Gene: Os11g0176100
General Information
Structural Information
- Species Oryza sativa ssp. japonica
- Gene Identifier Os11g0176100
- Transcript Identifier Os11t0176100-01
- Gene Type Coding gene
- Location chr11 : 3796165-3800619 : positive
Gene Family Information
- ID HOM05D004266
- #Genes/#Species 166/96
- Phylogenetic origin
- ID ORTHO05D005151
- #Genes/#Species 163/95
- Phylogenetic origin
Gene Duplication Information
Labels
Identifiers
- tid Os11t0176100-01
- MSU-ID LOC_Os11g07490.1
- uniprot Q53PI0
Descriptions
- Description Nucleotide-binding, alpha-beta plait domain containing protein.
- Loading (ortholog descriptions from ath)...
Functional Annotation
Biological Process
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0045892 | IEA | GOA Database | negative regulation of transcription, DNA-templated | |
| GO:0031124 | IEA | GOA Database | mRNA 3'-end processing | |
| GO:0031124 | IEA | InterPro | mRNA 3'-end processing | |
| GO:0031123 | IEA | GOA Database | RNA 3'-end processing | |
| GO:0031047 | IEA | GOA Database | gene silencing by RNA | |
| GO:0060968 | IEA | GOA Database | regulation of gene silencing | |
| GO:0048589 | IEA | GOA Database | developmental growth | |
| GO:0042868 | IEA | GOA Database | antisense RNA metabolic process | |
| GO:0098789 | IBA | GOA Database | pre-mRNA cleavage required for polyadenylation |
Molecular Function
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0005515 | ISO | PLAZA Integrative Orthology | protein binding | AT1G71800 |
| GO:0003676 | IEA | GOA Database | nucleic acid binding | |
| GO:0003676 | IEA | InterPro | nucleic acid binding | |
| GO:0003729 | IBA IEA | GOA Database | mRNA binding | |
| GO:0003723 | IEA | GOA Database | RNA binding |
Cellular Component
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0005847 | IBA | GOA Database | mRNA cleavage and polyadenylation specificity factor complex | |
| GO:0005634 | IEA | GOA Database | nucleus |
Color Legend
| Experimental Evidence |
| Computational Reviewed Evidence |
| Electronic Evidence |
| InterPro | Description |
|---|---|
| IPR035979 | RNA-binding domain superfamily |
| IPR026896 | Transcription termination and cleavage factor, C-terminal domain |
| IPR000504 | RNA recognition motif domain |
| IPR025742 | Cleavage stimulation factor subunit 2, hinge domain |
| IPR038192 | Transcription termination and cleavage factor, C-terminal domain superfamily |
| IPR012677 | Nucleotide-binding alpha-beta plait domain superfamily |
| Mapman id | Description |
|---|---|
| 16.3.1.3.2 | RNA processing.RNA 3'-end processing.mRNA polyadenylation.Cleavage Stimulatory Factor (CstF) complex.component CstF64/Rna15 |