Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN11G3419 Fragaria x ananassa HOM05D004774 ORTHO05D005514 7.9e-85 317.0 152 100.0
FAN26G2874 Fragaria x ananassa HOM05D004774 ORTHO05D005514 4.2e-62 241.5 142 85.2
FvH4_1g22880 Fragaria vesca HOM05D004774 ORTHO05D005514 5.5e-62 241.1 140 86.4
FAN19G2773 Fragaria x ananassa HOM05D004774 ORTHO05D005514 7.9e-61 237.3 140 85.7
RcHm_v2.0_Chr5g0063451 Rosa chinensis HOM05D004774 ORTHO05D005514 3.3e-59 231.9 140 83.6
FAN23G2064 Fragaria x ananassa HOM05D004774 ORTHO05D005514 1.1e-57 226.9 164 75.0
FvH4_3g35340 Fragaria vesca HOM05D004774 ORTHO05D005514 2.8e-50 202.2 98 98.0
MD08G1227600 Malus domestica HOM05D004774 ORTHO05D005514 1.0e-39 167.2 141 63.1
Prupe.2G103200 Prunus persica HOM05D004774 ORTHO05D005514 1.9e-38 162.9 142 62.7
GSVIVG01011075001 Vitis vinifera HOM05D004774 ORTHO05D005514 4.0e-36 155.2 140 57.9
GSVIVG01000730001 Vitis vinifera HOM05D004774 ORTHO05D005514 5.2e-36 154.8 140 57.1
Lalb_Chr17g0348441 Lupinus albus HOM05D004774 ORTHO05D005514 4.8e-34 148.3 149 52.3
VMungo0331G0358 Vigna mungo HOM05D002747 ORTHO05D005514 8.2e-34 147.5 153 52.9
VMungo1309G2525 Vigna mungo HOM05D004774 ORTHO05D005514 8.2e-34 147.5 153 52.9
Ca_26554_v3 Cicer arietinum L. HOM05D004774 ORTHO05D005514 4.1e-33 145.2 144 56.2
Lj4g0014477 Lotus japonicus HOM05D004774 ORTHO05D005514 4.1e-33 145.2 139 55.4
Phvul.010G020150 Phaseolus vulgaris HOM05D004774 ORTHO05D005514 7.0e-33 144.4 153 51.0
Phvul.010G020200 Phaseolus vulgaris HOM05D004774 ORTHO05D005514 7.0e-33 144.4 153 51.0
EL10Ac3g05825 Beta vulgaris HOM05D004774 ORTHO05D005514 9.1e-33 144.1 139 53.2
QL08p045287 Quercus lobata HOM05D004774 ORTHO05D005514 1.2e-32 143.7 140 57.1
TWI12G1255 Tripterygium wilfordii HOM05D004774 ORTHO05D005514 1.2e-32 143.7 140 54.3
CANSAT35G0005 Cannabis sativa HOM05D004774 ORTHO05D005514 1.6e-32 143.3 140 55.7
TAR636G0805 Trochodendron aralioides HOM05D004774 ORTHO05D005514 1.6e-32 143.3 140 53.6
ECA247G2354 Erigeron canadensis HOM05D002220 ORTHO05D008182 2.7e-32 142.5 139 56.1
Cpa.g.sc52.135 Carica papaya HOM05D004774 ORTHO05D005514 1.3e-31 140.2 140 56.4
Dinv22475 Davidia involucrata HOM05D004774 ORTHO05D005514 1.3e-31 140.2 140 56.4
Glyma.03G218500 Glycine max HOM05D004774 ORTHO05D005514 1.3e-31 140.2 152 51.3
Nn4g23666 Nelumbo nucifera HOM05D004774 ORTHO05D005514 1.7e-31 139.8 140 53.6
Psat3g097920 Pisum sativum HOM05D004774 ORTHO05D005514 1.7e-31 139.8 140 55.0
