Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN12G4296 Fragaria x ananassa HOM05D004569 ORTHO05D005333 9.2e-75 283.5 146 100.0
FvH4_4g01070 Fragaria vesca HOM05D004569 ORTHO05D005333 6.0e-74 280.8 146 99.3
RcHm_v2.0_Chr6g0280701 Rosa chinensis HOM05D004569 ORTHO05D005333 4.0e-62 241.5 145 85.5
RcHm_v2.0_Chr4g0387641 Rosa chinensis HOM05D004569 ORTHO05D005333 5.3e-62 241.1 145 84.8
FvH4_5g27570 Fragaria vesca HOM05D004569 ORTHO05D005333 6.4e-60 234.2 143 84.6
FAN13G2556 Fragaria x ananassa HOM05D004569 ORTHO05D005333 2.7e-50 202.2 134 80.6
FAN18G3311 Fragaria x ananassa HOM05D004569 ORTHO05D005333 3.7e-47 191.8 143 74.1
MD13G1198900 Malus domestica HOM05D004569 ORTHO05D005333 6.3e-31 137.9 154 53.9
CiPaw.01G195800 Carya illinoinensis HOM05D004569 ORTHO05D005333 1.4e-30 136.7 142 53.5
Potri.005G067600 Populus trichocarpa HOM05D004569 ORTHO05D005333 1.2e-29 133.7 139 53.2
Prupe.1G020700 Prunus persica HOM05D004569 ORTHO05D005333 1.1e-27 127.1 152 48.0
AT5G62950 Arabidopsis thaliana HOM05D004569 ORTHO05D005333 4.2e-27 125.2 144 47.9
CANSAT78G0168 Cannabis sativa HOM05D004569 ORTHO05D005333 7.2e-27 124.4 148 47.3
Haze_03750 Corylus avellana HOM05D004569 ORTHO05D005333 1.2e-26 123.6 129 51.2
AL8G39970 Arabidopsis lyrata HOM05D004569 ORTHO05D005333 3.6e-26 122.1 142 47.2
Cfa006984 Carpinus fangiana HOM05D004569 ORTHO05D005333 6.1e-26 121.3 118 50.8
THA.LOC104827037 Tarenaya hassleriana HOM05D004569 ORTHO05D005333 1.8e-25 119.8 149 47.0
Atru.chr4.2374 Acer truncatum HOM05D004569 ORTHO05D005333 2.3e-25 119.4 159 43.4
Aa31LG11G680 Aethionema arabicum HOM05D004569 ORTHO05D005333 3.0e-25 119.0 150 44.0
Medtr7g034585 Medicago truncatula HOM05D004569 ORTHO05D005333 3.9e-25 118.6 149 47.0
Gohir.A02G034100 Gossypium hirsutum HOM05D004569 ORTHO05D005333 5.1e-25 118.2 153 43.1
Gohir.D02G040900 Gossypium hirsutum HOM05D004569 ORTHO05D005333 6.7e-25 117.9 149 44.3
Nn1g01867 Nelumbo nucifera HOM05D004569 ORTHO05D005333 6.7e-25 117.9 148 46.6
Carub.0004s0755 Capsella rubella HOM05D004569 ORTHO05D005333 1.1e-24 117.1 147 44.2
CARHR276760 Cardamine hirsuta HOM05D004569 ORTHO05D005333 1.1e-24 117.1 145 43.4
Sc19g0003960 Simmondsia chinensis HOM05D004569 ORTHO05D005333 1.1e-24 117.1 148 46.6
TAR365G0299 Trochodendron aralioides HOM05D004569 ORTHO05D005333 1.5e-24 116.7 148 43.9
AL3G51140 Arabidopsis lyrata HOM05D004569 ORTHO05D005333 2.0e-24 116.3 143 45.5
Dinv07545 Davidia involucrata HOM05D004569 ORTHO05D005333 2.0e-24 116.3 143 44.1
Thhalv10005100m.g Eutrema salsugineum HOM05D004569 ORTHO05D005333 2.6e-24 115.9 144 47.9
