Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN12G3868 Fragaria x ananassa HOM05D004873 ORTHO05D006122 0.0e+00 1433.7 918 100.0
FvH4_4g34571 Fragaria vesca HOM05D004873 ORTHO05D006122 0.0e+00 1414.1 919 98.7
FAN22G1569 Fragaria x ananassa HOM05D004873 ORTHO05D006122 0.0e+00 1325.5 925 93.4
FAN17G2310 Fragaria x ananassa HOM05D004873 ORTHO05D006122 0.0e+00 1285.0 918 93.0
RcHm_v2.0_Chr4g0443951 Rosa chinensis HOM05D004873 ORTHO05D006122 0.0e+00 1174.1 946 82.3
FAN07G2437 Fragaria x ananassa HOM05D004873 ORTHO05D006122 0.0e+00 1116.3 765 95.7
TWI18G0605 Tripterygium wilfordii HOM05D004873 ORTHO05D006122 3.2e-213 746.1 956 61.5
Duzib251G0436 Durio zibethinus HOM05D004873 ORTHO05D006122 1.5e-210 737.3 955 60.2
MD13G1091200 Malus domestica HOM05D004873 ORTHO05D006122 3.1e-208 729.6 780 69.0
Prupe.1G254700 Prunus persica HOM05D004873 ORTHO05D006122 2.4e-205 719.9 776 67.8
Atru.chr11.2013 Acer truncatum HOM05D004873 ORTHO05D006122 2.1e-204 716.8 962 57.5
TWI36G0907 Tripterygium wilfordii HOM05D004873 ORTHO05D006122 6.0e-204 715.3 883 64.1
TWI75G0297 Tripterygium wilfordii HOM05D004873 ORTHO05D006122 1.3e-203 714.1 965 61.3
Duzib248G0479 Durio zibethinus HOM05D004873 ORTHO05D006122 1.9e-202 710.3 895 60.2
Ciclev10030647m.g Citrus clementina HOM05D004873 ORTHO05D006122 3.6e-201 706.1 947 60.2
MD16G1091700 Malus domestica HOM05D004873 ORTHO05D006122 4.3e-194 682.6 778 65.8
MELO3C012001.2 Cucumis melo HOM05D004873 ORTHO05D006122 2.2e-190 670.2 1001 54.9
GSVIVG01020233001 Vitis vinifera HOM05D004873 ORTHO05D006122 2.4e-189 666.8 839 62.8
Nn4g22808 Nelumbo nucifera HOM05D004873 ORTHO05D006122 3.2e-189 666.4 940 57.3
CANSAT01G1467 Cannabis sativa HOM05D004873 ORTHO05D006122 2.1e-188 663.7 917 58.7
CiPaw.05G150500 Carya illinoinensis HOM05D004873 ORTHO05D006122 1.0e-187 661.4 884 58.0
Haze_12170 Corylus avellana HOM05D004873 ORTHO05D006122 3.3e-186 656.4 968 56.7
ClCG05G025280 Citrullus lanatus HOM05D004873 ORTHO05D006122 9.9e-183 644.8 1068 51.7
COL.COLO4_36971 Corchorus olitorius HOM05D004873 ORTHO05D006122 1.4e-181 641.0 862 51.3
Hma1.2p1_0160F.1_g070740 Hydrangea macrophylla HOM05D004873 ORTHO05D006122 1.9e-181 640.6 909 57.8
Cfa009139 Carpinus fangiana HOM05D004873 ORTHO05D006122 3.1e-176 623.2 949 56.0
CSS0025142 Camellia sinensis var. sinensis HOM05D004873 ORTHO05D006122 1.2e-175 621.3 982 55.5
Aqoxy3G02990_Aqoxy3G02991 Aquilegia oxysepala HOM05D004873 ORTHO05D006122 7.6e-175 618.6 915 56.4
Gorai.005G183000 Gossypium raimondii HOM05D004873 ORTHO05D006122 7.6e-175 618.6 901 57.9
TAR622G0484 Trochodendron aralioides HOM05D004873 ORTHO05D006122 1.0e-174 618.2 928 54.7
Eucgr.B03347 Eucalyptus grandis HOM05D004873 ORTHO05D006122 4.9e-174 615.9 906 56.6
MBI15_g36943_MAGBIO Magnolia biondii HOM05D004873 ORTHO05D006122 4.9e-174 615.9 912 56.6
