Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN12G3755 Fragaria x ananassa HOM05D005206 ORTHO05D006219 2.2e-260 901.7 443 100.0
FvH4_4g35030 Fragaria vesca HOM05D005206 ORTHO05D006219 3.5e-250 867.8 503 87.5
FAN22G1639 Fragaria x ananassa HOM05D005206 ORTHO05D006219 1.0e-241 839.7 431 96.3
RcHm_v2.0_Chr4g0444551 Rosa chinensis HOM05D005206 ORTHO05D006219 1.2e-231 806.2 503 81.1
RcHm_v2.0_Chr4g0444541 Rosa chinensis HOM05D005206 ORTHO05D006219 1.0e-193 680.2 503 70.4
FAN12G3075 Fragaria x ananassa HOM05D005206 ORTHO05D006219 6.7e-185 651.0 454 72.5
FvH4_4g35010 Fragaria vesca HOM05D005206 ORTHO05D006219 2.9e-180 635.6 498 66.3
Atru.chr11.1960 Acer truncatum HOM05D005206 ORTHO05D006219 8.2e-175 617.5 542 61.3
Potri.010G094800 Populus trichocarpa HOM05D005206 ORTHO05D006219 7.7e-173 610.9 533 61.2
Manes.01G196700 Manihot esculenta HOM05D005206 ORTHO05D006219 6.1e-170 601.3 536 59.3
Gorai.002G164200 Gossypium raimondii HOM05D005206 ORTHO05D006219 1.0e-169 600.5 539 59.6
Ciclev10031184m.g Citrus clementina HOM05D005206 ORTHO05D006219 3.9e-169 598.6 541 60.4
Gohir.A01G141200 Gossypium hirsutum HOM05D005206 ORTHO05D006219 6.7e-169 597.8 539 58.6
TAR371G0117 Trochodendron aralioides HOM05D005206 ORTHO05D006219 6.7e-169 597.8 551 59.2
QL03p062489 Quercus lobata HOM05D005206 ORTHO05D006219 1.5e-168 596.7 546 58.6
GSVIVG01020174001 Vitis vinifera HOM05D005206 ORTHO05D006219 2.0e-168 596.3 550 58.5
Haze_12137 Corylus avellana HOM05D005206 ORTHO05D006219 7.4e-168 594.3 571 57.8
Dinv30996 Davidia involucrata HOM05D005206 ORTHO05D006219 7.4e-168 594.3 550 60.4
Hma1.2p1_1049F.1_g251730 Hydrangea macrophylla HOM05D005206 ORTHO05D006219 7.4e-168 594.3 532 60.7
Lj2g0017178 Lotus japonicus HOM05D005206 ORTHO05D006219 1.3e-167 593.6 540 60.2
THA.LOC104816736 Tarenaya hassleriana HOM05D005206 ORTHO05D006219 1.7e-167 593.2 545 58.3
Sabra10G0067100 Salix brachista HOM05D005206 ORTHO05D006219 8.2e-167 590.9 562 57.5
vmacro16280 Vaccinium macrocarpon HOM05D005206 ORTHO05D006219 9.1e-166 587.4 536 59.9
BcaC07g38608 Brassica carinata HOM05D005206 ORTHO05D006219 1.2e-165 587.0 527 59.6
Aa31LG1G4440 Aethionema arabicum HOM05D005206 ORTHO05D006219 2.6e-165 585.9 539 59.4
Nitab4.5_0005722g0070 Nicotiana tabacum HOM05D005206 ORTHO05D006219 2.6e-165 585.9 535 59.1
Thecc.02G242400 Theobroma cacao HOM05D005206 ORTHO05D006219 3.5e-165 585.5 541 59.3
Sp1g09150 Schrenkiella parvula HOM05D005206 ORTHO05D006219 4.5e-165 585.1 539 59.0
CSS0048376 Camellia sinensis var. sinensis HOM05D005206 ORTHO05D006219 1.7e-164 583.2 549 59.6
Eucgr.B02561 Eucalyptus grandis HOM05D005206 ORTHO05D006219 3.8e-164 582.0 536 57.5
Nitab4.5_0000257g0230 Nicotiana tabacum HOM05D005206 ORTHO05D006219 5.0e-164 581.6 540 59.3
CARHR010660 Cardamine hirsuta HOM05D005206 ORTHO05D006219 1.4e-163 580.1 525 59.4
Thhalv10009477m.g Eutrema salsugineum HOM05D005206 ORTHO05D006219 1.9e-163 579.7 535 58.3
arahy.Tifrunner.gnm1.ann1.05N2IU Arachis hypogaea HOM05D005206 ORTHO05D006219 2.5e-163 579.3 526 58.4