Manes.02G208200 Manihot esculenta HOM05D004569 ORTHO05D005333 4.4e-24 115.2 119 51.3
Thhalv10000370m.g Eutrema salsugineum HOM05D004569 ORTHO05D005333 5.7e-24 114.8 132 45.5
Gorai.005G045300 Gossypium raimondii HOM05D004569 ORTHO05D005333 5.7e-24 114.8 145 43.4
Phvul.001G230900 Phaseolus vulgaris HOM05D004569 ORTHO05D005333 5.7e-24 114.8 150 44.0
Sed0021164 Sechium edule HOM05D004569 ORTHO05D005333 7.4e-24 114.4 141 47.5
arahy.Tifrunner.gnm1.ann1.SFA2KC Arachis hypogaea HOM05D004569 ORTHO05D005333 1.3e-23 113.6 120 50.0
CSS0021073 Camellia sinensis var. sinensis HOM05D004569 ORTHO05D005333 1.3e-23 113.6 130 46.9
Psat3g163880 Pisum sativum HOM05D004569 ORTHO05D005333 1.3e-23 113.6 143 42.7
Lj6g0017152 Lotus japonicus HOM05D004569 ORTHO05D005333 2.2e-23 112.8 155 41.9
Hund09493 Selenicereus undatus HOM05D004569 ORTHO05D005333 2.2e-23 112.8 149 40.9
arahy.Tifrunner.gnm1.ann1.NDW3GA Arachis hypogaea HOM05D004569 ORTHO05D005333 2.8e-23 112.5 143 44.1
CSS0011446 Camellia sinensis var. sinensis HOM05D004569 ORTHO05D005333 2.8e-23 112.5 135 46.7
HanXRQChr05g0158611 Helianthus annuus HOM05D004569 ORTHO05D005333 2.8e-23 112.5 118 47.5
Carub.0008s2366 Capsella rubella HOM05D004569 ORTHO05D005333 3.7e-23 112.1 148 42.6
ClCG06G006470 Citrullus lanatus HOM05D004569 ORTHO05D005333 3.7e-23 112.1 151 42.4
PSO832G4509 Papaver somniferum HOM05D004569 ORTHO05D005333 3.7e-23 112.1 153 42.5
Ciclev10006087m.g Citrus clementina HOM05D004569 ORTHO05D005333 8.2e-23 110.9 150 44.7
Lj5g0008299 Lotus japonicus HOM05D004569 ORTHO05D005333 8.2e-23 110.9 148 44.6
Glyma.18G039600 Glycine max HOM05D004569 ORTHO05D005333 1.4e-22 110.2 149 45.0
Duzib052G0452 Durio zibethinus HOM05D004569 ORTHO05D005333 1.8e-22 109.8 134 43.3
Lalb_Chr06g0161741 Lupinus albus HOM05D004569 ORTHO05D005333 1.8e-22 109.8 133 46.6
GSVIVG01036653001 Vitis vinifera HOM05D004569 ORTHO05D005333 1.8e-22 109.8 118 48.3
Aqoxy5G00407 Aquilegia oxysepala HOM05D004569 ORTHO05D005333 2.4e-22 109.4 133 44.4
Glyma.11G217000 Glycine max HOM05D004569 ORTHO05D005333 2.4e-22 109.4 157 42.0
SGA_v2.0_scaffold45G17132 Striga asiatica HOM05D004044 ORTHO05D005333 2.4e-22 109.4 136 44.1
TWI63G1720 Tripterygium wilfordii HOM05D004569 ORTHO05D005333 2.4e-22 109.4 149 42.3
ECA246G0155 Erigeron canadensis HOM05D004569 ORTHO05D005333 3.1e-22 109.0 119 47.1
TPR.G14863 Trifolium pratense HOM05D004569 ORTHO05D005333 3.1e-22 109.0 150 44.7
VMungo1383G2501 Vigna mungo HOM05D004569 ORTHO05D005333 3.1e-22 109.0 147 42.9
Medtr6g045613 Medicago truncatula HOM05D004569 ORTHO05D005333 4.1e-22 108.6 92 57.6