QL03p061438 Quercus lobata HOM05D004873 ORTHO05D006122 1.4e-173 614.4 790 61.6
Sed0006362 Sechium edule HOM05D004873 ORTHO05D006122 1.4e-173 614.4 786 58.8
Gohir.D02G163000 Gossypium hirsutum HOM05D004873 ORTHO05D006122 2.5e-173 613.6 890 57.5
Manes.13G031000 Manihot esculenta HOM05D004873 ORTHO05D006122 1.2e-172 611.3 782 59.2
Potri.008G147100 Populus trichocarpa HOM05D004873 ORTHO05D006122 6.7e-171 605.5 807 54.6
Dinv24864 Davidia involucrata HOM05D004873 ORTHO05D006122 9.6e-170 601.7 798 56.3
TAR374G0217 Trochodendron aralioides HOM05D004873 ORTHO05D006122 8.2e-169 598.6 974 54.3
HPP92_019184 Vanilla planifolia HOM05D004873 ORTHO05D006122 8.2e-169 598.6 904 52.8
Medtr5g034430 Medicago truncatula HOM05D004873 ORTHO05D006122 1.4e-168 597.8 957 53.2
Ca_04600_v3 Cicer arietinum L. HOM05D004873 ORTHO05D006122 1.3e-166 591.3 911 50.9
TPR.G13590 Trifolium pratense HOM05D004873 ORTHO05D006122 2.9e-166 590.1 879 54.0
Actinidia01706 Actinidia chinensis HOM05D004873 ORTHO05D006122 5.0e-166 589.3 957 54.5
CsaV3_5G031610 Cucumis sativus L. HOM05D004873 ORTHO05D006122 8.4e-166 588.6 776 60.6
Sabra10G0067000 Salix brachista HOM05D004873 ORTHO05D006122 8.4e-166 588.6 798 58.6
Potri.010G094700 Populus trichocarpa HOM05D004873 ORTHO05D006122 2.5e-165 587.0 886 56.3
Hma1.2p1_0867F.1_g230230 Hydrangea macrophylla HOM05D004873 ORTHO05D006122 4.6e-164 582.8 815 56.9
arahy.Tifrunner.gnm1.ann1.QGK7DH Arachis hypogaea HOM05D004873 ORTHO05D006122 6.1e-164 582.4 1002 52.0
arahy.Tifrunner.gnm1.ann1.SJZ9IC Arachis hypogaea HOM05D004873 ORTHO05D006122 1.8e-163 580.9 1025 52.7
Oeu055452.2 Olea europaea HOM05D004873 ORTHO05D006122 4.8e-161 572.8 1028 47.0
Thecc.02G248000 Theobroma cacao HOM05D004873 ORTHO05D006122 1.5e-159 567.8 876 56.6
Gohir.A03G140300 Gossypium hirsutum HOM05D004873 ORTHO05D006122 2.6e-159 567.0 782 60.9
Dinv15307 Davidia involucrata HOM05D004873 ORTHO05D006122 3.8e-158 563.1 784 59.3
DCAR_026543 Daucus carota HOM05D004873 ORTHO05D006122 5.5e-157 559.3 974 47.7
SGA_v2.0_scaffold165G38251 Striga asiatica HOM05D004873 ORTHO05D006122 6.1e-156 555.8 936 50.1
Lalb_Chr16g0392411 Lupinus albus HOM05D004873 ORTHO05D006122 3.9e-155 553.1 779 57.8
Cc11_g14610 Coffea canephora HOM05D004873 ORTHO05D006122 1.1e-154 551.6 927 50.3
VMungo1215G2983 Vigna mungo HOM05D004873 ORTHO05D006122 1.7e-153 547.7 961 51.8
vmacro01183 Vaccinium macrocarpon HOM05D004873 ORTHO05D006122 2.2e-153 547.4 935 52.1
DCAR_024143 Daucus carota HOM05D004873 ORTHO05D006122 6.9e-152 542.3 947 48.9
BolC1t03651H Brassica oleracea HOM05D004873 ORTHO05D006122 2.0e-151 540.8 948 53.8
Glyma.01G031400 Glycine max HOM05D004873 ORTHO05D006122 4.5e-151 539.7 945 50.5
Psat2g106600 Pisum sativum HOM05D004873 ORTHO05D006122 5.9e-151 539.3 783 55.6
