Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN13G0006 Fragaria x ananassa HOM05D001887 ORTHO05D006549 0.0e+00 1669.8 877 100.0
FvH4_5g20470 Fragaria vesca HOM05D001887 ORTHO05D006549 0.0e+00 1600.9 880 95.3
FAN18G1605 Fragaria x ananassa HOM05D001887 ORTHO05D006549 0.0e+00 1587.4 875 94.6
RcHm_v2.0_Chr7g0205791 Rosa chinensis HOM05D001887 ORTHO05D006549 0.0e+00 1511.9 880 91.1
Prupe.5G054900 Prunus persica HOM05D001887 ORTHO05D006549 0.0e+00 1339.3 887 81.1
MD06G1046600 Malus domestica HOM05D001887 ORTHO05D006549 0.0e+00 1318.1 903 79.4
CiPaw.11G072100 Carya illinoinensis HOM05D001887 ORTHO05D006549 0.0e+00 1170.2 886 71.4
QL12p008620 Quercus lobata HOM05D001887 ORTHO05D006549 0.0e+00 1169.8 882 71.8
Haze_08360 Corylus avellana HOM05D001887 ORTHO05D006549 0.0e+00 1160.2 888 71.4
Cfa012332 Carpinus fangiana HOM05D001887 ORTHO05D006549 0.0e+00 1159.4 887 71.9
Glyma.11G038500 Glycine max HOM05D001887 ORTHO05D006549 0.0e+00 1124.4 889 69.5
Thecc.03G239300 Theobroma cacao HOM05D001887 ORTHO05D006549 0.0e+00 1122.5 890 69.3
Ciclev10024418m.g Citrus clementina HOM05D001887 ORTHO05D006549 0.0e+00 1111.3 906 68.5
VMungo1215G0420 Vigna mungo HOM05D001887 ORTHO05D006549 0.0e+00 1111.3 888 69.5
Medtr5g013480 Medicago truncatula HOM05D001887 ORTHO05D006549 0.0e+00 1104.7 885 68.9
Potri.001G150400 Populus trichocarpa HOM05D001887 ORTHO05D006549 0.0e+00 1104.0 888 68.2
ClCG09G012670 Citrullus lanatus HOM05D001887 ORTHO05D006549 0.0e+00 1103.2 895 67.4
Lj2g0012346 Lotus japonicus HOM05D001887 ORTHO05D006549 0.0e+00 1101.7 885 68.4
CANSAT21G2194 Cannabis sativa HOM05D001887 ORTHO05D006549 0.0e+00 1095.9 887 69.3
Sed0013079 Sechium edule HOM05D001887 ORTHO05D006549 0.0e+00 1094.3 882 68.5
CSS0023599 Camellia sinensis var. sinensis HOM05D001887 ORTHO05D006549 0.0e+00 1094.0 884 68.9
CsaV3_3G049790 Cucumis sativus L. HOM05D001887 ORTHO05D006549 0.0e+00 1094.0 888 67.5
TWI81G0509 Tripterygium wilfordii HOM05D001887 ORTHO05D006549 0.0e+00 1094.0 893 67.6
Lalb_Chr09g0324141 Lupinus albus HOM05D001887 ORTHO05D006549 0.0e+00 1093.6 885 67.9
Ca_24613_v3 Cicer arietinum L. HOM05D001887 ORTHO05D006549 0.0e+00 1090.9 941 64.6
COL.COLO4_06683 Corchorus olitorius HOM05D001887 ORTHO05D006549 0.0e+00 1088.9 888 68.0
Eucgr.E00349 Eucalyptus grandis HOM05D001887 ORTHO05D006549 0.0e+00 1087.0 883 68.2
Actinidia02198 Actinidia chinensis HOM05D001887 ORTHO05D006549 0.0e+00 1086.6 884 67.6