PSO210G1425 Papaver somniferum HOM05D004569 ORTHO05D005333 5.3e-22 108.2 134 45.5
Thecc.04G238000 Theobroma cacao HOM05D004569 ORTHO05D005333 5.3e-22 108.2 148 39.9
Ca_17658_v3 Cicer arietinum L. HOM05D004569 ORTHO05D005333 9.1e-22 107.5 149 43.6
HanXRQChr06g0173001 Helianthus annuus HOM05D004569 ORTHO05D005333 9.1e-22 107.5 119 46.2
Peaxi162Scf00192g01617 Petunia axillaris HOM05D004569 ORTHO05D005333 1.5e-21 106.7 151 41.7
Sp2g26090 Schrenkiella parvula HOM05D004569 ORTHO05D005333 1.5e-21 106.7 141 43.3
vmacro17995 Vaccinium macrocarpon HOM05D004569 ORTHO05D005333 1.5e-21 106.7 132 44.7
CSS0049273 Camellia sinensis var. sinensis HOM05D004569 ORTHO05D005333 2.6e-21 105.9 131 45.8
Duzib052G0972 Durio zibethinus HOM05D004569 ORTHO05D005333 3.4e-21 105.5 151 41.1
Nitab4.5_0000321g0230 Nicotiana tabacum HOM05D004569 ORTHO05D005333 5.9e-21 104.8 149 40.9
BcaB07g29675 Brassica carinata HOM05D004569 ORTHO05D005333 7.7e-21 104.4 144 43.1
MELO3C014285.2 Cucumis melo HOM05D004569 ORTHO05D005333 7.7e-21 104.4 92 57.6
VMungo1383G1439 Vigna mungo HOM05D004569 ORTHO05D005333 7.7e-21 104.4 160 38.8
CAN.G135.33 Capsicum annuum HOM05D004569 ORTHO05D005333 1.0e-20 104.0 121 44.6
Oeu058961.1 Olea europaea HOM05D004569 ORTHO05D005333 1.0e-20 104.0 148 41.9
AUR62028629 Chenopodium quinoa HOM05D004569 ORTHO05D005333 1.3e-20 103.6 150 39.3
CsaV3_2G013430 Cucumis sativus L. HOM05D004569 ORTHO05D005333 1.3e-20 103.6 147 43.5
SalBow2G1663 Salvia bowleyana HOM05D004569 ORTHO05D005333 1.3e-20 103.6 121 42.1
SGA_v2.0_scaffold353G49718 Striga asiatica HOM05D004569 ORTHO05D005333 1.3e-20 103.6 140 43.6
Lsat_1_v5_gn_1_12980 Lactuca sativa HOM05D004569 ORTHO05D005333 1.7e-20 103.2 128 43.0
SalBow8G0974 Salvia bowleyana HOM05D004569 ORTHO05D005333 1.7e-20 103.2 121 42.1
BcaC03g18183 Brassica carinata HOM05D004569 ORTHO05D005333 2.9e-20 102.4 143 44.1
Cc03_g04240 Coffea canephora HOM05D004569 ORTHO05D005333 2.9e-20 102.4 142 40.8
MBI18_g09782_MAGBIO Magnolia biondii HOM05D004569 ORTHO05D005333 2.9e-20 102.4 120 45.8
C02p62490 Brassica napus HOM05D004569 ORTHO05D005333 5.0e-20 101.7 142 43.7
BolC2t12308H Brassica oleracea HOM05D004569 ORTHO05D005333 5.0e-20 101.7 142 43.7
Eucgr.H03416 Eucalyptus grandis HOM05D004569 ORTHO05D005333 5.0e-20 101.7 131 47.3
Nitab4.5_0004412g0030 Nicotiana tabacum HOM05D004569 ORTHO05D005333 5.0e-20 101.7 148 41.9
BcaC08g46303 Brassica carinata HOM05D004569 ORTHO05D005333 6.5e-20 101.3 145 42.8
Psat3g162000 Pisum sativum HOM05D004569 ORTHO05D005333 6.5e-20 101.3 94 50.0
