.7e-175 619.8 786 47.1
CANSAT35G1931 Cannabis sativa HOM05D004256 ORTHO05D005224 4.7e-175 619.0 768 46.1
MELO3C002826.2 Cucumis melo HOM05D004256 ORTHO05D005224 1.4e-174 617.5 788 45.7
CsaV3_1G037200 Cucumis sativus L. HOM05D004256 ORTHO05D005224 6.8e-174 615.1 784 45.9
Gohir.D06G123900 Gossypium hirsutum HOM05D004256 ORTHO05D005224 1.3e-172 610.9 771 47.1
TWI38G1119 Tripterygium wilfordii HOM05D004256 ORTHO05D005224 1.3e-172 610.9 759 47.0
Gorai.010G144100 Gossypium raimondii HOM05D004256 ORTHO05D005224 6.3e-172 608.6 771 47.0
ClCG03G008210 Citrullus lanatus HOM05D004256 ORTHO05D005224 5.4e-171 605.5 785 45.5
Lalb_Chr12g0208801 Lupinus albus HOM05D004256 ORTHO05D005224 2.0e-170 603.6 775 46.3
Gohir.A06G119600 Gossypium hirsutum HOM05D004256 ORTHO05D005224 2.7e-170 603.2 771 46.7
TWI63G0578 Tripterygium wilfordii HOM05D004256 ORTHO05D005224 2.7e-170 603.2 771 46.7
Dinv16826 Davidia involucrata HOM05D004256 ORTHO05D005224 5.9e-170 602.1 731 48.3
Eucgr.K01946 Eucalyptus grandis HOM05D004256 ORTHO05D005224 1.0e-169 601.3 767 45.9
Lalb_Chr13g0291451 Lupinus albus HOM05D004256 ORTHO05D005224 1.3e-169 600.9 751 47.3
arahy.Tifrunner.gnm1.ann1.71MGM7 Arachis hypogaea HOM05D004256 ORTHO05D005224 1.9e-168 597.0 777 45.8
arahy.Tifrunner.gnm1.ann1.NJCF43 Arachis hypogaea HOM05D004256 ORTHO05D005224 7.2e-168 595.1 777 45.7
Lj4g0013937 Lotus japonicus HOM05D004256 ORTHO05D005224 6.1e-167 592.0 776 46.0
Potri.011G163600 Populus trichocarpa HOM05D004256 ORTHO05D005224 4.0e-166 589.3 778 46.4
Sed0001829 Sechium edule HOM05D004256 ORTHO05D005224 2.6e-165 586.6 724 46.4
Ca_18290_v3 Cicer arietinum L. HOM05D004256 ORTHO05D005224 9.2e-163 578.2 785 46.2
TPR.G30378 Trifolium pratense HOM05D004256 ORTHO05D005224 5.9e-162 575.5 773 45.9
Glyma.05G126600 Glycine max HOM05D004256 ORTHO05D005224 1.7e-161 573.9 753 45.9
Glyma.08G081600 Glycine max HOM05D004256 ORTHO05D005224 8.6e-161 571.6 752 44.9
PGR031G3593 Punica granatum HOM05D004256 ORTHO05D005224 1.9e-160 570.5 760 44.5
Phvul.002G198200 Phaseolus vulgaris HOM05D004256 ORTHO05D005224 5.6e-160 568.9 761 45.2
Cc09_g07800 Coffea canephora HOM05D004256 ORTHO05D005224 8.9e-158 561.6 781 43.1
Medtr4g094545 Medicago truncatula HOM05D004256 ORTHO05D005224 2.0e-157 560.5 776 45.4
Rhsim02G0162800 Rhododendron simsii HOM05D004256 ORTHO05D005224 2.0e-157 560.5 784 44.4
MBI02_g25367_MAGBIO Magnolia biondii HOM05D004256 ORTHO05D005224 1.3e-156 557.8 781 42.9
Migut.H01323 Erythranthe guttata HOM05D004256 ORTHO05D005224 6.4e-156 555.4 747 44.4
Nitab4.5_0001583g0180 Nicotiana tabacum HOM05D004256 ORTHO05D005224 1.4e-155 554.3 781 43.5
Solyc02g070030.4 Solanum lycopersicum HOM05D004256 ORTHO05D005224 9.2e-155 551.6 754 43.6
Nitab4.5_0001225g0210 Nicotiana tabacum HOM05D004256 ORTHO05D005224 1.6e-154 550.8 798 42.9
