Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN12G2321 Fragaria x ananassa HOM05D005045 ORTHO05D006386 0.0e+00 2520.7 1320 100.0
FvH4_4g13300 Fragaria vesca HOM05D005045 ORTHO05D006386 0.0e+00 2392.8 1318 96.3
FAN22G0494 Fragaria x ananassa HOM05D005045 ORTHO05D006386 0.0e+00 2218.4 1372 88.1
FAN07G1455 Fragaria x ananassa HOM05D005045 ORTHO05D006386 0.0e+00 2213.0 1293 92.0
RcHm_v2.0_Chr4g0413591 Rosa chinensis HOM05D005045 ORTHO05D006386 0.0e+00 2121.3 1318 85.8
CiPaw.01G116800 Carya illinoinensis HOM05D005045 ORTHO05D006386 0.0e+00 1852.0 1318 74.1
Cfa014961 Carpinus fangiana HOM05D005045 ORTHO05D006386 0.0e+00 1846.2 1318 74.1
TWI53G1845 Tripterygium wilfordii HOM05D005045 ORTHO05D006386 0.0e+00 1819.3 1318 72.6
Cpa.g.sc157.48 Carica papaya HOM05D005045 ORTHO05D006386 0.0e+00 1785.8 1318 71.4
Potri.001G320300 Populus trichocarpa HOM05D005045 ORTHO05D006386 0.0e+00 1780.8 1318 71.4
Prupe.1G165000 Prunus persica HOM05D005045 ORTHO05D006386 0.0e+00 1762.3 1318 72.1
Sed0026716 Sechium edule HOM05D005045 ORTHO05D006386 0.0e+00 1748.0 1318 69.7
MD05G1230300 Malus domestica HOM05D005045 ORTHO05D006386 0.0e+00 1742.6 1318 70.4
MELO3C006292.2 Cucumis melo HOM05D005045 ORTHO05D006386 0.0e+00 1729.9 1318 69.7
Ciclev10004166m.g Citrus clementina HOM05D005045 ORTHO05D006386 0.0e+00 1727.6 1318 69.7
Actinidia28996 Actinidia chinensis HOM05D005045 ORTHO05D006386 0.0e+00 1723.4 1325 70.4
Lalb_Chr11g0075871 Lupinus albus HOM05D005045 ORTHO05D006386 0.0e+00 1709.1 1318 69.1
Glyma.18G002400 Glycine max HOM05D005045 ORTHO05D006386 0.0e+00 1703.7 1318 69.4
Phvul.001G266800 Phaseolus vulgaris HOM05D005045 ORTHO05D006386 0.0e+00 1701.0 1318 68.9
Dinv38168 Davidia involucrata HOM05D005045 ORTHO05D006386 0.0e+00 1700.3 1318 70.0
Lj6g0005100 Lotus japonicus HOM05D005045 ORTHO05D006386 0.0e+00 1696.0 1318 69.0
CsaV3_3G010730 Cucumis sativus L. HOM05D005045 ORTHO05D006386 0.0e+00 1692.2 1318 68.2
THA.LOC104826172 Tarenaya hassleriana HOM05D005045 ORTHO05D006386 0.0e+00 1679.1 1318 67.8
Sabra16G0202900 Salix brachista HOM05D005045 ORTHO05D006386 0.0e+00 1677.1 1439 64.0
Thhalv10016151m.g Eutrema salsugineum HOM05D005045 ORTHO05D006386 0.0e+00 1672.5 1318 67.3
Manes.03G144200 Manihot esculenta HOM05D005045 ORTHO05D006386 0.0e+00 1671.8 1318 68.2
PGR142G0016 Punica granatum HOM05D005045 ORTHO05D006386 0.0e+00 1669.4 1318 68.5
ClCG05G003110 Citrullus lanatus HOM05D005045 ORTHO05D006386 0.0e+00 1667.1 1366 66.1
Haze_11653 Corylus avellana HOM05D005045 ORTHO05D006386 0.0e+00 1665.2 1530 61.4
Carub.0004s1329 Capsella rubella HOM05D005045 ORTHO05D006386 0.0e+00 1661.7 1318 67.0
