Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN12G3075 Fragaria x ananassa HOM05D005206 ORTHO05D006219 9.9e-261 902.9 448 100.0
FAN22G1639 Fragaria x ananassa HOM05D005206 ORTHO05D006219 2.1e-242 842.0 447 94.4
FvH4_4g35010 Fragaria vesca HOM05D005206 ORTHO05D006219 4.8e-239 830.9 508 84.8
RcHm_v2.0_Chr4g0444541 Rosa chinensis HOM05D005206 ORTHO05D006219 5.5e-219 764.2 512 77.9
FAN12G3755 Fragaria x ananassa HOM05D005206 ORTHO05D006219 2.6e-184 649.0 454 72.5
RcHm_v2.0_Chr4g0444551 Rosa chinensis HOM05D005206 ORTHO05D006219 1.8e-177 626.3 519 63.8
FvH4_4g35030 Fragaria vesca HOM05D005206 ORTHO05D006219 5.2e-177 624.8 514 64.4
Lj3A1048T22 Lonicera japonica HOM05D005206 ORTHO05D006219 1.9e-158 563.1 549 57.2
Atru.chr11.1960 Acer truncatum HOM05D005206 ORTHO05D006219 4.6e-157 558.5 555 55.5
Dinv30996 Davidia involucrata HOM05D005206 ORTHO05D006219 1.7e-156 556.6 559 55.5
CsaV3_5G031880 Cucumis sativus L. HOM05D005206 ORTHO05D006219 3.9e-156 555.4 538 56.9
Sed0001006 Sechium edule HOM05D005206 ORTHO05D006219 8.6e-156 554.3 540 56.9
Ciclev10031184m.g Citrus clementina HOM05D005206 ORTHO05D006219 1.1e-155 553.9 555 55.5
QL03p062489 Quercus lobata HOM05D005206 ORTHO05D006219 1.1e-155 553.9 559 55.3
Potri.010G094800 Populus trichocarpa HOM05D005206 ORTHO05D006219 2.1e-154 549.7 545 55.8
BcaC07g38608 Brassica carinata HOM05D005206 ORTHO05D006219 2.8e-154 549.3 540 56.5
Manes.01G196700 Manihot esculenta HOM05D005206 ORTHO05D006219 6.2e-154 548.1 551 55.9
Lj2g0017178 Lotus japonicus HOM05D005206 ORTHO05D006219 1.1e-153 547.4 554 54.2
THA.LOC104816736 Tarenaya hassleriana HOM05D005206 ORTHO05D006219 1.8e-153 546.6 559 54.4
GSVIVG01020174001 Vitis vinifera HOM05D005206 ORTHO05D006219 2.3e-153 546.2 560 54.8
Haze_12137 Corylus avellana HOM05D005206 ORTHO05D006219 4.0e-153 545.4 585 53.8
Lsat_1_v5_gn_9_83200 Lactuca sativa HOM05D005206 ORTHO05D006219 1.5e-152 543.5 526 56.8
Phvul.004G071000 Phaseolus vulgaris HOM05D005206 ORTHO05D006219 1.5e-152 543.5 541 54.9
arahy.Tifrunner.gnm1.ann1.05N2IU Arachis hypogaea HOM05D005206 ORTHO05D006219 2.0e-152 543.1 542 54.6
Carub.0001s0995 Capsella rubella HOM05D005206 ORTHO05D006219 2.0e-152 543.1 540 55.2
TAR371G0117 Trochodendron aralioides HOM05D005206 ORTHO05D006219 2.6e-152 542.7 555 55.3
Eucgr.B02561 Eucalyptus grandis HOM05D005206 ORTHO05D006219 4.4e-152 542.0 552 54.3
CARHR010660 Cardamine hirsuta HOM05D005206 ORTHO05D006219 5.8e-152 541.6 539 55.7
Nitab4.5_0000257g0230 Nicotiana tabacum HOM05D005206 ORTHO05D006219 9.9e-152 540.8 553 55.0
CAN.G1160.5 Capsicum annuum HOM05D005206 ORTHO05D006219 1.3e-151 540.4 550 54.7
Aa31LG1G4440 Aethionema arabicum HOM05D005206 ORTHO05D006219 2.9e-151 539.3 553 54.6
Hma1.2p1_1049F.1_g251730 Hydrangea macrophylla HOM05D005206 ORTHO05D006219 3.7e-151 538.9 540 55.9
Thhalv10009477m.g Eutrema salsugineum HOM05D005206 ORTHO05D006219 8.3e-151 537.7 546 54.4
Nitab4.5_0005722g0070 Nicotiana tabacum HOM05D005206 ORTHO05D006219 1.4e-150 537.0 541 55.6