CsaV3_5G031880 Cucumis sativus L. HOM05D005206 ORTHO05D006219 7.2e-163 577.8 527 58.4
Carub.0001s0995 Capsella rubella HOM05D005206 ORTHO05D006219 1.2e-162 577.0 538 58.4
Sed0001006 Sechium edule HOM05D005206 ORTHO05D006219 1.2e-162 577.0 529 58.0
CANSAT56G0905 Cannabis sativa HOM05D005206 ORTHO05D006219 2.1e-162 576.2 514 60.7
Rhsim12G0124400 Rhododendron simsii HOM05D005206 ORTHO05D006219 2.1e-162 576.2 545 58.2
Lsat_1_v5_gn_9_83200 Lactuca sativa HOM05D005206 ORTHO05D006219 2.7e-162 575.9 516 60.3
Phvul.004G071000 Phaseolus vulgaris HOM05D005206 ORTHO05D006219 3.0e-161 572.4 530 57.0
BraA08t35305Z Brassica rapa HOM05D005206 ORTHO05D006219 6.7e-161 571.2 529 58.8
Aqoxy3G03082 Aquilegia oxysepala HOM05D005206 ORTHO05D006219 1.1e-160 570.5 548 56.8
Lj3A1048T22 Lonicera japonica HOM05D005206 ORTHO05D006219 1.5e-160 570.1 536 58.2
Sc11g0001370 Simmondsia chinensis HOM05D005206 ORTHO05D006219 5.7e-160 568.2 551 55.2
CAN.G1160.5 Capsicum annuum HOM05D005206 ORTHO05D006219 9.7e-160 567.4 539 56.6
TWI36G1721 Tripterygium wilfordii HOM05D005206 ORTHO05D006219 2.8e-159 565.8 539 57.1
Nn4g22885 Nelumbo nucifera HOM05D005206 ORTHO05D006219 4.8e-159 565.1 527 58.4
arahy.Tifrunner.gnm1.ann1.U6W7RM Arachis hypogaea HOM05D005206 ORTHO05D006219 6.3e-159 564.7 557 54.6
Glyma.02G065600 Glycine max HOM05D005206 ORTHO05D006219 1.4e-158 563.5 541 56.7
MSTRG.7873 Avicennia marina HOM05D005206 ORTHO05D006219 1.8e-158 563.1 523 56.4
BcaC07g38570 Brassica carinata HOM05D005206 ORTHO05D006219 3.1e-158 562.4 527 57.7
C08p13780 Brassica napus HOM05D005206 ORTHO05D006219 3.1e-158 562.4 527 57.7
A08p33920 Brassica napus HOM05D005206 ORTHO05D006219 4.1e-158 562.0 553 56.2
PSO832G4147 Papaver somniferum HOM05D005206 ORTHO05D006219 9.1e-158 560.8 535 57.2
PSO063G3522 Papaver somniferum HOM05D005206 ORTHO05D006219 1.2e-157 560.5 534 57.3
BolC8t49011H Brassica oleracea HOM05D005206 ORTHO05D006219 2.6e-157 559.3 527 57.7
Cfa009102 Carpinus fangiana HOM05D005206 ORTHO05D006219 3.5e-157 558.9 521 59.7
Migut.L01447 Erythranthe guttata HOM05D005206 ORTHO05D006219 7.7e-157 557.8 538 55.0
C08p13760 Brassica napus HOM05D005206 ORTHO05D006219 1.3e-156 557.0 532 57.1
Ah.03g132350 Amaranthus hybridus HOM05D005206 ORTHO05D006219 2.9e-156 555.8 547 55.9
Gohir.D01G132600 Gossypium hirsutum HOM05D005206 ORTHO05D006219 3.8e-156 555.4 519 57.8
Lalb_Chr09g0326511 Lupinus albus HOM05D005206 ORTHO05D006219 3.8e-156 555.4 521 57.0
PGR119G2380 Punica granatum HOM05D005206 ORTHO05D006219 1.9e-155 553.1 526 57.8
SalBow2G2775 Salvia bowleyana HOM05D005206 ORTHO05D006219 5.5e-155 551.6 546 54.4
Dinv31107 Davidia involucrata HOM05D005206 ORTHO05D006219 1.4e-153 547.0 512 59.2
Hund05954 Selenicereus undatus HOM05D005206 ORTHO05D006219 1.8e-153 546.6 551 55.2
Medtr5g040170 Medicago truncatula HOM05D005206 ORTHO05D006219 2.3e-153 546.2 528 55.5
Medtr7g039450 Medicago truncatula HOM05D005206 ORTHO05D006219 2.3e-153 546.2 530 55.3
Actinidia15006 Actinidia chinensis HOM05D005206 ORTHO05D006219 5.2e-153 545.0 567 54.7
HanXRQChr16g0527551 Helianthus annuus HOM05D005206 ORTHO05D006219 4.4e-152 542.0 500 57.8