Sp4g14350 Schrenkiella parvula HOM05D005045 ORTHO05D006386 0.0e+00 1632.5 1318 66.5
AL4G27320 Arabidopsis lyrata HOM05D005045 ORTHO05D006386 0.0e+00 1628.2 1318 66.5
AT2G31970 Arabidopsis thaliana HOM05D005045 ORTHO05D006386 0.0e+00 1622.1 1318 66.2
CSS0020032 Camellia sinensis var. sinensis HOM05D005045 ORTHO05D006386 0.0e+00 1611.7 1318 66.5
Migut.G00767 Erythranthe guttata HOM05D005045 ORTHO05D006386 0.0e+00 1607.0 1318 64.6
VMungo1383G3533 Vigna mungo HOM05D005045 ORTHO05D006386 0.0e+00 1595.1 1318 65.8
CAN.G765.38 Capsicum annuum HOM05D005045 ORTHO05D006386 0.0e+00 1594.7 1318 65.5
PSO017G0058 Papaver somniferum HOM05D005045 ORTHO05D006386 0.0e+00 1590.1 1318 64.9
BcaB01g04004 Brassica carinata HOM05D005045 ORTHO05D006386 0.0e+00 1585.5 1318 64.8
A03p17990 Brassica napus HOM05D005045 ORTHO05D006386 0.0e+00 1580.5 1341 64.4
Nitab4.5_0002260g0080 Nicotiana tabacum HOM05D005045 ORTHO05D006386 0.0e+00 1579.3 1330 64.3
Peaxi162Scf00423g00410 Petunia axillaris HOM05D005045 ORTHO05D006386 0.0e+00 1577.4 1318 64.6
Cc03_g08470 Coffea canephora HOM05D005045 ORTHO05D006386 0.0e+00 1576.6 1318 64.9
C03p21030 Brassica napus HOM05D005045 ORTHO05D006386 0.0e+00 1572.0 1333 64.4
BraA03t11060Z Brassica rapa HOM05D005045 ORTHO05D006386 0.0e+00 1572.0 1360 63.5
BolC3t14484H Brassica oleracea HOM05D005045 ORTHO05D006386 0.0e+00 1571.6 1333 64.4
Thecc.04G195000 Theobroma cacao HOM05D005045 ORTHO05D006386 0.0e+00 1565.4 1318 64.6
Sopen05g032270 Solanum pennellii HOM05D005045 ORTHO05D006386 0.0e+00 1565.1 1318 64.6
Nn3g20083 Nelumbo nucifera HOM05D005045 ORTHO05D006386 0.0e+00 1561.6 1326 63.7
Aqoxy2G03932 Aquilegia oxysepala HOM05D005045 ORTHO05D006386 0.0e+00 1561.2 1318 63.8
Aa31LG5G5040 Aethionema arabicum HOM05D005045 ORTHO05D006386 0.0e+00 1554.7 1344 63.2
Psat5g100040 Pisum sativum HOM05D005045 ORTHO05D006386 0.0e+00 1554.7 1318 63.8
Eucgr.H00025 Eucalyptus grandis HOM05D005045 ORTHO05D006386 0.0e+00 1549.6 1211 68.8
Solyc05g053800.3 Solanum lycopersicum HOM05D005045 ORTHO05D006386 0.0e+00 1538.5 1318 63.7
HPP92_024209 Vanilla planifolia HOM05D005045 ORTHO05D006386 0.0e+00 1534.6 1318 62.2
MSTRG.9796 Avicennia marina HOM05D005045 ORTHO05D006386 0.0e+00 1533.9 1318 62.1
Sc19g0007360 Simmondsia chinensis HOM05D005045 ORTHO05D006386 0.0e+00 1531.9 1211 68.2
Atru.chr4.1578 Acer truncatum HOM05D005045 ORTHO05D006386 0.0e+00 1525.8 1318 64.1
Duzib151G0179 Durio zibethinus HOM05D005045 ORTHO05D006386 0.0e+00 1521.9 1318 63.4
Medtr3g084300 Medicago truncatula HOM05D005045 ORTHO05D006386 0.0e+00 1506.5 1318 62.7
TPR.G25379 Trifolium pratense HOM05D005045 ORTHO05D006386 0.0e+00 1498.4 1338 61.5
