Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN13G2222 Fragaria x ananassa HOM05D005544 ORTHO05D007303 1.9e-274 948.7 545 100.0
FAN08G3375 Fragaria x ananassa HOM05D005544 ORTHO05D007303 1.6e-268 929.1 546 98.4
FAN18G1194 Fragaria x ananassa HOM05D005544 ORTHO05D007303 1.2e-265 919.5 547 97.8
FvH4_5g25500 Fragaria vesca HOM05D005544 ORTHO05D007303 1.6e-265 919.1 547 97.8
RcHm_v2.0_Chr7g0215731 Rosa chinensis HOM05D005544 ORTHO05D007303 4.7e-249 864.4 546 92.9
Prupe.1G201800 Prunus persica HOM05D005544 ORTHO05D007303 3.8e-214 748.4 554 81.8
MD03G1274200 Malus domestica HOM05D005544 ORTHO05D007303 1.1e-213 746.9 552 75.9
MD11G1296600 Malus domestica HOM05D005544 ORTHO05D007303 3.0e-211 738.8 552 75.4
Cpa.g.sc9.148 Carica papaya HOM05D005544 ORTHO05D007303 1.8e-187 659.8 545 66.6
Thecc.01G288500 Theobroma cacao HOM05D005544 ORTHO05D007303 3.0e-187 659.1 545 66.8
COL.COLO4_08045 Corchorus olitorius HOM05D005544 ORTHO05D007303 8.8e-187 657.5 547 66.2
Potri.014G135600 Populus trichocarpa HOM05D005544 ORTHO05D007303 1.5e-186 656.8 544 69.5
Duzib211G0556 Durio zibethinus HOM05D005544 ORTHO05D007303 2.6e-186 656.0 547 66.0
TWI59G1451 Tripterygium wilfordii HOM05D005544 ORTHO05D007303 9.7e-186 654.1 547 66.7
Ciclev10019671m.g Citrus clementina HOM05D005544 ORTHO05D007303 4.8e-185 651.7 541 68.0
QL02p074655 Quercus lobata HOM05D005544 ORTHO05D007303 2.9e-182 642.5 546 73.1
Potri.002G213500 Populus trichocarpa HOM05D005544 ORTHO05D007303 5.0e-182 641.7 544 66.0
QL12p023649 Quercus lobata HOM05D005544 ORTHO05D007303 1.1e-181 640.6 546 72.3
QL05p077001 Quercus lobata HOM05D005544 ORTHO05D007303 1.5e-181 640.2 546 72.3
QL12p023600 Quercus lobata HOM05D005544 ORTHO05D007303 1.2e-180 637.1 546 72.0
Manes.02G181800 Manihot esculenta HOM05D005544 ORTHO05D007303 4.7e-180 635.2 544 66.4
CANSAT25G0498 Cannabis sativa HOM05D005544 ORTHO05D007303 5.2e-179 631.7 546 72.0
PGR044G1528 Punica granatum HOM05D005544 ORTHO05D007303 6.7e-179 631.3 545 69.2
PGR088G0006 Punica granatum HOM05D005544 ORTHO05D007303 6.7e-179 631.3 545 69.2
Sabra14G0102000 Salix brachista HOM05D005544 ORTHO05D007303 2.0e-178 629.8 544 68.6
CiPaw.07G098400 Carya illinoinensis HOM05D005544 ORTHO05D007303 9.7e-178 627.5 547 71.1
Sed0004995 Sechium edule HOM05D005544 ORTHO05D007303 6.3e-177 624.8 548 70.8
CsaV3_7G028370 Cucumis sativus L. HOM05D005544 ORTHO05D007303 4.1e-176 622.1 548 71.2
Haze_10363 Corylus avellana HOM05D005544 ORTHO05D007303 5.3e-176 621.7 548 71.0
MELO3C015885.2 Cucumis melo HOM05D005544 ORTHO05D007303 5.3e-176 621.7 548 70.6
Cfa004766 Carpinus fangiana HOM05D005544 ORTHO05D007303 7.0e-176 621.3 548 71.2
Lalb_Chr02g0143021 Lupinus albus HOM05D005544 ORTHO05D007303 1.6e-175 620.2 547 69.8
Lj5g0002288 Lotus japonicus HOM05D005544 ORTHO05D007303 4.5e-175 618.6 541 62.7
VMungo0720G2755 Vigna mungo HOM05D005544 ORTHO05D007303 1.3e-174 617.1 544 61.8
Gohir.D08G054000 Gossypium hirsutum HOM05D005544 ORTHO05D007303 5.0e-174 615.1 535 64.5