Gorai.002G164200 Gossypium raimondii HOM05D005206 ORTHO05D006219 3.2e-150 535.8 553 52.8
Sp1g09150 Schrenkiella parvula HOM05D005206 ORTHO05D006219 4.1e-150 535.4 547 54.1
CSS0048376 Camellia sinensis var. sinensis HOM05D005206 ORTHO05D006219 7.1e-150 534.6 560 53.9
PSO063G3522 Papaver somniferum HOM05D005206 ORTHO05D006219 9.2e-150 534.3 521 55.9
Thecc.02G242400 Theobroma cacao HOM05D005206 ORTHO05D006219 9.2e-150 534.3 554 54.2
CANSAT56G0905 Cannabis sativa HOM05D005206 ORTHO05D006219 1.2e-149 533.9 518 57.3
Glyma.02G065600 Glycine max HOM05D005206 ORTHO05D006219 2.7e-149 532.7 552 53.4
PSO832G4147 Papaver somniferum HOM05D005206 ORTHO05D006219 7.8e-149 531.2 526 55.5
Rhsim12G0124400 Rhododendron simsii HOM05D005206 ORTHO05D006219 7.8e-149 531.2 558 53.9
BcaC07g38570 Brassica carinata HOM05D005206 ORTHO05D006219 1.0e-148 530.8 541 54.5
C08p13780 Brassica napus HOM05D005206 ORTHO05D006219 1.0e-148 530.8 541 54.5
HanXRQChr16g0527551 Helianthus annuus HOM05D005206 ORTHO05D006219 1.0e-148 530.8 525 56.4
Gohir.A01G141200 Gossypium hirsutum HOM05D005206 ORTHO05D006219 1.3e-148 530.4 553 52.4
arahy.Tifrunner.gnm1.ann1.U6W7RM Arachis hypogaea HOM05D005206 ORTHO05D006219 1.7e-148 530.0 573 51.7
BraA08t35305Z Brassica rapa HOM05D005206 ORTHO05D006219 3.9e-148 528.9 547 53.9
Sabra10G0067100 Salix brachista HOM05D005206 ORTHO05D006219 3.9e-148 528.9 574 52.8
vmacro16280 Vaccinium macrocarpon HOM05D005206 ORTHO05D006219 5.1e-148 528.5 550 54.2
Aqoxy3G03082 Aquilegia oxysepala HOM05D005206 ORTHO05D006219 1.1e-147 527.3 542 54.6
PGR119G2380 Punica granatum HOM05D005206 ORTHO05D006219 1.1e-147 527.3 529 56.3
BolC8t49011H Brassica oleracea HOM05D005206 ORTHO05D006219 5.6e-147 525.0 542 54.8
Lalb_Chr09g0326511 Lupinus albus HOM05D005206 ORTHO05D006219 7.3e-147 524.6 538 53.7
Sc11g0001370 Simmondsia chinensis HOM05D005206 ORTHO05D006219 9.5e-147 524.2 570 52.5
C08p13760 Brassica napus HOM05D005206 ORTHO05D006219 1.2e-146 523.9 547 54.3
MSTRG.7873 Avicennia marina HOM05D005206 ORTHO05D006219 4.7e-146 521.9 536 53.9
TWI36G1721 Tripterygium wilfordii HOM05D005206 ORTHO05D006219 8.1e-146 521.2 549 53.4
Sopen05g002140 Solanum pennellii HOM05D005206 ORTHO05D006219 1.1e-145 520.8 548 52.9
Solyc05g006120.3 Solanum lycopersicum HOM05D005206 ORTHO05D006219 1.4e-145 520.4 549 53.6
A08p33920 Brassica napus HOM05D005206 ORTHO05D006219 2.4e-145 519.6 571 51.7
Cfa009102 Carpinus fangiana HOM05D005206 ORTHO05D006219 2.4e-145 519.6 535 55.9
DCAR_007103 Daucus carota HOM05D005206 ORTHO05D006219 5.8e-144 515.0 558 51.3
Medtr7g039450 Medicago truncatula HOM05D005206 ORTHO05D006219 7.6e-144 514.6 548 52.4
Medtr5g040170 Medicago truncatula HOM05D005206 ORTHO05D006219 9.9e-144 514.2 548 52.6
Ah.03g132350 Amaranthus hybridus HOM05D005206 ORTHO05D006219 6.4e-143 511.5 562 51.6
Dinv31107 Davidia involucrata HOM05D005206 ORTHO05D006219 6.4e-143 511.5 527 54.5
Nn4g22885 Nelumbo nucifera HOM05D005206 ORTHO05D006219 8.4e-143 511.1 542 53.7
Migut.L01447 Erythranthe guttata HOM05D005206 ORTHO05D006219 1.4e-142 510.4 551 51.9