Sopen02g019190 Solanum pennellii HOM05D004256 ORTHO05D005224 3.9e-153 546.2 747 43.5
DCAR_003847 Daucus carota HOM05D004256 ORTHO05D005224 8.6e-153 545.0 767 42.5
PSO675G2772 Papaver somniferum HOM05D004256 ORTHO05D005224 1.1e-152 544.7 771 44.0
Actinidia31384 Actinidia chinensis HOM05D004256 ORTHO05D005224 3.3e-152 543.1 647 48.1
Aqoxy5G02462 Aquilegia oxysepala HOM05D004256 ORTHO05D005224 3.6e-151 539.7 764 43.2
Peaxi162Scf00670g00215 Petunia axillaris HOM05D004256 ORTHO05D005224 3.6e-151 539.7 788 42.4
CAN.G79.16 Capsicum annuum HOM05D004256 ORTHO05D005224 1.0e-150 538.1 758 43.0
SalBow7G4118 Salvia bowleyana HOM05D004256 ORTHO05D005224 3.1e-150 536.6 767 42.2
THA.LOC104812246 Tarenaya hassleriana HOM05D004256 ORTHO05D005224 8.9e-150 535.0 762 42.7
Oeu021898.3 Olea europaea HOM05D004256 ORTHO05D005224 7.5e-149 531.9 754 42.0
Nn2g15522 Nelumbo nucifera HOM05D004256 ORTHO05D005224 2.4e-147 526.9 754 43.4
Psat7g093560 Pisum sativum HOM05D004256 ORTHO05D005224 5.4e-147 525.8 835 40.8
Lj1A1161T63 Lonicera japonica HOM05D004256 ORTHO05D005224 4.3e-144 516.2 754 42.7
SGA_v2.0_scaffold106G30680 Striga asiatica HOM05D004256 ORTHO05D005224 3.1e-142 510.0 752 41.2
Eucgr.L00874 Eucalyptus grandis HOM05D004256 ORTHO05D005224 8.9e-142 508.4 695 44.2
Ah.14g086130 Amaranthus hybridus HOM05D004256 ORTHO05D005224 1.2e-141 508.1 779 41.8
Aa31LG6G2980 Aethionema arabicum HOM05D004256 ORTHO05D005224 2.4e-139 500.4 764 41.4
Sc17g0004590 Simmondsia chinensis HOM05D004256 ORTHO05D005224 1.6e-138 497.7 665 44.1
EL10Ac8g19544 Beta vulgaris HOM05D004256 ORTHO05D005224 5.1e-137 492.7 778 40.9
ECA236G4703 Erigeron canadensis HOM05D004256 ORTHO05D005224 5.1e-137 492.7 752 42.0
Sp7g19000 Schrenkiella parvula HOM05D004256 ORTHO05D005224 2.8e-135 486.9 776 40.3
Thhalv10024326m.g Eutrema salsugineum HOM05D004256 ORTHO05D005224 1.1e-134 485.0 801 39.1
Haze_10384 Corylus avellana HOM05D004256 ORTHO05D005224 5.2e-134 482.6 670 44.8
HanXRQChr04g0117221 Helianthus annuus HOM05D004256 ORTHO05D005224 5.2e-134 482.6 748 40.8
Carub.0007s2052 Capsella rubella HOM05D004256 ORTHO05D005224 6.8e-134 482.3 782 39.4
Haze_10386 Corylus avellana HOM05D004256 ORTHO05D005224 6.8e-134 482.3 670 44.6
Lsat_1_v5_gn_7_34341 Lactuca sativa HOM05D004256 ORTHO05D005224 3.4e-133 479.9 736 39.8
AL7G33240 Arabidopsis lyrata HOM05D004256 ORTHO05D005224 3.8e-132 476.5 783 39.7
AT4G20910 Arabidopsis thaliana HOM05D004256 ORTHO05D005224 2.1e-130 470.7 778 40.4
BraA01t01176Z Brassica rapa HOM05D004256 ORTHO05D005224 1.7e-129 467.6 773 39.2
CARHR227470 Cardamine hirsuta HOM05D004256 ORTHO05D005224 1.1e-128 464.9 784 38.9
BolC1t01426H Brassica oleracea HOM05D004256 ORTHO05D005224 7.3e-128 462.2 778 38.3
VMungo0251G1323 Vigna mungo HOM05D004256 ORTHO05D005224 7.6e-125 452.2 701 41.5
Os07g0164000 Oryza sativa ssp. japonica HOM05D004256 ORTHO05D005224 8.4e-124 448.7 761 36.4