Gorai.004G054300 Gossypium raimondii HOM05D005544 ORTHO05D007303 5.0e-174 615.1 535 64.5
CSS0033644 Camellia sinensis var. sinensis HOM05D005544 ORTHO05D007303 6.5e-174 614.8 544 61.8
Atru.chr5.1295 Acer truncatum HOM05D005544 ORTHO05D007303 4.2e-173 612.1 543 71.6
Gohir.A08G044300 Gossypium hirsutum HOM05D005544 ORTHO05D007303 1.2e-172 610.5 533 64.0
Phvul.007G167300 Phaseolus vulgaris HOM05D005544 ORTHO05D007303 5.2e-171 605.1 548 60.9
Ca_10382_v3 Cicer arietinum L. HOM05D005544 ORTHO05D007303 1.8e-168 596.7 539 60.5
Ca_29660_v3 Cicer arietinum L. HOM05D005544 ORTHO05D007303 1.8e-168 596.7 539 60.5
Rhsim13G0018400 Rhododendron simsii HOM05D005544 ORTHO05D007303 7.0e-168 594.7 548 61.7
Medtr1g089260 Medicago truncatula HOM05D005544 ORTHO05D007303 1.3e-166 590.5 547 60.1
vmacro02516 Vaccinium macrocarpon HOM05D005544 ORTHO05D007303 1.3e-166 590.5 552 60.0
Dinv11286 Davidia involucrata HOM05D005544 ORTHO05D007303 2.9e-166 589.3 541 63.2
Glyma.02G151500 Glycine max HOM05D005544 ORTHO05D007303 8.6e-166 587.8 547 62.3
QL12p023632 Quercus lobata HOM05D005544 ORTHO05D007303 8.6e-166 587.8 556 60.6
THA.LOC104802213 Tarenaya hassleriana HOM05D005544 ORTHO05D007303 1.2e-164 583.9 544 58.1
PGSC0003DMG400043560 Solanum tuberosum HOM05D005544 ORTHO05D007303 1.6e-164 583.6 553 67.6
Nitab4.5_0001651g0120 Nicotiana tabacum HOM05D005544 ORTHO05D007303 3.6e-164 582.4 552 61.4
Cc01_g20090 Coffea canephora HOM05D005544 ORTHO05D007303 8.0e-164 581.3 544 65.6
Nitab4.5_0009496g0010 Nicotiana tabacum HOM05D005544 ORTHO05D007303 8.0e-164 581.3 552 61.6
Lsat_1_v5_gn_5_189761 Lactuca sativa HOM05D005544 ORTHO05D007303 3.4e-162 575.9 541 58.0
Aa31LG1G29410 Aethionema arabicum HOM05D005544 ORTHO05D007303 2.2e-161 573.2 544 57.7
Nitab4.5_0015534g0010 Nicotiana tabacum HOM05D005544 ORTHO05D007303 4.9e-161 572.0 552 61.2
Sopen05g006280 Solanum pennellii HOM05D005544 ORTHO05D007303 1.1e-160 570.9 553 58.0
Thhalv10001392m.g Eutrema salsugineum HOM05D005544 ORTHO05D007303 7.0e-160 568.2 541 57.3
Lj1C40T13 Lonicera japonica HOM05D005544 ORTHO05D007303 1.3e-158 563.9 545 58.7
Glyma.10G022600 Glycine max HOM05D005544 ORTHO05D007303 1.7e-158 563.5 536 66.8
TAR362G0205 Trochodendron aralioides HOM05D005544 ORTHO05D007303 5.0e-158 562.0 539 65.7
Sp4g29910 Schrenkiella parvula HOM05D005544 ORTHO05D007303 1.1e-157 560.8 544 56.4
Actinidia00706 Actinidia chinensis HOM05D005544 ORTHO05D007303 5.6e-157 558.5 541 58.2
DCAR_018371 Daucus carota HOM05D005544 ORTHO05D007303 6.1e-156 555.1 549 65.4
Carub.0004s3071 Capsella rubella HOM05D005544 ORTHO05D007303 3.0e-155 552.7 542 56.1
CARHR143370 Cardamine hirsuta HOM05D005544 ORTHO05D007303 5.2e-155 552.0 544 55.7
ECA248G0063 Erigeron canadensis HOM05D005544 ORTHO05D007303 1.5e-154 550.4 544 58.6
AL4G47580 Arabidopsis lyrata HOM05D005544 ORTHO05D007303 5.8e-154 548.5 542 55.5
HanXRQChr11g0334851 Helianthus annuus HOM05D005544 ORTHO05D007303 9.8e-154 547.7 541 55.1