Manes.01G089700 Manihot esculenta HOM05D001887 ORTHO05D006549 0.0e+00 1086.6 896 68.6
TAR636G0264 Trochodendron aralioides HOM05D001887 ORTHO05D006549 0.0e+00 1082.8 887 68.0
GSVIVG01002051001 Vitis vinifera HOM05D001887 ORTHO05D006549 0.0e+00 1080.9 885 68.6
PGR042G1059 Punica granatum HOM05D001887 ORTHO05D006549 0.0e+00 1077.8 886 66.6
Gohir.D08G182700 Gossypium hirsutum HOM05D001887 ORTHO05D006549 0.0e+00 1077.0 887 68.8
AUR62007171 Chenopodium quinoa HOM05D001887 ORTHO05D006549 1.2e-311 1072.8 884 66.4
MELO3C003338.2 Cucumis melo HOM05D001887 ORTHO05D006549 1.2e-311 1072.8 881 67.1
arahy.Tifrunner.gnm1.ann1.B9CQCD Arachis hypogaea HOM05D001887 ORTHO05D006549 9.0e-311 1070.1 891 67.8
arahy.Tifrunner.gnm1.ann1.HW9JRE Arachis hypogaea HOM05D001887 ORTHO05D006549 9.0e-311 1070.1 891 67.8
Gorai.004G191700 Gossypium raimondii HOM05D001887 ORTHO05D006549 9.0e-311 1070.1 888 68.7
Hund14477 Selenicereus undatus HOM05D001887 ORTHO05D006549 4.6e-310 1067.8 892 67.5
Peaxi162Scf00301g00615 Petunia axillaris HOM05D001887 ORTHO05D006549 1.5e-308 1062.8 881 66.7
PGSC0003DMG400026214 Solanum tuberosum HOM05D001887 ORTHO05D006549 1.6e-307 1059.3 885 66.8
Solyc08g077800.4 Solanum lycopersicum HOM05D001887 ORTHO05D006549 6.1e-307 1057.4 885 66.8
Sopen08g026310 Solanum pennellii HOM05D001887 ORTHO05D006549 1.0e-306 1056.6 885 66.9
Nitab4.5_0004227g0030 Nicotiana tabacum HOM05D001887 ORTHO05D006549 3.4e-305 1051.6 883 66.7
BraA04t17079Z Brassica rapa HOM05D001887 ORTHO05D006549 1.7e-304 1049.3 885 65.3
THA.LOC104807928 Tarenaya hassleriana HOM05D001887 ORTHO05D006549 2.8e-304 1048.5 888 65.8
Rhsim07G0136100 Rhododendron simsii HOM05D001887 ORTHO05D006549 3.7e-304 1048.1 1012 60.0
C04p48230 Brassica napus HOM05D001887 ORTHO05D006549 6.3e-304 1047.3 885 64.9
CAN.G572.14 Capsicum annuum HOM05D001887 ORTHO05D006549 6.3e-304 1047.3 884 66.4
Nitab4.5_0003335g0030 Nicotiana tabacum HOM05D001887 ORTHO05D006549 1.4e-303 1046.2 883 67.2
vmacro00747 Vaccinium macrocarpon HOM05D001887 ORTHO05D006549 1.4e-303 1046.2 887 65.3
BcaC02g08980 Brassica carinata HOM05D001887 ORTHO05D006549 1.8e-303 1045.8 885 64.7
BolC4t26415H Brassica oleracea HOM05D001887 ORTHO05D006549 1.8e-303 1045.8 885 64.7
A04p14190 Brassica napus HOM05D001887 ORTHO05D006549 4.1e-303 1044.6 885 65.1
Thhalv10027633m.g Eutrema salsugineum HOM05D001887 ORTHO05D006549 4.1e-303 1044.6 881 65.0
MBI04_g38561_MAGBIO Magnolia biondii HOM05D001887 ORTHO05D006549 2.0e-302 1042.3 920 63.4