AUR62015525 Chenopodium quinoa HOM05D004774 ORTHO05D005514 2.2e-31 139.4 147 52.4
Nitab4.5_0001427g0080 Nicotiana tabacum HOM05D004774 ORTHO05D005514 2.2e-31 139.4 148 51.4
Dinv40162 Davidia involucrata HOM05D004774 ORTHO05D005514 2.9e-31 139.0 140 55.0
DCAR_002682 Daucus carota HOM05D004774 ORTHO05D005514 3.8e-31 138.7 140 51.4
Duzib211G0067 Durio zibethinus HOM05D004774 ORTHO05D005514 6.5e-31 137.9 147 53.1
TWI18G0081 Tripterygium wilfordii HOM05D004774 ORTHO05D005514 6.5e-31 137.9 140 52.9
Cfa005024 Carpinus fangiana HOM05D004774 ORTHO05D005514 1.5e-30 136.7 140 54.3
Glyma.19G215300 Glycine max HOM05D004774 ORTHO05D005514 1.5e-30 136.7 152 50.7
Thecc.01G266900 Theobroma cacao HOM05D004774 ORTHO05D005514 1.9e-30 136.3 148 53.4
Atru.chr5.1584 Acer truncatum HOM05D004774 ORTHO05D005514 3.2e-30 135.6 140 55.7
CAN.G1190.29 Capsicum annuum HOM05D004774 ORTHO05D005514 3.2e-30 135.6 141 53.9
CiPaw.06G137100 Carya illinoinensis HOM05D004774 ORTHO05D005514 3.2e-30 135.6 140 53.6
Duzib211G0109 Durio zibethinus HOM05D004774 ORTHO05D005514 3.2e-30 135.6 147 52.4
Cc01_g18810 Coffea canephora HOM05D004774 ORTHO05D005514 4.2e-30 135.2 138 52.9
Nitab4.5_0003289g0060 Nicotiana tabacum HOM05D004774 ORTHO05D005514 4.2e-30 135.2 142 54.2
AUR62002186 Chenopodium quinoa HOM05D004774 ORTHO05D005514 7.2e-30 134.4 140 52.1
Ciclev10023915m.g Citrus clementina HOM05D004774 ORTHO05D005514 7.2e-30 134.4 140 52.1
Sopen07g002340 Solanum pennellii HOM05D004774 ORTHO05D005514 1.2e-29 133.7 141 52.5
PGSC0003DMG400011166 Solanum tuberosum HOM05D004774 ORTHO05D005514 2.1e-29 132.9 152 50.7
Rhsim13G0031100 Rhododendron simsii HOM05D004774 ORTHO05D005514 4.7e-29 131.7 137 51.8
Gohir.A07G209300 Gossypium hirsutum HOM05D004774 ORTHO05D005514 6.1e-29 131.3 148 51.4
Gohir.D07G215400 Gossypium hirsutum HOM05D004774 ORTHO05D005514 6.1e-29 131.3 148 52.0
Gorai.001G243200 Gossypium raimondii HOM05D004774 ORTHO05D005514 6.1e-29 131.3 148 51.4
Solyc07g006240.4 Solanum lycopersicum HOM05D004774 ORTHO05D005514 6.1e-29 131.3 147 50.3
THA.LOC104815831 Tarenaya hassleriana HOM05D004774 ORTHO05D005514 1.0e-28 130.6 146 47.3
COL.COLO4_05101 Corchorus olitorius HOM05D004774 ORTHO05D005514 1.8e-28 129.8 149 50.3
Medtr8g072680 Medicago truncatula HOM05D004774 ORTHO05D005514 2.3e-28 129.4 139 53.2
Aqoxy7G03988 Aquilegia oxysepala HOM05D004774 ORTHO05D005514 4.0e-28 128.6 140 50.7
Lsat_1_v5_gn_5_176641 Lactuca sativa HOM05D004774 ORTHO05D005514 5.2e-28 128.3 140 54.3