AUR62005371 Chenopodium quinoa HOM05D004873 ORTHO05D006122 1.0e-150 538.5 801 51.6
Peaxi162Scf00338g00218 Petunia axillaris HOM05D004873 ORTHO05D006122 1.0e-150 538.5 941 50.6
PGSC0003DMG400030977 Solanum tuberosum HOM05D004873 ORTHO05D006122 1.0e-150 538.5 922 52.5
C01p36930 Brassica napus HOM05D004873 ORTHO05D006122 1.2e-148 531.6 936 51.9
Sc11g0001220 Simmondsia chinensis HOM05D004873 ORTHO05D006122 2.1e-148 530.8 767 57.6
PSO832G2005 Papaver somniferum HOM05D004873 ORTHO05D006122 1.4e-147 528.1 918 53.3
Cpa.g.sc69.19 Carica papaya HOM05D004873 ORTHO05D006122 2.3e-147 527.3 895 47.6
BcaC09g49418 Brassica carinata HOM05D004873 ORTHO05D006122 8.8e-147 525.4 936 53.2
CAN.G376.10 Capsicum annuum HOM05D004873 ORTHO05D006122 8.8e-147 525.4 847 51.8
Migut.L01408 Erythranthe guttata HOM05D004873 ORTHO05D006122 8.8e-147 525.4 909 50.8
Lj2g0008447 Lotus japonicus HOM05D004873 ORTHO05D006122 1.1e-146 525.0 835 53.9
Sp2g04470 Schrenkiella parvula HOM05D004873 ORTHO05D006122 1.1e-146 525.0 951 53.3
AL2G16455 Arabidopsis lyrata HOM05D004873 ORTHO05D006122 1.5e-146 524.6 933 51.3
BraA01t02979Z Brassica rapa HOM05D004873 ORTHO05D006122 1.5e-146 524.6 937 53.4
HPP92_019185 Vanilla planifolia HOM05D004873 ORTHO05D006122 2.2e-145 520.8 904 49.1
Sopen05g001620 Solanum pennellii HOM05D004873 ORTHO05D006122 2.8e-145 520.4 861 53.0
Lj6A805G39 Lonicera japonica HOM05D004873 ORTHO05D006122 6.3e-145 519.2 1034 45.9
A01p29150 Brassica napus HOM05D004873 ORTHO05D006122 1.1e-144 518.5 937 52.9
PSO063G1237 Papaver somniferum HOM05D004873 ORTHO05D006122 1.8e-144 517.7 912 53.0
Phvul.002G071900 Phaseolus vulgaris HOM05D004873 ORTHO05D006122 1.6e-143 514.6 791 55.2
Thhalv10023242m.g Eutrema salsugineum HOM05D004873 ORTHO05D006122 2.6e-143 513.8 894 55.4
Rhsim12G0047400 Rhododendron simsii HOM05D004873 ORTHO05D006122 4.5e-143 513.1 945 51.0
Lalb_Chr05g0228131 Lupinus albus HOM05D004873 ORTHO05D006122 1.3e-142 511.5 783 55.2
C04p26690 Brassica napus HOM05D004873 ORTHO05D006122 1.7e-142 511.1 933 51.2
BolC4t24137H Brassica oleracea HOM05D004873 ORTHO05D006122 1.7e-142 511.1 933 51.2
Lsat_1_v5_gn_4_6981 Lactuca sativa HOM05D004873 ORTHO05D006122 5.5e-141 506.1 910 50.4
Carub.0002s0504 Capsella rubella HOM05D004873 ORTHO05D006122 2.1e-140 504.2 895 50.3
Glyma.02G034300 Glycine max HOM05D004873 ORTHO05D006122 3.0e-139 500.4 777 52.8
BcaC02g10690 Brassica carinata HOM05D004873 ORTHO05D006122 6.7e-139 499.2 964 49.6
PGR102G2017 Punica granatum HOM05D004873 ORTHO05D006122 1.3e-137 495.0 891 50.7
ATR0691G293 Amborella trichopoda HOM05D004873 ORTHO05D006122 2.8e-137 493.8 964 47.8
HanXRQChr12g0383471 Helianthus annuus HOM05D004873 ORTHO05D006122 4.1e-136 490.0 960 49.4
BcaC06g31808 Brassica carinata HOM05D004873 ORTHO05D006122 9.1e-136 488.8 931 49.5
ECA199G0004 Erigeron canadensis HOM05D004873 ORTHO05D006122 8.5e-134 482.3 968 49.2