ClCG05G025020 Citrullus lanatus HOM05D005206 ORTHO05D006219 1.9e-142 510.0 516 55.4
SalBow2G2775 Salvia bowleyana HOM05D005206 ORTHO05D006219 7.1e-142 508.1 556 52.2
MELO3C034123.2 Cucumis melo HOM05D005206 ORTHO05D006219 6.0e-141 505.0 535 55.3
Hund25315 Selenicereus undatus HOM05D005206 ORTHO05D006219 1.5e-139 500.4 580 49.1
SGA_v2.0_scaffold166G38340 Striga asiatica HOM05D005206 ORTHO05D006219 1.9e-139 500.0 650 46.6
ECA236G3606 Erigeron canadensis HOM05D005206 ORTHO05D006219 7.3e-139 498.0 547 52.7
Gohir.D01G132600 Gossypium hirsutum HOM05D005206 ORTHO05D006219 3.6e-138 495.7 533 51.6
Actinidia15006 Actinidia chinensis HOM05D005206 ORTHO05D006219 6.2e-138 495.0 577 50.3
AUR62039408 Chenopodium quinoa HOM05D005206 ORTHO05D006219 8.1e-138 494.6 582 48.6
Hund05954 Selenicereus undatus HOM05D005206 ORTHO05D006219 5.3e-137 491.9 547 51.4
EL10Ac8g20565 Beta vulgaris HOM05D005206 ORTHO05D006219 1.5e-136 490.3 556 51.1
ATR1149G100 Amborella trichopoda HOM05D005206 ORTHO05D006219 5.8e-136 488.4 560 49.3
MBI15_g34233_MAGBIO Magnolia biondii HOM05D005206 ORTHO05D006219 1.7e-135 486.9 610 47.7
Peaxi162Scf00421g00833 Petunia axillaris HOM05D005206 ORTHO05D006219 3.8e-135 485.7 553 50.3
Duzib248G0782 Durio zibethinus HOM05D005206 ORTHO05D006219 5.4e-134 481.9 511 52.3
Prupe.1G259900 Prunus persica HOM05D005206 ORTHO05D006219 7.6e-128 461.5 346 69.7
Os06g0237200 Oryza sativa ssp. japonica HOM05D005206 ORTHO05D006219 8.4e-127 458.0 551 45.9
Zm00001eb371940 Zea mays HOM05D005206 ORTHO05D006219 6.0e-125 451.8 555 46.8
AT1G10520 Arabidopsis thaliana HOM05D005206 ORTHO05D006219 1.8e-124 450.3 479 53.0
Ca_18093_v3 Cicer arietinum L. HOM05D005206 ORTHO05D006219 3.9e-124 449.1 514 50.4
TPR.G13491 Trifolium pratense HOM05D005206 ORTHO05D006219 1.9e-123 446.8 501 50.1
AL1G21320 Arabidopsis lyrata HOM05D005206 ORTHO05D006219 1.5e-120 437.2 458 53.5
CiPaw.06G074900 Carya illinoinensis HOM05D005206 ORTHO05D006219 9.9e-120 434.5 378 61.6
SEGI_33189 Sequoiadendron giganteum HOM05D005206 ORTHO05D006219 2.9e-119 433.0 576 43.4
TWI36G0196 Tripterygium wilfordii HOM05D005206 ORTHO05D006219 1.1e-115 421.0 488 50.6
FAN07G1959 Fragaria x ananassa HOM05D005206 ORTHO05D006219 2.0e-112 410.2 230 89.1
COL.COLO4_38096 Corchorus olitorius HOM05D005206 ORTHO05D006219 7.6e-112 408.3 517 48.0
SalBow2G3534 Salvia bowleyana HOM05D005206 ORTHO05D006219 1.0e-111 407.9 542 46.1
Psat2g114280 Pisum sativum HOM05D005206 ORTHO05D006219 2.3e-108 396.7 478 47.5
AagrBONN_evm.TU.Sc2ySwM_344.2272 Anthoceros agrestis HOM05D005206 ORTHO05D006219 1.3e-106 391.0 529 44.2
unitig_748.g7742 Utricularia gibba HOM05D005206 ORTHO05D006219 4.8e-106 389.0 414 52.2
Oeu025446.1 Olea europaea HOM05D005206 ORTHO05D006219 1.1e-97 361.3 374 53.2
FAN17G0295 Fragaria x ananassa HOM05D005206 ORTHO05D006219 2.6e-96 356.7 259 70.7
Mapoly0057s0101 Marchantia polymorpha HOM05D005206 ORTHO05D006219 1.8e-92 344.0 481 43.2
Pp3c15_19010 Physcomitrium patens HOM05D005206 ORTHO05D006219 2.0e-91 340.5 563 36.1
Cc11_g14230 Coffea canephora HOM05D005206 ORTHO05D006219 1.3e-90 337.8 351 54.1