CAN.G184.38 Capsicum annuum HOM05D005544 ORTHO05D007303 2.2e-153 546.6 552 64.5
AT2G47990 Arabidopsis thaliana HOM05D005544 ORTHO05D007303 2.9e-153 546.2 539 58.6
Oeu047906.1 Olea europaea HOM05D005544 ORTHO05D007303 1.9e-152 543.5 549 55.0
Solyc05g010470.4 Solanum lycopersicum HOM05D005544 ORTHO05D007303 1.9e-152 543.5 500 58.8
AUR62042230 Chenopodium quinoa HOM05D005544 ORTHO05D007303 7.0e-152 541.6 550 64.0
Hma1.2p1_0358F.1_g134770 Hydrangea macrophylla HOM05D005544 ORTHO05D007303 1.6e-151 540.4 511 66.3
Nn4g24755 Nelumbo nucifera HOM05D005544 ORTHO05D007303 2.0e-151 540.0 547 63.8
AUR62037787 Chenopodium quinoa HOM05D005544 ORTHO05D007303 3.5e-151 539.3 550 63.1
Ah.09g228790 Amaranthus hybridus HOM05D005544 ORTHO05D007303 2.3e-150 536.6 545 61.7
Nn3g18705 Nelumbo nucifera HOM05D005544 ORTHO05D007303 2.3e-150 536.6 547 63.4
BolC3t12848H Brassica oleracea HOM05D005544 ORTHO05D007303 2.1e-148 530.0 541 53.4
BcaB02g08729 Brassica carinata HOM05D005544 ORTHO05D007303 4.7e-148 528.9 539 62.9
SGA_v2.0_scaffold172G39056 Striga asiatica HOM05D005544 ORTHO05D007303 1.4e-147 527.3 548 52.9
C03p02930 Brassica napus HOM05D005544 ORTHO05D007303 2.3e-147 526.6 539 53.4
Sc17g0005190 Simmondsia chinensis HOM05D005544 ORTHO05D007303 4.4e-146 522.3 549 62.1
BcaB01g05978 Brassica carinata HOM05D005544 ORTHO05D007303 1.3e-145 520.8 539 52.7
A03p02590 Brassica napus HOM05D005544 ORTHO05D007303 3.2e-144 516.2 540 52.8
BraA03t09620Z Brassica rapa HOM05D005544 ORTHO05D007303 5.4e-144 515.4 541 52.7
Migut.N02122 Erythranthe guttata HOM05D005544 ORTHO05D007303 1.1e-141 507.7 552 53.1
Migut.O00595 Erythranthe guttata HOM05D005544 ORTHO05D007303 3.6e-140 502.7 552 52.0
PSO675G2029 Papaver somniferum HOM05D005544 ORTHO05D007303 6.8e-139 498.4 541 60.8
Hma1.2p1_0358F.1_g134780 Hydrangea macrophylla HOM05D005544 ORTHO05D007303 8.9e-139 498.0 540 61.3
PSO541G2439 Papaver somniferum HOM05D005544 ORTHO05D007303 2.0e-138 496.9 541 60.8
Psat6g168560 Pisum sativum HOM05D005544 ORTHO05D007303 4.4e-138 495.7 550 61.1
SalBow2G1504 Salvia bowleyana HOM05D005544 ORTHO05D007303 2.4e-136 490.0 553 50.5
Actinidia24289 Actinidia chinensis HOM05D005544 ORTHO05D007303 4.1e-136 489.2 541 52.9
unitig_22.g6695 Utricularia gibba HOM05D005544 ORTHO05D007303 7.3e-133 478.4 556 48.0
EL10Ac2g03124 Beta vulgaris HOM05D005544 ORTHO05D007303 1.6e-132 477.2 520 59.4
GSVIVG01011022001 Vitis vinifera HOM05D005544 ORTHO05D007303 3.6e-132 476.1 547 60.5
Aqoxy2G03155 Aquilegia oxysepala HOM05D005544 ORTHO05D007303 6.8e-131 471.9 547 57.4
Peaxi162Scf00017g00211 Petunia axillaris HOM05D005544 ORTHO05D007303 2.4e-123 446.8 554 50.2
SHI20711 Sapria himalayana HOM05D005544 ORTHO05D007303 4.4e-122 442.6 532 49.8
QL12p023536 Quercus lobata HOM05D005544 ORTHO05D007303 4.9e-121 439.1 339 68.1
MBI11_g11983_MAGBIO Magnolia biondii HOM05D005544 ORTHO05D007303 4.2e-120 436.0 540 48.0
CDE07G0705 Ceratophyllum demersum HOM05D005544 ORTHO05D007303 6.4e-113 412.1 538 45.4