Oeu014331.2 Olea europaea HOM05D004256 ORTHO05D005224 3.2e-123 446.8 648 41.5
HPP92_009410 Vanilla planifolia HOM05D004256 ORTHO05D005224 9.3e-123 445.3 770 37.0
AUR62034030 Chenopodium quinoa HOM05D004256 ORTHO05D005224 4.0e-118 429.9 667 39.7
AUR62043099 Chenopodium quinoa HOM05D004256 ORTHO05D005224 4.0e-118 429.9 664 40.4
Zm00001eb300700 Zea mays HOM05D004256 ORTHO05D005224 3.4e-117 426.8 768 37.2
AL7G33230 Arabidopsis lyrata HOM05D004256 ORTHO05D005224 3.3e-112 410.2 768 37.0
Thhalv10024347m.g Eutrema salsugineum HOM05D004256 ORTHO05D005224 1.8e-110 404.4 793 35.2
BraA01t01178Z Brassica rapa HOM05D004256 ORTHO05D005224 2.9e-108 397.1 799 34.9
Carub.0007s2051 Capsella rubella HOM05D004256 ORTHO05D005224 4.9e-108 396.4 762 35.4
CARHR227480 Cardamine hirsuta HOM05D004256 ORTHO05D005224 5.5e-107 392.9 770 35.7
A01p12320 Brassica napus HOM05D004256 ORTHO05D005224 2.7e-106 390.6 796 34.4
BcaC09g51291 Brassica carinata HOM05D004256 ORTHO05D005224 1.0e-105 388.7 790 34.9
C01p14750 Brassica napus HOM05D004256 ORTHO05D005224 8.7e-105 385.6 791 35.0
AT4G20920 Arabidopsis thaliana HOM05D004256 ORTHO05D005224 2.5e-104 384.0 792 34.7
BolC1t01428H Brassica oleracea HOM05D004256 ORTHO05D005224 2.0e-101 374.4 797 34.6
BcaC09g51292 Brassica carinata HOM05D004256 ORTHO05D005224 7.6e-101 372.5 713 36.5
C01p14740 Brassica napus HOM05D004256 ORTHO05D005224 1.3e-100 371.7 708 36.3
BraA01t01177Z Brassica rapa HOM05D004256 ORTHO05D005224 4.2e-99 366.7 710 35.8
CSS0013637 Camellia sinensis var. sinensis HOM05D004256 ORTHO05D005224 1.0e-97 362.1 356 53.7
FAN25G0985 Fragaria x ananassa HOM05D004256 ORTHO05D005224 3.1e-94 350.5 208 86.1
ATR1098G117 Amborella trichopoda HOM05D004256 ORTHO05D005224 1.7e-92 344.7 652 35.9
Cpa.g.sc166.41 Carica papaya HOM05D004256 ORTHO05D007693 4.3e-88 330.1 698 37.1
BcaB03g11710 Brassica carinata HOM05D004256 ORTHO05D005224 1.5e-80 305.1 856 29.2
Hma1.2p1_2369F.1_g320760 Hydrangea macrophylla HOM05D004256 ORTHO05D005224 2.4e-70 271.2 402 42.3
CSS0036381 Camellia sinensis var. sinensis HOM05D004109 ORTHO05D005867 6.5e-68 263.1 417 40.5
CSS0039858 Camellia sinensis var. sinensis HOM05D004109 ORTHO05D005867 6.5e-68 263.1 417 40.5
Haze_10382 Corylus avellana HOM05D004256 ORTHO05D005224 2.5e-67 261.2 567 35.4
Pp3c1_60 Physcomitrium patens HOM05D004256 ORTHO05D005224 8.0e-66 256.1 761 29.3
Mapoly0004s0071 Marchantia polymorpha HOM05D004256 ORTHO05D005224 8.8e-65 252.7 819 28.4
Sp7g19005 Schrenkiella parvula HOM05D004256 ORTHO05D005224 8.2e-63 246.1 570 31.6
BolC1t01427H Brassica oleracea HOM05D004256 ORTHO05D005224 1.9e-59 235.0 365 42.2
SMO165G0118 Selaginella moellendorffii HOM05D004256 ORTHO05D005224 7.2e-59 233.0 642 30.1
BcaNung04718 Brassica carinata HOM05D004256 ORTHO05D005224 9.4e-59 232.6 354 40.4