BcaB06g27602 Brassica carinata HOM05D001887 ORTHO05D006549 3.5e-302 1041.6 885 64.2
SpUn0010_0230 Schrenkiella parvula HOM05D001887 ORTHO05D006549 1.0e-301 1040.0 885 64.7
Nn1g00744 Nelumbo nucifera HOM05D001887 ORTHO05D006549 2.3e-301 1038.9 911 64.1
AL7G48280 Arabidopsis lyrata HOM05D001887 ORTHO05D006549 3.9e-301 1038.1 884 65.0
Lj8C277T15 Lonicera japonica HOM05D001887 ORTHO05D006549 5.0e-301 1037.7 888 66.9
AL7G48350 Arabidopsis lyrata HOM05D001887 ORTHO05D006549 1.9e-300 1035.8 886 65.2
Carub.0007s3432 Capsella rubella HOM05D001887 ORTHO05D006549 1.9e-300 1035.8 885 64.7
CARHR213220 Cardamine hirsuta HOM05D001887 ORTHO05D006549 3.3e-300 1035.0 885 65.0
Sp7g00750 Schrenkiella parvula HOM05D001887 ORTHO05D006549 7.3e-300 1033.9 881 64.7
AT5G41150 Arabidopsis thaliana HOM05D001887 ORTHO05D006549 1.2e-299 1033.1 885 64.9
Ah.07g199260 Amaranthus hybridus HOM05D001887 ORTHO05D006549 2.8e-299 1031.9 886 65.5
Duzib205G1274 Durio zibethinus HOM05D001887 ORTHO05D006549 4.7e-299 1031.2 884 65.5
Aqoxy7G00853 Aquilegia oxysepala HOM05D001887 ORTHO05D006549 6.1e-299 1030.8 883 64.6
HanXRQChr01g0016001 Helianthus annuus HOM05D001887 ORTHO05D006549 4.0e-298 1028.1 884 64.7
Cc08_g11250 Coffea canephora HOM05D001887 ORTHO05D006549 9.2e-295 1016.9 882 64.5
ECA246G2103 Erigeron canadensis HOM05D001887 ORTHO05D006549 3.5e-294 1015.0 883 63.9
Aa31LG9G15130 Aethionema arabicum HOM05D001887 ORTHO05D006549 6.0e-294 1014.2 880 63.6
EL10Ac5g12260 Beta vulgaris HOM05D001887 ORTHO05D006549 1.6e-291 1006.1 932 61.9
PSO675G3297 Papaver somniferum HOM05D001887 ORTHO05D006549 8.0e-291 1003.8 881 62.4
DCAR_000656 Daucus carota HOM05D001887 ORTHO05D006549 2.0e-289 999.2 883 62.6
Migut.E01262 Erythranthe guttata HOM05D001887 ORTHO05D006549 1.3e-288 996.5 884 62.6
Migut.E01632 Erythranthe guttata HOM05D001887 ORTHO05D006549 1.3e-288 996.5 884 62.6
Lsat_1_v5_gn_3_15381 Lactuca sativa HOM05D001887 ORTHO05D006549 8.3e-288 993.8 908 61.7
AUR62018833 Chenopodium quinoa HOM05D001887 ORTHO05D006549 1.1e-284 983.4 878 62.8
Os03g0100400 Oryza sativa ssp. japonica HOM05D001887 ORTHO05D006549 1.5e-281 973.0 896 60.8
SGA_v2.0_scaffold6G03161 Striga asiatica HOM05D001887 ORTHO05D006549 1.5e-281 973.0 918 60.6
Zm00001eb208390 Zea mays HOM05D001887 ORTHO05D006549 1.4e-279 966.5 894 60.4
unitig_699.g19770 Utricularia gibba HOM05D001887 ORTHO05D006549 9.2e-279 963.8 881 60.7
HPP92_001389 Vanilla planifolia HOM05D001887 ORTHO05D006549 1.7e-277 959.5 883 58.9