PGR004G1818 Punica granatum HOM05D004569 ORTHO05D005333 8.5e-20 100.9 134 45.5
BolC6t39293H Brassica oleracea HOM05D004569 ORTHO05D005333 1.1e-19 100.5 145 42.1
unitig_748.g7305 Utricularia gibba HOM05D004569 ORTHO05D005333 1.4e-19 100.1 116 44.0
C06p41320 Brassica napus HOM05D004569 ORTHO05D005333 1.9e-19 99.8 144 42.4
Oeu042815.1 Olea europaea HOM05D004569 ORTHO05D005333 1.9e-19 99.8 147 40.1
A02p42590 Brassica napus HOM05D004569 ORTHO05D005333 2.5e-19 99.4 141 42.6
BraA02t09187Z Brassica rapa HOM05D004569 ORTHO05D005333 2.5e-19 99.4 141 42.6
PGR031G3247 Punica granatum HOM05D004569 ORTHO05D005333 2.5e-19 99.4 153 43.8
Sabra05G0055500 Salix brachista HOM05D004569 ORTHO05D005333 2.5e-19 99.4 89 52.8
Rhsim01G0189100 Rhododendron simsii HOM05D004569 ORTHO05D005333 3.2e-19 99.0 145 42.1
CDE05G0131 Ceratophyllum demersum HOM05D004569 ORTHO05D005333 4.2e-19 98.6 119 42.9
Ah.02g110960 Amaranthus hybridus HOM05D000936 ORTHO05D001411 5.5e-19 98.2 134 41.0
BcaB04g19957 Brassica carinata HOM05D004569 ORTHO05D005333 3.6e-18 95.5 145 40.0
Peaxi162Scf00904g00217 Petunia axillaris HOM05D004569 ORTHO05D005333 4.7e-18 95.1 147 39.5
Zm00001eb076250 Zea mays HOM05D004569 ORTHO05D005333 1.0e-17 94.0 148 37.8
Zm00001eb076270 Zea mays HOM05D004569 ORTHO05D005333 1.0e-17 94.0 148 37.8
Atru.chr4.2398 Acer truncatum HOM05D004569 ORTHO05D005333 1.4e-17 93.6 94 45.7
Mapoly0090s0037 Marchantia polymorpha HOM05D004569 ORTHO05D005333 2.3e-17 92.8 119 40.3
Lsat_1_v5_gn_6_95400 Lactuca sativa HOM05D004569 ORTHO05D005333 3.0e-17 92.4 106 44.3
Os12g0488800 Oryza sativa ssp. japonica HOM05D004569 ORTHO05D005333 3.0e-17 92.4 93 48.4
Sopen11g003670 Solanum pennellii HOM05D004569 ORTHO05D005333 3.0e-17 92.4 164 36.0
BcaC04g23378 Brassica carinata HOM05D004569 ORTHO05D005333 3.9e-17 92.0 139 36.7
Pp3c21_14050 Physcomitrium patens HOM05D004569 ORTHO05D005333 5.2e-17 91.7 146 34.9
C09p08990 Brassica napus HOM05D004569 ORTHO05D005333 8.8e-17 90.9 138 37.7
BolC9t53811H Brassica oleracea HOM05D004569 ORTHO05D005333 8.8e-17 90.9 138 37.7
Dinv40544 Davidia involucrata HOM05D004569 ORTHO05D005333 1.1e-16 90.5 87 48.3
BcaC01g02544 Brassica carinata HOM05D004569 ORTHO05D005333 1.5e-16 90.1 133 39.8
C03p63650 Brassica napus HOM05D004569 ORTHO05D005333 1.5e-16 90.1 133 39.8
BolC3t18624H Brassica oleracea HOM05D004569 ORTHO05D005333 1.5e-16 90.1 133 39.8
Medtr6g045603 Medicago truncatula HOM05D004569 ORTHO05D005333 1.5e-16 90.1 146 39.7
Migut.B00535 Erythranthe guttata HOM05D004569 ORTHO05D005333 2.0e-16 89.7 133 36.1