Rhsim02G0061900 Rhododendron simsii HOM05D005045 ORTHO05D006386 0.0e+00 1496.5 1402 60.4
EL10Ac3g07454 Beta vulgaris HOM05D005045 ORTHO05D006386 0.0e+00 1471.4 1318 61.4
SalBow8G0828 Salvia bowleyana HOM05D005045 ORTHO05D006386 0.0e+00 1469.5 1318 60.4
ATR0561G148 Amborella trichopoda HOM05D005045 ORTHO05D006386 0.0e+00 1462.2 1318 60.6
Gohir.A02G019100 Gossypium hirsutum HOM05D005045 ORTHO05D006386 0.0e+00 1453.3 1319 61.5
Gohir.D02G022400 Gossypium hirsutum HOM05D005045 ORTHO05D006386 0.0e+00 1451.8 1319 61.5
Gorai.005G027800 Gossypium raimondii HOM05D005045 ORTHO05D006386 0.0e+00 1451.4 1319 61.5
DCAR_005488 Daucus carota HOM05D005045 ORTHO05D006386 0.0e+00 1437.2 1318 60.3
Lsat_1_v5_gn_6_59140 Lactuca sativa HOM05D005045 ORTHO05D006386 0.0e+00 1434.1 1318 59.9
SGA_v2.0_scaffold27G11679 Striga asiatica HOM05D005045 ORTHO05D006386 0.0e+00 1432.9 1318 59.3
HanXRQChr02g0058481 Helianthus annuus HOM05D005045 ORTHO05D006386 0.0e+00 1422.9 1318 59.4
CDE02G0777 Ceratophyllum demersum HOM05D005045 ORTHO05D006386 0.0e+00 1412.5 1318 59.6
ECA233G4939 Erigeron canadensis HOM05D005045 ORTHO05D006386 0.0e+00 1410.2 1318 58.8
vmacro15566 Vaccinium macrocarpon HOM05D005045 ORTHO05D006386 0.0e+00 1405.6 1371 58.7
Mapoly0027s0186 Marchantia polymorpha HOM05D005045 ORTHO05D006386 0.0e+00 1135.2 1318 48.9
Zm00001eb181120 Zea mays HOM05D005045 ORTHO05D006386 9.0e-312 1073.5 1099 53.6
Pp3c10_3760 Physcomitrium patens HOM05D005045 ORTHO05D006386 2.3e-297 1026.2 1318 44.9
Nitab4.5_0003358g0080 Nicotiana tabacum HOM05D005045 ORTHO05D006386 2.1e-290 1003.0 1064 54.2
AagrBONN_evm.TU.Sc2ySwM_368.995 Anthoceros agrestis HOM05D002013 ORTHO05D002293 3.3e-288 995.7 1333 44.3
CARHR125720 Cardamine hirsuta HOM05D005045 ORTHO05D006386 8.4e-268 927.9 745 66.4
Oeu034322.3 Olea europaea HOM05D005045 ORTHO05D006386 2.1e-266 923.3 903 57.8
AUR62020863 Chenopodium quinoa HOM05D005045 ORTHO05D006386 3.0e-265 919.5 903 56.1
SMO356G0717 Selaginella moellendorffii HOM05D005045 ORTHO05D006386 7.7e-261 904.8 1319 42.8
BcaNung07126 Brassica carinata HOM05D005045 ORTHO05D006386 7.2e-259 898.3 786 62.2
unitig_0.g1961 Utricularia gibba HOM05D005045 ORTHO05D006386 3.3e-256 889.4 1060 49.2
TAR362G1154 Trochodendron aralioides HOM05D005045 ORTHO05D006386 3.1e-254 882.9 669 70.4
MBI07_g27365_MAGBIO Magnolia biondii HOM05D005045 ORTHO05D006386 2.0e-253 880.2 760 63.0
arahy.Tifrunner.gnm1.ann1.RK3EBX Arachis hypogaea HOM05D005045 ORTHO05D006386 6.5e-252 875.2 631 71.9
arahy.Tifrunner.gnm1.ann1.2Y4S4L Arachis hypogaea HOM05D005045 ORTHO05D006386 8.5e-252 874.8 631 72.1