ATR0691G265 Amborella trichopoda HOM05D005544 ORTHO05D007303 1.6e-111 407.5 535 45.0
Os07g0224900 Oryza sativa ssp. japonica HOM05D005544 ORTHO05D007303 1.1e-101 374.8 552 42.0
Zm00001eb303580 Zea mays HOM05D005544 ORTHO05D007303 1.1e-96 358.2 556 41.0
Sc17g0005180 Simmondsia chinensis HOM05D005544 ORTHO05D007303 1.4e-91 341.3 400 60.5
TPR.G16943 Trifolium pratense HOM05D005544 ORTHO05D007303 4.5e-90 336.3 545 50.6
Pp3c8_11620 Physcomitrium patens HOM05D005544 ORTHO05D007303 6.7e-78 295.8 535 41.5
SMO119G0317 Selaginella moellendorffii HOM05D005544 ORTHO05D007303 8.2e-76 288.9 534 36.9
HPP92_015605 Vanilla planifolia HOM05D005544 ORTHO05D007303 2.4e-75 287.3 290 52.8
Mapoly0066s0060 Marchantia polymorpha HOM05D005544 ORTHO05D007303 1.0e-73 282.0 532 42.1
Sed0004423 Sechium edule HOM05D005544 ORTHO05D007303 1.0e-70 271.9 425 41.9
SEGI_38002 Sequoiadendron giganteum HOM05D005544 ORTHO05D007303 7.7e-66 255.8 348 40.8
Cre03.g196850 Chlamydomonas reinhardtii HOM05D005544 ORTHO05D007303 2.9e-65 253.8 524 34.4
Hma1.2p1_1992F.1_g310250 Hydrangea macrophylla HOM05D005544 ORTHO05D007303 5.9e-58 229.6 319 44.8
PRCOL_00005139 Prasinoderma coloniale HOM05D005544 ORTHO05D007303 8.3e-44 182.6 529 27.8
COL.COLO4_19838 Corchorus olitorius HOM05D005544 ORTHO05D007303 1.0e-41 175.6 245 46.1
CBR_g11128 Chara braunii HOM05D005544 ORTHO05D007303 1.3e-41 175.3 418 28.0
PGSC0003DMG400036093 Solanum tuberosum HOM05D005544 ORTHO05D007303 1.1e-35 155.6 100 74.0
Hma1.2p1_3416F.1_g335940 Hydrangea macrophylla HOM05D005544 ORTHO05D007303 5.0e-33 146.7 319 35.4
HPP92_015604 Vanilla planifolia HOM05D005544 ORTHO05D007303 1.5e-29 135.2 237 41.8
C04p71990 Brassica napus HOM05D002853 ORTHO05D003030 2.4e-27 127.9 111 55.9
SalBow3G0398 Salvia bowleyana HOM05D005544 ORTHO05D002055 3.0e-25 120.9 179 39.7
Sc17g0005170 Simmondsia chinensis HOM05D005544 ORTHO05D007303 6.6e-25 119.8 102 62.7
Cfa022606 Carpinus fangiana HOM05D005544 ORTHO05D007303 5.6e-24 116.7 533 26.6
BcaC06g36661 Brassica carinata HOM05D005544 ORTHO05D027614 8.1e-23 112.8 119 53.8
SGA_v2.0_scaffold75G25026 Striga asiatica HOM05D005544 ORTHO05D007303 5.1e-17 93.6 143 38.5
BolC7t40575H Brassica oleracea HOM05D005544 ORTHO05D027614 6.6e-17 93.2 157 43.3
A07p00730 Brassica napus HOM05D005544 ORTHO05D027614 2.8e-15 87.8 157 41.4
Nn3g19125 Nelumbo nucifera HOM05D005544 ORTHO05D007303 1.2e-13 82.4 60 63.3
CAN.G111.2 Capsicum annuum HOM05D000002 ORTHO05D000001 2.0e-13 81.6 90 48.9
CAN.G708.1 Capsicum annuum HOM05D005544 ORTHO05D027614 2.0e-13 81.6 71 63.4
SGA_v2.0_scaffold419G51287 Striga asiatica HOM05D005544 ORTHO05D007303 1.2e-10 72.4 96 42.7
SEGI_41146 Sequoiadendron giganteum HOM05D005544 ORTHO05D007303 8.7e-09 66.2 70 45.7
SGA_v2.0_scaffold45G17255 Striga asiatica HOM05D005544 ORTHO05D007303 4.3e-08 63.9 95 38.9
SGA_v2.0_scaffold175G39332 Striga asiatica HOM05D005544 ORTHO05D007303 9.6e-08 62.8 95 36.8


User provided reference genes

Program Settings