Aqoxy1G01668 Aquilegia oxysepala HOM05D004774 ORTHO05D005514 6.8e-28 127.9 140 50.7
Duzib138G0586 Durio zibethinus HOM05D004774 ORTHO05D005514 6.8e-28 127.9 148 50.7
Eucgr.B01492 Eucalyptus grandis HOM05D004774 ORTHO05D005514 6.8e-28 127.9 158 48.1
SMO012G0037 Selaginella moellendorffii HOM05D004774 ORTHO05D005514 1.2e-27 127.1 137 45.3
PSO170G5180 Papaver somniferum HOM05D004774 ORTHO05D005514 1.5e-27 126.7 140 50.7
Aqoxy4G03157 Aquilegia oxysepala HOM05D004774 ORTHO05D005514 2.6e-27 125.9 140 50.0
CSS0049587 Camellia sinensis var. sinensis HOM05D004774 ORTHO05D005514 2.6e-27 125.9 128 53.1
PSO017G6900 Papaver somniferum HOM05D004774 ORTHO05D005514 3.4e-27 125.6 140 51.4
MBI04_g06856_MAGBIO Magnolia biondii HOM05D004774 ORTHO05D005514 7.5e-27 124.4 138 47.1
Manes.01G201400 Manihot esculenta HOM05D004774 ORTHO05D005514 6.3e-26 121.3 151 47.7
MSTRG.18290 Avicennia marina HOM05D004774 ORTHO05D005514 8.3e-26 120.9 150 48.0
CsaV3_7G030220 Cucumis sativus L. HOM05D004774 ORTHO05D005514 8.3e-26 120.9 141 47.5
Aa31LG1G7840 Aethionema arabicum HOM05D004480 ORTHO05D005546 1.1e-25 120.6 142 45.1
Carub.0001s0611 Capsella rubella HOM05D004774 ORTHO05D005514 1.1e-25 120.6 140 45.7
MELO3C023634.2 Cucumis melo HOM05D004774 ORTHO05D005514 1.1e-25 120.6 145 46.9
SEGI_34955 Sequoiadendron giganteum HOM05D004774 ORTHO05D005514 1.1e-25 120.6 137 43.8
AT1G06790 Arabidopsis thaliana HOM05D004774 ORTHO05D005514 1.4e-25 120.2 153 42.5
ClCG09G004860 Citrullus lanatus HOM05D004774 ORTHO05D005514 1.4e-25 120.2 141 47.5
Thhalv10028967m.g Eutrema salsugineum HOM05D004774 ORTHO05D005514 1.4e-25 120.2 148 43.9
HPP92_027004 Vanilla planifolia HOM05D004774 ORTHO05D005514 2.4e-25 119.4 138 46.4
Migut.D00377 Erythranthe guttata HOM05D004774 ORTHO05D005514 4.1e-25 118.6 147 51.7
Sed0022653 Sechium edule HOM05D004774 ORTHO05D005514 4.1e-25 118.6 158 44.9
HPP92_015388 Vanilla planifolia HOM05D004774 ORTHO05D005514 4.1e-25 118.6 138 45.7
BraA08t35495Z Brassica rapa HOM05D004774 ORTHO05D005514 7.0e-25 117.9 141 44.7
A08p35880 Brassica napus HOM05D004774 ORTHO05D005514 9.1e-25 117.5 140 44.3
C08p02690 Brassica napus HOM05D004774 ORTHO05D005514 9.1e-25 117.5 140 44.3
BolC8t47065H Brassica oleracea HOM05D004774 ORTHO05D005514 9.1e-25 117.5 140 44.3
AL1G16800 Arabidopsis lyrata HOM05D004774 ORTHO05D005514 1.2e-24 117.1 142 44.4
CARHR006490 Cardamine hirsuta HOM05D004774 ORTHO05D005514 1.2e-24 117.1 136 44.9
FAN21G2916 Fragaria x ananassa HOM05D004774 ORTHO05D005514 1.2e-24 117.1 58 98.3