Zm00001eb076290 Zea mays HOM05D004569 ORTHO05D005333 2.0e-16 89.7 142 37.3
A09p07940 Brassica napus HOM05D004569 ORTHO05D005333 3.3e-16 89.0 147 36.7
BraA09t36445Z Brassica rapa HOM05D004569 ORTHO05D005333 3.3e-16 89.0 146 37.0
Zm00001eb310390 Zea mays HOM05D004569 ORTHO05D005333 4.4e-16 88.6 139 37.4
Rhsim04G0197700 Rhododendron simsii HOM05D004569 ORTHO05D005333 5.7e-16 88.2 132 42.4
Atru.chr5.182 Acer truncatum HOM05D004569 ORTHO05D005333 2.8e-15 85.9 120 41.7
Hma1.2p1_0602F.1_g187570 Hydrangea macrophylla HOM05D004569 ORTHO05D005333 3.7e-15 85.5 83 48.2
ATR0829G086 Amborella trichopoda HOM05D004569 ORTHO05D005333 4.8e-15 85.1 133 37.6
SalBow1G3047 Salvia bowleyana HOM05D004569 ORTHO05D005333 6.3e-15 84.7 94 42.6
PGSC0003DMG400027326 Solanum tuberosum HOM05D004569 ORTHO05D005333 8.2e-15 84.3 157 36.3
HPP92_022914 Vanilla planifolia HOM05D004569 ORTHO05D005333 8.2e-15 84.3 151 33.8
Nitab4.5_0004743g0130 Nicotiana tabacum HOM05D004569 ORTHO05D005333 9.1e-14 80.9 139 38.1
TAR636G3114 Trochodendron aralioides HOM05D004569 ORTHO05D005333 2.0e-13 79.7 106 43.4
BraA06t25922Z Brassica rapa HOM05D004569 ORTHO05D005333 1.0e-12 77.4 120 39.2
Aqoxy2G03457 Aquilegia oxysepala HOM05D004569 ORTHO05D005333 1.3e-12 77.0 82 41.5
BcaB02g09711 Brassica carinata HOM05D004569 ORTHO05D005333 1.3e-12 77.0 136 35.3
CSS0028808 Camellia sinensis var. sinensis HOM05D004569 ORTHO05D005333 1.3e-12 77.0 128 39.1
Dinv07599 Davidia involucrata HOM05D004569 ORTHO05D005333 2.2e-12 76.3 75 45.3
COL.COLO4_21559 Corchorus olitorius HOM05D004569 ORTHO05D005333 4.2e-11 72.0 84 46.4
AT3G28956 Arabidopsis thaliana HOM05D004569 ORTHO05D005333 1.2e-10 70.5 66 51.5
AagrBONN_evm.TU.Sc2ySwM_228.788 Anthoceros agrestis HOM05D004569 ORTHO05D005333 3.6e-10 68.9 146 32.2
SMO343G0078 Selaginella moellendorffii HOM05D004569 ORTHO05D005333 4.7e-10 68.6 152 32.2
AUR62033084 Chenopodium quinoa HOM05D004569 ORTHO05D005333 5.2e-09 65.1 92 35.9
Hma1.2p1_0549F.1_g176970 Hydrangea macrophylla HOM05D004569 ORTHO05D005333 9.7e-08 60.8 64 48.4
SEGI_13490 Sequoiadendron giganteum HOM05D004569 ORTHO05D000001 2.2e-07 59.7 78 39.7
arahy.Tifrunner.gnm1.ann1.LSLG48 Arachis hypogaea HOM05D001291 ORTHO05D005333 2.8e-07 59.3 75 40.0
CBR_g19683 Chara braunii HOM05D004569 ORTHO05D005333 4.8e-07 58.5 90 36.7
SEGI_07191 Sequoiadendron giganteum HOM05D004569 ORTHO05D005333 2.4e-06 56.2 69 40.6
Phvul.001G219600 Phaseolus vulgaris HOM05D004569 ORTHO05D005333 9.1e-06 54.3 46 56.5


User provided reference genes

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