AagrBONN_evm.TU.Sc2ySwM_117.1656 Anthoceros agrestis HOM05D004256 ORTHO05D005224 7.5e-56 223.0 646 29.4
unitig_0.g923 Utricularia gibba HOM05D004256 ORTHO05D005224 1.9e-51 208.4 724 26.5
CDE02G4682 Ceratophyllum demersum HOM05D004256 ORTHO05D005224 3.0e-49 201.1 280 42.5
HanXRQChr04g0117231 Helianthus annuus HOM05D004256 ORTHO05D005224 2.5e-43 181.4 293 37.5
BcaC01g00730 Brassica carinata HOM05D004256 ORTHO05D005224 7.3e-43 179.9 201 47.3
CDE02G0763 Ceratophyllum demersum HOM05D004256 ORTHO05D005224 2.4e-38 164.9 394 32.0
BcaC09g51293 Brassica carinata HOM05D004256 ORTHO05D005224 3.0e-36 157.9 245 39.2
FvH4_5g29180 Fragaria vesca HOM05D004256 ORTHO05D005224 9.5e-35 152.9 82 91.5
Zm00001eb161380 Zea mays HOM05D004256 ORTHO05D005224 9.5e-35 152.9 404 31.4
Haze_10375 Corylus avellana HOM05D004256 ORTHO05D005224 1.2e-32 146.0 242 41.7
FAN08G3148 Fragaria x ananassa HOM05D004256 ORTHO05D005224 8.3e-31 139.8 100 74.0
CBR_g29910 Chara braunii HOM05D000019 ORTHO05D005224 7.8e-29 133.3 345 29.0
Haze_01153 Corylus avellana HOM05D004256 ORTHO05D005224 3.1e-25 121.3 156 51.3
VMungo0251G1407 Vigna mungo HOM05D004256 ORTHO05D005224 3.2e-22 111.3 81 61.7
BcaNung04717 Brassica carinata HOM05D004256 ORTHO05D005224 5.4e-22 110.5 428 27.3
Zm00001eb318270 Zea mays HOM05D004256 ORTHO05D005224 9.2e-22 109.8 285 32.3
BcaC06g34131 Brassica carinata HOM05D004256 ORTHO05D005224 8.1e-18 96.7 133 39.1
Actinidia33023 Actinidia chinensis HOM05D004256 ORTHO05D005224 4.0e-17 94.4 77 61.0
BcaC08g44368 Brassica carinata HOM05D004256 ORTHO05D005224 1.2e-16 92.8 147 37.4
BcaC04g20971 Brassica carinata HOM05D004256 ORTHO05D005224 3.2e-14 84.7 147 34.7
PGSC0003DMG400021115 Solanum tuberosum HOM05D004256 ORTHO05D005224 1.2e-13 82.8 120 42.5
BcaC02g08729 Brassica carinata HOM05D004256 ORTHO05D021760 7.3e-11 73.6 91 41.8
arahy.Tifrunner.gnm1.ann1.2P4BCH Arachis hypogaea HOM05D004256 ORTHO05D005224 1.2e-10 72.8 60 60.0
BolC1t01694H Brassica oleracea HOM05D004256 ORTHO05D021760 8.1e-10 70.1 91 41.8
Ca_18291_v3 Cicer arietinum L. HOM05D004256 ORTHO05D005224 1.4e-09 69.3 85 48.2
Zm00001eb357190 Zea mays HOM05D004256 ORTHO05D005224 1.4e-09 69.3 134 34.3
BcaC09g51040 Brassica carinata HOM05D004256 ORTHO05D005224 5.2e-09 67.4 73 47.9
BolC1t04773H Brassica oleracea HOM05D004256 ORTHO05D021760 5.2e-09 67.4 76 46.1
C01p17580 Brassica napus HOM05D004256 ORTHO05D005224 6.9e-09 67.0 119 33.6
BcaC01g00450 Brassica carinata HOM05D004256 ORTHO05D032009 1.2e-08 66.2 74 45.9
C03p79980 Brassica napus HOM05D004256 ORTHO05D032009 3.4e-08 64.7 74 44.6
BolC3t20250H Brassica oleracea HOM05D004256 ORTHO05D032009 3.4e-08 64.7 74 44.6
BolC6t37010H Brassica oleracea HOM05D004256 ORTHO05D005224 4.4e-08 64.3 117 35.9


User provided reference genes

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