Hund25315 Selenicereus undatus HOM05D005206 ORTHO05D006219 9.7e-152 540.8 558 53.4
DCAR_007103 Daucus carota HOM05D005206 ORTHO05D006219 2.2e-151 539.7 552 53.6
MBI15_g34233_MAGBIO Magnolia biondii HOM05D005206 ORTHO05D006219 2.8e-151 539.3 596 51.3
EL10Ac8g20565 Beta vulgaris HOM05D005206 ORTHO05D006219 4.8e-151 538.5 544 54.6
ClCG05G025020 Citrullus lanatus HOM05D005206 ORTHO05D006219 7.0e-150 534.6 506 57.7
SGA_v2.0_scaffold166G38340 Striga asiatica HOM05D005206 ORTHO05D006219 7.7e-149 531.2 636 48.0
Duzib248G0782 Durio zibethinus HOM05D005206 ORTHO05D006219 1.3e-148 530.4 503 57.9
ATR1149G100 Amborella trichopoda HOM05D005206 ORTHO05D006219 8.5e-148 527.7 544 52.4
AUR62039408 Chenopodium quinoa HOM05D005206 ORTHO05D006219 1.9e-147 526.6 568 52.5
Sopen05g002140 Solanum pennellii HOM05D005206 ORTHO05D006219 2.5e-147 526.2 530 54.2
Prupe.1G259900 Prunus persica HOM05D005206 ORTHO05D006219 3.2e-147 525.8 332 79.8
Solyc05g006120.3 Solanum lycopersicum HOM05D005206 ORTHO05D006219 9.4e-147 524.2 530 54.5
ECA236G3606 Erigeron canadensis HOM05D005206 ORTHO05D006219 5.7e-144 515.0 524 53.2
Peaxi162Scf00421g00833 Petunia axillaris HOM05D005206 ORTHO05D006219 5.7e-144 515.0 542 53.5
MELO3C034123.2 Cucumis melo HOM05D005206 ORTHO05D006219 1.2e-141 507.3 541 54.2
Os06g0237200 Oryza sativa ssp. japonica HOM05D005206 ORTHO05D006219 1.4e-137 493.8 535 50.1
AT1G10520 Arabidopsis thaliana HOM05D005206 ORTHO05D006219 2.8e-135 486.1 471 57.1
Ca_18093_v3 Cicer arietinum L. HOM05D005206 ORTHO05D006219 1.2e-133 480.7 498 54.0
Zm00001eb371940 Zea mays HOM05D005206 ORTHO05D006219 7.8e-133 478.0 554 48.9
AL1G21320 Arabidopsis lyrata HOM05D005206 ORTHO05D006219 1.7e-132 476.9 444 57.4
FAN17G0295 Fragaria x ananassa HOM05D005206 ORTHO05D006219 6.6e-132 474.9 259 93.1
TPR.G13491 Trifolium pratense HOM05D005206 ORTHO05D006219 4.3e-131 472.2 476 53.8
SEGI_33189 Sequoiadendron giganteum HOM05D005206 ORTHO05D006219 9.5e-131 471.1 560 47.7
CiPaw.06G074900 Carya illinoinensis HOM05D005206 ORTHO05D006219 2.1e-130 469.9 361 67.0
COL.COLO4_38096 Corchorus olitorius HOM05D005206 ORTHO05D006219 6.1e-130 468.4 505 52.9
TWI36G0196 Tripterygium wilfordii HOM05D005206 ORTHO05D006219 2.9e-127 459.5 481 53.6
SalBow2G3534 Salvia bowleyana HOM05D005206 ORTHO05D006219 8.0e-122 441.4 555 46.1
Psat2g114280 Pisum sativum HOM05D005206 ORTHO05D006219 1.3e-116 424.1 464 50.6
unitig_748.g7742 Utricularia gibba HOM05D005206 ORTHO05D006219 1.1e-115 421.0 399 55.6
AagrBONN_evm.TU.Sc2ySwM_344.2272 Anthoceros agrestis HOM05D005206 ORTHO05D006219 2.0e-112 410.2 524 45.2
Oeu025446.1 Olea europaea HOM05D005206 ORTHO05D006219 4.6e-109 399.1 366 58.7
Pp3c15_19010 Physcomitrium patens HOM05D005206 ORTHO05D006219 3.2e-102 376.3 553 39.6
Mapoly0057s0101 Marchantia polymorpha HOM05D005206 ORTHO05D006219 6.2e-98 362.1 457 46.0
Cc11_g14230 Coffea canephora HOM05D005206 ORTHO05D006219 2.0e-96 357.1 373 54.4
MD16G1086700 Malus domestica HOM05D005206 ORTHO05D006219 3.4e-96 356.3 271 67.9