Lalb_Chr05g0216921 Lupinus albus HOM05D004873 ORTHO05D006122 8.5e-134 482.3 737 50.1
CARHR052750 Cardamine hirsuta HOM05D004873 ORTHO05D006122 1.6e-132 478.0 799 52.3
FvH4_4g34570 Fragaria vesca HOM05D004873 ORTHO05D006122 1.0e-131 475.3 287 88.9
BcaB04g20256 Brassica carinata HOM05D004873 ORTHO05D006122 1.4e-131 474.9 923 51.2
MSTRG.7893 Avicennia marina HOM05D004873 ORTHO05D006122 3.0e-131 473.8 769 49.8
Aa31LG2G10110 Aethionema arabicum HOM05D004873 ORTHO05D006122 7.5e-130 469.2 975 48.4
Nitab4.5_0000113g0270 Nicotiana tabacum HOM05D004873 ORTHO05D006122 4.8e-129 466.5 911 42.4
Zm00001eb042420 Zea mays HOM05D004873 ORTHO05D006122 2.7e-127 460.7 792 52.4
AUR62014033 Chenopodium quinoa HOM05D004873 ORTHO05D006122 1.3e-126 458.4 797 48.3
FAN12G0889 Fragaria x ananassa HOM05D004873 ORTHO05D006122 5.0e-126 456.4 259 93.1
TAR629G1177 Trochodendron aralioides HOM05D004873 ORTHO05D006122 1.4e-123 448.4 798 46.6
AT1G60200 Arabidopsis thaliana HOM05D004873 ORTHO05D006122 4.4e-122 443.4 777 52.4
THA.LOC104819514 Tarenaya hassleriana HOM05D004873 ORTHO05D006122 2.8e-121 440.7 968 47.2
SEGI_30430 Sequoiadendron giganteum HOM05D004873 ORTHO05D006122 8.3e-121 439.1 794 53.1
THA.LOC104819547 Tarenaya hassleriana HOM05D004873 ORTHO05D006122 7.7e-119 432.6 880 48.9
EL10Ac6g13668 Beta vulgaris HOM05D004873 ORTHO05D006122 1.0e-118 432.2 984 46.1
Hund05991 Selenicereus undatus HOM05D004873 ORTHO05D006122 5.6e-117 426.4 875 50.3
unitig_27.g25195 Utricularia gibba HOM05D004873 ORTHO05D006122 4.7e-116 423.3 924 43.6
Ah.03g132650 Amaranthus hybridus HOM05D004873 ORTHO05D006122 2.4e-112 411.0 905 45.4
Pp3c25_3310 Physcomitrium patens HOM05D004873 ORTHO05D006122 9.5e-101 372.5 892 46.0
Actinidia08168 Actinidia chinensis HOM05D004873 ORTHO05D006122 7.1e-96 356.3 737 50.5
Zm00001eb179020 Zea mays HOM05D004873 ORTHO05D006122 5.2e-91 340.1 773 48.4
Pp3c16_19090 Physcomitrium patens HOM05D004873 ORTHO05D006122 2.0e-90 338.2 829 44.4
Mapoly0148s0032 Marchantia polymorpha HOM05D004873 ORTHO05D006122 6.4e-89 333.2 862 46.4
Oeu056734.1 Olea europaea HOM05D004873 ORTHO05D006122 7.1e-88 329.7 838 41.5
C05p51270 Brassica napus HOM05D004873 ORTHO05D006122 5.6e-77 293.5 582 54.3
Nitab4.5_0010954g0010 Nicotiana tabacum HOM05D004873 ORTHO05D006122 6.4e-73 280.0 285 58.6
PSO675G2898 Papaver somniferum HOM05D004873 ORTHO05D006122 8.4e-73 279.6 376 47.6
Solyc05g005620.4 Solanum lycopersicum HOM05D004873 ORTHO05D006122 4.0e-67 260.8 285 58.2
Os08g0416400 Oryza sativa ssp. japonica HOM05D004873 ORTHO05D006122 1.1e-61 242.7 384 45.3
SMO117G0118 Selaginella moellendorffii HOM05D004873 ORTHO05D006122 7.4e-61 240.0 818 40.1
CDE02G2726 Ceratophyllum demersum HOM05D004873 ORTHO05D006122 4.2e-56 224.2 230 56.5
CDE01G0278 Ceratophyllum demersum HOM05D004873 ORTHO05D006122 1.0e-54 219.5 466 38.6