SEGI_03959 Sequoiadendron giganteum HOM05D005045 ORTHO05D006386 1.8e-246 857.1 776 58.1
Ah.04g149410 Amaranthus hybridus HOM05D005045 ORTHO05D006386 1.1e-243 847.8 1113 46.6
SMO217G0009 Selaginella moellendorffii HOM05D005045 ORTHO05D006386 4.1e-238 829.3 1255 41.8
Ca_16406_v3 Cicer arietinum L. HOM05D005045 ORTHO05D006386 2.3e-225 786.9 631 66.2
BcaC01g05925 Brassica carinata HOM05D005045 ORTHO05D006386 7.2e-219 765.4 786 57.0
Lju912A1G33 Lonicera japonica HOM05D005045 ORTHO05D006386 1.2e-213 748.0 730 57.3
MBI07_g27366_MAGBIO Magnolia biondii HOM05D005045 ORTHO05D006386 6.8e-209 732.3 558 69.0
CBR_g44539 Chara braunii HOM05D005045 ORTHO05D006386 2.2e-207 727.2 1302 36.5
Os02g0497500 Oryza sativa ssp. japonica HOM05D005045 ORTHO05D006386 4.6e-205 719.5 728 53.8
Ca_16407_v3 Cicer arietinum L. HOM05D005045 ORTHO05D006386 5.8e-200 702.6 594 64.1
Ca_16416_v3 Cicer arietinum L. HOM05D005045 ORTHO05D006386 5.8e-200 702.6 594 64.1
SHI26063 Sapria himalayana HOM05D005045 ORTHO05D006386 2.9e-199 700.3 735 55.0
Lj6C381G5 Lonicera japonica HOM05D005045 ORTHO05D006386 1.9e-187 661.0 604 60.9
MCO01G132 Micromonas commoda HOM05D005045 ORTHO05D006386 1.8e-153 548.1 1352 32.4
Aqoxy430s001 Aquilegia oxysepala HOM05D005045 ORTHO05D006386 9.4e-142 509.2 526 53.4
arahy.Tifrunner.gnm1.ann1.KK4CMR Arachis hypogaea HOM05D005045 ORTHO05D006386 3.3e-139 500.7 447 63.1
FAN17G1875 Fragaria x ananassa HOM05D005045 ORTHO05D006386 1.7e-135 488.4 258 98.4
AUR62020862 Chenopodium quinoa HOM05D005045 ORTHO05D006386 1.8e-132 478.4 435 60.0
Lju912C0T2 Lonicera japonica HOM05D005045 ORTHO05D006386 3.3e-131 474.2 468 57.3
CSS0025820 Camellia sinensis var. sinensis HOM05D005045 ORTHO05D006386 1.1e-129 469.2 312 79.8
PRCOL_00000463 Prasinoderma coloniale HOM05D005045 ORTHO05D006386 3.8e-127 460.7 1352 29.6
AUR62018556 Chenopodium quinoa HOM05D005045 ORTHO05D006386 9.7e-123 446.0 337 69.7
Cre03.g192550 Chlamydomonas reinhardtii HOM05D005045 ORTHO05D006386 3.7e-122 444.1 1375 28.9
Ca_16414_v3 Cicer arietinum L. HOM05D005045 ORTHO05D006386 7.2e-118 429.9 222 95.0
BcaB01g04007 Brassica carinata HOM05D005045 ORTHO05D006386 2.0e-112 411.8 404 56.9
unitig_0.g1960 Utricularia gibba HOM05D005045 ORTHO05D006386 8.0e-109 399.8 224 87.1
Cfa022909 Carpinus fangiana HOM05D005045 ORTHO05D006386 3.0e-108 397.9 1358 27.5
COL.COLO4_20233 Corchorus olitorius HOM05D005045 ORTHO05D006386 3.8e-103 380.9 220 87.7
Ca_16415_v3 Cicer arietinum L. HOM05D005045 ORTHO05D006386 1.7e-98 365.5 408 51.0
BcaNung07125 Brassica carinata HOM05D005045 ORTHO05D006386 1.4e-97 362.5 317 62.8
COL.COLO4_20231 Corchorus olitorius HOM05D005045 ORTHO05D006386 2.3e-92 345.1 868 32.6