FAN07G1959 Fragaria x ananassa HOM05D005206 ORTHO05D006219 6.4e-95 352.1 214 79.9
AL1G24280 Arabidopsis lyrata HOM05D005206 ORTHO05D006219 5.4e-94 349.0 275 63.6
MD16G1086600 Malus domestica HOM05D005206 ORTHO05D006219 3.6e-90 336.3 237 73.8
SHI08107 Sapria himalayana HOM05D005206 ORTHO05D006219 1.4e-89 334.3 370 51.1
SMO353G0008 Selaginella moellendorffii HOM05D005206 ORTHO05D006219 1.1e-86 324.7 341 49.9
QL03p062590 Quercus lobata HOM05D005206 ORTHO05D006219 1.4e-86 324.3 527 41.6
HPP92_017067 Vanilla planifolia HOM05D005206 ORTHO05D006219 3.5e-85 319.7 380 49.7
CBR_g3482 Chara braunii HOM05D005206 ORTHO05D006219 1.8e-73 280.8 363 44.1
CDE07G1306 Ceratophyllum demersum HOM05D005206 ORTHO05D006219 2.4e-73 280.4 482 39.0
Cpa.g.sc5.344 Carica papaya HOM05D005206 ORTHO05D006219 1.9e-62 244.2 272 51.1
Mapoly0078s0005 Marchantia polymorpha HOM05D005206 ORTHO05D006219 2.5e-59 233.8 506 31.0
AUR62026580 Chenopodium quinoa HOM05D005206 ORTHO05D006219 1.1e-57 228.4 217 53.9
AUR62026578 Chenopodium quinoa HOM05D005206 ORTHO05D006219 1.5e-56 224.6 284 48.2
Cpa.g.sc5.348 Carica papaya HOM05D005206 ORTHO05D006219 2.6e-56 223.8 111 91.9
VMungo0464G1917 Vigna mungo HOM05D005206 ORTHO05D006219 3.2e-54 216.9 258 48.1
CBR_g48616 Chara braunii HOM05D005206 ORTHO05D006219 4.2e-54 216.5 493 32.0
Cc11_g14240 Coffea canephora HOM05D005206 ORTHO05D006219 6.7e-52 209.1 111 88.3
PGSC0003DMG400015600 Solanum tuberosum HOM05D005206 ORTHO05D006219 2.4e-49 200.7 111 84.7
AagrBONN_evm.TU.Sc2ySwM_362.251 Anthoceros agrestis HOM05D005206 ORTHO05D006219 5.3e-49 199.5 489 29.9
HPP92_017072 Vanilla planifolia HOM05D005206 ORTHO05D006219 5.5e-46 189.5 113 77.9
SMO235G0045 Selaginella moellendorffii HOM05D005206 ORTHO05D006219 1.4e-44 184.9 310 36.1
SMO347G0124 Selaginella moellendorffii HOM05D005206 ORTHO05D006219 2.0e-43 181.0 307 34.9
VMungo0464G2026 Vigna mungo HOM05D005206 ORTHO05D006219 1.5e-38 164.9 93 82.8
HPP92_017071 Vanilla planifolia HOM05D005206 ORTHO05D006219 7.2e-38 162.5 131 66.4
FvH4_6g23350 Fragaria vesca HOM05D005206 ORTHO05D006219 2.1e-37 161.0 81 97.5
FvH4_5g07370 Fragaria vesca HOM05D003058 ORTHO05D003464 7.7e-32 142.5 99 76.8
Cfa026399 Carpinus fangiana HOM05D005206 ORTHO05D006219 1.7e-26 124.8 486 23.7
Cpa.g.sc5.345 Carica papaya HOM05D005206 ORTHO05D006219 2.8e-26 124.0 80 68.8
RcHm_v2.0_Chr3g0484611 Rosa chinensis HOM05D005206 ORTHO05D006219 3.5e-24 117.1 62 91.9
SHI08109 Sapria himalayana HOM05D005206 ORTHO05D006219 4.3e-22 110.2 51 92.2
MCO16G526 Micromonas commoda HOM05D005206 ORTHO05D006219 3.6e-21 107.1 559 22.7
PRCOL_00003765 Prasinoderma coloniale HOM05D005206 ORTHO05D006219 7.5e-19 99.4 369 22.2
Ca_04200_v3 Cicer arietinum L. HOM05D005206 ORTHO05D006219 3.3e-14 84.0 55 69.1
Cre17.g716101 Chlamydomonas reinhardtii HOM05D005206 ORTHO05D006219 1.2e-11 75.5 145 30.3
RcHm_v2.0_Chr4g0401081 Rosa chinensis HOM05D005206 ORTHO05D006219 1.0e-07 62.4 38 76.3
HPP92_017068 Vanilla planifolia HOM05D005206 ORTHO05D006219 1.0e-07 62.4 62 48.4


User provided reference genes

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