MD16G1086700 Malus domestica HOM05D005206 ORTHO05D006219 9.1e-89 331.6 287 61.0
AL1G24280 Arabidopsis lyrata HOM05D005206 ORTHO05D006219 6.1e-85 318.9 291 57.4
SHI08107 Sapria himalayana HOM05D005206 ORTHO05D006219 2.3e-84 317.0 383 48.6
SMO353G0008 Selaginella moellendorffii HOM05D005206 ORTHO05D006219 1.7e-82 310.8 343 49.3
HPP92_017067 Vanilla planifolia HOM05D005206 ORTHO05D006219 1.1e-78 298.1 395 46.1
QL03p062590 Quercus lobata HOM05D005206 ORTHO05D006219 1.2e-77 294.7 534 40.6
MD16G1086600 Malus domestica HOM05D005206 ORTHO05D006219 5.7e-75 285.8 231 65.8
CBR_g3482 Chara braunii HOM05D005206 ORTHO05D006219 6.5e-71 272.3 351 45.0
CDE07G1306 Ceratophyllum demersum HOM05D005206 ORTHO05D006219 1.1e-65 255.0 529 35.2
Cpa.g.sc5.344 Carica papaya HOM05D005206 ORTHO05D006219 3.4e-59 233.4 260 52.7
Mapoly0078s0005 Marchantia polymorpha HOM05D005206 ORTHO05D006219 2.7e-56 223.8 520 31.0
AUR62026580 Chenopodium quinoa HOM05D005206 ORTHO05D006219 1.7e-55 221.1 233 50.2
VMungo0464G1917 Vigna mungo HOM05D005206 ORTHO05D006219 6.1e-53 212.6 253 49.4
AUR62026578 Chenopodium quinoa HOM05D005206 ORTHO05D006219 6.4e-50 202.6 282 44.3
CBR_g48616 Chara braunii HOM05D005206 ORTHO05D006219 1.1e-49 201.8 495 31.1
AagrBONN_evm.TU.Sc2ySwM_362.251 Anthoceros agrestis HOM05D005206 ORTHO05D006219 1.4e-49 201.4 489 31.1
Cpa.g.sc5.348 Carica papaya HOM05D005206 ORTHO05D006219 3.2e-49 200.3 111 82.0
Cc11_g14240 Coffea canephora HOM05D005206 ORTHO05D006219 2.3e-47 194.1 111 82.0
PGSC0003DMG400015600 Solanum tuberosum HOM05D005206 ORTHO05D006219 1.6e-45 188.0 111 79.3
SMO347G0124 Selaginella moellendorffii HOM05D005206 ORTHO05D006219 2.3e-44 184.1 309 37.2
SMO235G0045 Selaginella moellendorffii HOM05D005206 ORTHO05D006219 2.0e-43 181.0 313 35.8
HPP92_017072 Vanilla planifolia HOM05D005206 ORTHO05D006219 4.6e-40 169.9 113 69.0
HPP92_017071 Vanilla planifolia HOM05D005206 ORTHO05D006219 2.3e-39 167.5 238 43.7
VMungo0464G2026 Vigna mungo HOM05D005206 ORTHO05D006219 4.9e-34 149.8 93 74.2
FvH4_6g23350 Fragaria vesca HOM05D005206 ORTHO05D006219 1.6e-29 134.8 81 79.0
Cfa026399 Carpinus fangiana HOM05D005206 ORTHO05D006219 6.4e-26 122.9 353 27.5
Cpa.g.sc5.345 Carica papaya HOM05D005206 ORTHO05D006219 1.6e-24 118.2 96 62.5
FvH4_5g07370 Fragaria vesca HOM05D003058 ORTHO05D003464 3.6e-21 107.1 115 54.8
MCO16G526 Micromonas commoda HOM05D005206 ORTHO05D006219 1.4e-20 105.1 385 25.5
RcHm_v2.0_Chr3g0484611 Rosa chinensis HOM05D005206 ORTHO05D006219 1.2e-19 102.1 62 77.4
SHI08109 Sapria himalayana HOM05D005206 ORTHO05D006219 1.7e-18 98.2 51 80.4
Cre17.g716101 Chlamydomonas reinhardtii HOM05D005206 ORTHO05D006219 1.5e-11 75.1 161 31.1
Ca_04200_v3 Cicer arietinum L. HOM05D005206 ORTHO05D006219 5.8e-11 73.2 54 61.1
PRCOL_00003765 Prasinoderma coloniale HOM05D005206 ORTHO05D006219 7.6e-11 72.8 204 26.0
HPP92_017068 Vanilla planifolia HOM05D005206 ORTHO05D006219 1.1e-06 58.9 31 74.2


User provided reference genes

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