QL06p025788 Quercus lobata HOM05D005045 ORTHO05D006386 2.9e-90 338.2 227 78.4
Ah.04g149400 Amaranthus hybridus HOM05D005045 ORTHO05D006386 4.1e-89 334.3 223 77.6
Lj6A381G13 Lonicera japonica HOM05D005045 ORTHO05D006386 9.2e-81 306.6 227 68.7
AL80U10080 Arabidopsis lyrata HOM05D005045 ORTHO05D006386 1.2e-72 279.6 149 93.3
Nitab4.5_0003358g0100 Nicotiana tabacum HOM05D005045 ORTHO05D006386 2.1e-61 242.3 126 92.1
Lj6A381G12 Lonicera japonica HOM05D005045 ORTHO05D006386 8.7e-47 193.7 192 56.2
Actinidia11455 Actinidia chinensis HOM05D005045 ORTHO05D006386 1.5e-46 193.0 137 76.6
Prupe.1G180400 Prunus persica HOM05D005045 ORTHO05D006386 3.1e-44 185.3 170 58.2
Nitab4.5_0003358g0090 Nicotiana tabacum HOM05D005045 ORTHO05D006386 1.3e-42 179.9 125 76.0
SHI26072 Sapria himalayana HOM05D005045 ORTHO05D006386 2.6e-35 155.6 167 55.1
Actinidia11457 Actinidia chinensis HOM05D005045 ORTHO05D006386 3.8e-34 151.8 106 75.5
Rhsim02G0061800 Rhododendron simsii HOM05D005045 ORTHO05D006386 1.8e-31 142.9 71 91.5
SHI26067 Sapria himalayana HOM05D005045 ORTHO05D006386 8.2e-29 134.0 114 61.4
BcaB01g04008 Brassica carinata HOM05D005045 ORTHO05D006386 1.8e-23 116.3 225 37.8
SHI26068 Sapria himalayana HOM05D005045 ORTHO05D000014 2.3e-23 115.9 141 46.8
Lsat_1_v5_gn_2_13081 Lactuca sativa HOM05D005045 ORTHO05D006386 1.1e-22 113.6 64 89.1
MBI07_g45033_MAGBIO Magnolia biondii HOM05D005045 ORTHO05D006386 2.0e-22 112.8 100 62.0
SHI26076 Sapria himalayana HOM05D005045 ORTHO05D006386 3.3e-22 112.1 63 90.5
Lsat_1_v5_gn_5_127521 Lactuca sativa HOM05D005045 ORTHO05D006386 1.4e-20 106.7 108 58.3
Lsat_1_v5_gn_3_72140 Lactuca sativa HOM05D005045 ORTHO05D006386 3.1e-20 105.5 64 78.1
QL10p041126 Quercus lobata HOM05D005045 ORTHO05D006386 1.1e-17 97.1 91 58.2
Lsat_1_v5_gn_6_56800 Lactuca sativa HOM05D000112 ORTHO05D001918 4.8e-13 81.6 53 73.6
VMungo0331G0368 Vigna mungo HOM05D005045 ORTHO05D006386 4.5e-11 75.1 140 40.7
VMungo0251G0925 Vigna mungo HOM05D005045 ORTHO05D005612 1.0e-10 73.9 90 51.1
Lsat_1_v5_gn_8_35100 Lactuca sativa HOM05D000324 ORTHO05D010724 2.9e-10 72.4 63 66.7
ECA233G3942 Erigeron canadensis HOM05D005045 ORTHO05D006386 4.2e-09 68.6 155 30.3
BcaC05g28670 Brassica carinata HOM05D005045 ORTHO05D006386 1.2e-08 67.0 76 55.3
Lsat_1_v5_gn_4_149801 Lactuca sativa HOM05D000324 ORTHO05D010724 1.6e-08 66.6 61 65.6
Lsat_1_v5_gn_9_35481 Lactuca sativa HOM05D000324 ORTHO05D010724 2.7e-08 65.9 56 69.6
Lsat_1_v5_gn_1_5060 Lactuca sativa HOM05D001876 ORTHO05D002002 2.6e-06 59.3 33 87.9


User provided reference genes

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