Gohir.A08G162700 Gossypium hirsutum HOM05D001887 ORTHO05D006549 3.0e-269 932.2 814 65.4
CDE02G0676 Ceratophyllum demersum HOM05D001887 ORTHO05D006549 6.4e-256 887.9 881 58.7
Dinv25138 Davidia involucrata HOM05D001887 ORTHO05D006549 1.6e-246 856.7 737 65.3
Psat2g175720 Pisum sativum HOM05D001887 ORTHO05D006549 9.7e-236 820.8 773 60.0
Mapoly0007s0092 Marchantia polymorpha HOM05D001887 ORTHO05D006549 2.8e-235 819.3 957 50.3
AagrBONN_evm.TU.Sc2ySwM_344.3532 Anthoceros agrestis HOM05D001887 ORTHO05D006549 4.8e-235 818.5 899 51.9
Pp3c18_11670 Physcomitrium patens HOM05D001887 ORTHO05D006549 2.5e-228 796.2 941 50.5
MSTRG.13777 Avicennia marina HOM05D001887 ORTHO05D006549 1.7e-227 793.5 884 53.1
SMO118G0017 Selaginella moellendorffii HOM05D001887 ORTHO05D006549 1.4e-226 790.4 896 51.7
Oeu028057.3 Olea europaea HOM05D001887 ORTHO05D006549 1.6e-222 776.9 881 54.6
Phvul.002G001900 Phaseolus vulgaris HOM05D001887 ORTHO05D006549 8.2e-219 764.6 658 65.3
Sabra01G0120200 Salix brachista HOM05D001887 ORTHO05D006549 1.1e-202 711.1 602 65.1
ATR0665G232 Amborella trichopoda HOM05D001887 ORTHO05D006549 3.2e-199 699.5 669 60.7
Hma1.2p1_3159F.1_g333410 Hydrangea macrophylla HOM05D001887 ORTHO05D006549 2.3e-197 693.3 880 50.0
Sc01g0007960 Simmondsia chinensis HOM05D001887 ORTHO05D006549 1.9e-183 647.1 657 58.4
SEGI_01687 Sequoiadendron giganteum HOM05D001887 ORTHO05D006549 4.6e-169 599.4 602 57.6
SalBow1G4075 Salvia bowleyana HOM05D001887 ORTHO05D006549 8.1e-158 562.0 614 54.2
MBI04_g36289_MAGBIO Magnolia biondii HOM05D001887 ORTHO05D006549 1.4e-157 561.2 877 43.6
CBR_g39228 Chara braunii HOM05D001887 ORTHO05D006549 9.0e-133 478.8 361 65.7
MCO16G346 Micromonas commoda HOM05D001887 ORTHO05D006549 1.7e-131 474.6 881 34.4
HPP92_012638 Vanilla planifolia HOM05D001887 ORTHO05D006549 1.5e-124 451.4 305 73.4
SalBow1G0188 Salvia bowleyana HOM05D001887 ORTHO05D006549 5.0e-123 446.4 278 81.7
TPR.G31432 Trifolium pratense HOM05D001887 ORTHO05D006549 5.0e-123 446.4 277 82.3
Cpa.g.c28699.1 Carica papaya HOM05D001887 ORTHO05D006549 4.2e-122 443.4 265 84.5
TPR.G31429 Trifolium pratense HOM05D001887 ORTHO05D006549 3.0e-120 437.2 419 60.4
Cfa026920 Carpinus fangiana HOM05D001887 ORTHO05D006549 4.8e-94 350.1 899 30.3
Cre06.g311400 Chlamydomonas reinhardtii HOM05D001887 ORTHO05D006549 3.0e-88 330.9 1169 28.5
HPP92_013056 Vanilla planifolia HOM05D001887 ORTHO05D006549 1.6e-84 318.5 287 58.9