CDE01G0488 Ceratophyllum demersum HOM05D004873 ORTHO05D006122 3.3e-53 214.5 234 61.1
SHI27198 Sapria himalayana HOM05D004873 ORTHO05D006122 1.4e-43 182.6 130 70.0
CBR_g45271 Chara braunii HOM05D000019 ORTHO05D000002 1.5e-42 179.1 292 45.2
CDE02G2297 Ceratophyllum demersum HOM05D001801 ORTHO05D001739 5.3e-35 154.1 159 52.8
FAN22G0459 Fragaria x ananassa HOM05D004873 ORTHO05D006122 1.0e-30 139.8 79 93.7
Aqoxy1G03520 Aquilegia oxysepala HOM05D004873 ORTHO05D006122 3.8e-25 121.3 71 84.5
MCO16G428 Micromonas commoda HOM05D004873 ORTHO05D006122 1.8e-22 112.5 136 46.3
Medtr5g034435 Medicago truncatula HOM05D004873 ORTHO05D006122 4.4e-21 107.8 71 76.1
Cre08.g375084 Chlamydomonas reinhardtii HOM05D004873 ORTHO05D006122 1.4e-19 102.8 198 40.4
Lsat_1_v5_gn_6_33360 Lactuca sativa HOM05D004873 ORTHO05D026408 1.6e-18 99.4 208 33.7
Lsat_1_v5_gn_5_2020 Lactuca sativa HOM05D004873 ORTHO05D026408 8.5e-17 93.6 223 31.4
PRCOL_00005912 Prasinoderma coloniale HOM05D004873 ORTHO05D006122 2.5e-16 92.0 130 37.7
MD16G1091800 Malus domestica HOM05D057391 ORTHO05D036519 9.4e-16 90.1 169 50.9
MD13G1091400 Malus domestica HOM05D057391 ORTHO05D036519 2.3e-14 85.5 181 47.5
SMO119G0006 Selaginella moellendorffii HOM05D004873 ORTHO05D006122 4.0e-14 84.7 92 53.3
Actinidia27784 Actinidia chinensis HOM05D004873 ORTHO05D026408 1.2e-13 83.2 165 37.6
PSO339G1217 Papaver somniferum HOM05D004873 ORTHO05D006122 9.1e-11 73.6 97 39.2
PSO017G6017 Papaver somniferum HOM05D004873 ORTHO05D006122 1.3e-09 69.7 134 32.8
ECA247G0578 Erigeron canadensis HOM05D004873 ORTHO05D006122 2.9e-09 68.6 113 47.8
Sp6g02640 Schrenkiella parvula HOM05D004873 ORTHO05D006122 6.1e-07 60.8 127 41.7
PSO339G2267 Papaver somniferum HOM05D004266 ORTHO05D005151 1.8e-06 59.3 99 31.3
PSO339G5784 Papaver somniferum HOM05D004266 ORTHO05D005151 1.8e-06 59.3 99 31.3
Sed0023525 Sechium edule HOM05D004266 ORTHO05D005151 3.0e-06 58.5 77 36.4
SMO351G0499 Selaginella moellendorffii HOM05D004873 ORTHO05D006122 3.0e-06 58.5 92 45.7
CDE07G0240 Ceratophyllum demersum HOM05D004266 ORTHO05D005151 4.0e-06 58.2 77 35.1
Lalb_Chr06g0161861 Lupinus albus HOM05D004266 ORTHO05D005151 4.0e-06 58.2 71 38.0
Lalb_Chr05g0228141 Lupinus albus HOM05D004873 ORTHO05D238147 5.2e-06 57.8 119 43.7
PGSC0003DMG400010340 Solanum tuberosum HOM05D004266 ORTHO05D005151 5.2e-06 57.8 77 32.5
Zm00001eb201080 Zea mays HOM05D004266 ORTHO05D005151 5.2e-06 57.8 90 31.1
CBR_g33965 Chara braunii HOM05D004266 ORTHO05D005151 6.8e-06 57.4 81 33.3
AagrBONN_evm.TU.Sc2ySwM_228.143 Anthoceros agrestis HOM05D004266 ORTHO05D005151 8.8e-06 57.0 79 35.4
Os11g0176100 Oryza sativa ssp. japonica HOM05D004266 ORTHO05D005151 8.8e-06 57.0 81 33.3


User provided reference genes

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