SHI07797 Sapria himalayana HOM05D001887 ORTHO05D006549 5.9e-84 316.6 231 71.4
PRCOL_00000830 Prasinoderma coloniale HOM05D001887 ORTHO05D006549 4.0e-80 303.9 900 29.2
Atru.chr9.1200 Acer truncatum HOM05D001887 ORTHO05D006549 1.3e-78 298.9 168 88.7
HPP92_027917 Vanilla planifolia HOM05D001887 ORTHO05D006549 1.8e-72 278.5 204 68.1
SEGI_02234 Sequoiadendron giganteum HOM05D001887 ORTHO05D006549 3.4e-71 274.2 192 71.9
HPP92_028226 Vanilla planifolia HOM05D001887 ORTHO05D006549 2.2e-70 271.6 239 61.1
ATR0107G001 Amborella trichopoda HOM05D001887 ORTHO05D006549 1.4e-69 268.9 199 70.4
GSVIVG01002647001 Vitis vinifera HOM05D001887 ORTHO05D006549 2.4e-69 268.1 145 91.7
CBR_g69645 Chara braunii HOM05D001887 ORTHO05D006549 8.3e-62 243.0 172 66.9
HPP92_000025 Vanilla planifolia HOM05D001887 ORTHO05D006549 3.3e-58 231.1 144 77.1
HPP92_000026 Vanilla planifolia HOM05D001887 ORTHO05D006549 9.5e-58 229.6 206 60.7
Cpa.g.sc98.72 Carica papaya HOM05D001887 ORTHO05D006549 1.2e-57 229.2 130 86.2
Atru.chr9.1202 Acer truncatum HOM05D001887 ORTHO05D006549 1.3e-54 219.2 150 76.0
HPP92_028027 Vanilla planifolia HOM05D001887 ORTHO05D006549 1.7e-51 208.8 129 77.5
HPP92_002782 Vanilla planifolia HOM05D001887 ORTHO05D006549 6.8e-48 196.8 129 73.6
Glyma.01G204533 Glycine max HOM05D001887 ORTHO05D006549 8.9e-48 196.4 105 92.4
Sed0025805 Sechium edule HOM05D001887 ORTHO05D006549 1.5e-47 195.7 214 55.6
Atru.chr9.1203 Acer truncatum HOM05D001887 ORTHO05D006549 3.0e-43 181.4 98 89.8
HPP92_028028 Vanilla planifolia HOM05D001887 ORTHO05D006549 6.6e-43 180.3 131 69.5
Psat5g084960 Pisum sativum HOM05D001887 ORTHO05D006549 1.6e-41 175.6 161 60.9
Atru.chr9.1201 Acer truncatum HOM05D001887 ORTHO05D006549 3.6e-41 174.5 308 42.2
MD04G1054800 Malus domestica HOM05D001887 ORTHO05D006549 4.0e-40 171.0 123 74.8
HPP92_028029 Vanilla planifolia HOM05D001887 ORTHO05D006549 1.0e-35 156.4 109 69.7
AagrBONN_evm.TU.Sc2ySwM_362.220 Anthoceros agrestis HOM05D001887 ORTHO05D006549 1.6e-28 132.5 84 73.8
Psat5g140400 Pisum sativum HOM05D001887 ORTHO05D006549 1.9e-26 125.6 75 80.0
Psat0s3354g0040 Pisum sativum HOM05D001887 ORTHO05D006549 1.5e-23 115.9 134 53.0
Psat3g155360 Pisum sativum HOM05D000527 ORTHO05D325619 2.2e-22 112.1 85 63.5
Psat4g195160 Pisum sativum HOM05D000527 ORTHO05D000559 1.6e-20 105.9 64 78.1
CDE11G1156 Ceratophyllum demersum HOM05D001409 ORTHO05D129850 3.4e-15 88.2 42 97.6


User provided reference genes

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