Hma1.2p1_1029F.1_g249620 Hydrangea macrophylla HOM05D004774 ORTHO05D005514 1.2e-24 117.1 174 43.7
Hma1.2p1_1029F.1_g249641 Hydrangea macrophylla HOM05D004774 ORTHO05D005514 1.2e-24 117.1 174 43.7
vmacro02628 Vaccinium macrocarpon HOM05D004774 ORTHO05D005514 1.6e-24 116.7 131 49.6
Sp1g05530 Schrenkiella parvula HOM05D004774 ORTHO05D005514 2.0e-24 116.3 144 43.1
BolC8t52628H Brassica oleracea HOM05D004774 ORTHO05D005514 3.5e-24 115.5 139 41.7
Mapoly0050s0102 Marchantia polymorpha HOM05D004774 ORTHO05D005514 3.5e-24 115.5 137 40.1
AagrBONN_evm.TU.Sc2ySwM_344.4376 Anthoceros agrestis HOM05D004774 ORTHO05D005514 1.0e-23 114.0 137 36.5
C08p51000 Brassica napus HOM05D004774 ORTHO05D005514 1.7e-23 113.2 137 41.6
Potri.002G044500 Populus trichocarpa HOM05D004774 ORTHO05D005514 6.5e-23 111.3 140 50.0
A09p66780 Brassica napus HOM05D004774 ORTHO05D005514 1.9e-22 109.8 140 39.3
BraA09t42016Z Brassica rapa HOM05D004774 ORTHO05D005514 1.9e-22 109.8 140 39.3
Os07g0477000 Oryza sativa ssp. japonica HOM05D004774 ORTHO05D005514 1.9e-22 109.8 139 45.3
SGA_v2.0_scaffold138G35272 Striga asiatica HOM05D004774 ORTHO05D005514 2.5e-22 109.4 150 43.3
Pp3c7_17850 Physcomitrium patens HOM05D004774 ORTHO05D005514 1.2e-21 107.1 138 39.9
Sabra02G0035700 Salix brachista HOM05D004774 ORTHO05D005514 1.2e-21 107.1 140 48.6
unitig_0.g1128 Utricularia gibba HOM05D004774 ORTHO05D005514 1.2e-21 107.1 129 45.0
Ca_27275_v3 Cicer arietinum L. HOM05D004774 ORTHO05D005514 1.6e-21 106.7 117 53.0
BcaC07g42048 Brassica carinata HOM05D004774 ORTHO05D005514 2.8e-21 105.9 130 40.8
Sc04g0000740 Simmondsia chinensis HOM05D004774 ORTHO05D005514 2.8e-21 105.9 140 43.6
SGA_v2.0_scaffold43G16236 Striga asiatica HOM05D004774 ORTHO05D005514 2.8e-21 105.9 133 45.1
Peaxi162Scf00934g00135 Petunia axillaris HOM05D004774 ORTHO05D005514 4.7e-21 105.1 109 54.1
FAN16G3049 Fragaria x ananassa HOM05D004774 ORTHO05D005514 1.0e-20 104.0 52 92.3
Nn1g02575 Nelumbo nucifera HOM05D004774 ORTHO05D005514 3.7e-18 95.5 104 48.1
PSO339G5528 Papaver somniferum HOM05D004774 ORTHO05D005514 1.8e-17 93.2 122 46.7
Lj4A469T41 Lonicera japonica HOM05D004774 ORTHO05D005514 2.4e-17 92.8 86 58.1
SMO298G0040 Selaginella moellendorffii HOM05D004774 ORTHO05D005514 5.4e-17 91.7 134 38.1
Prupe.7G016800 Prunus persica HOM05D004774 ORTHO05D005514 1.2e-16 90.5 104 51.0
Cre12.g538400 Chlamydomonas reinhardtii HOM05D004774 ORTHO05D005514 5.9e-16 88.2 149 36.9
SHI09938 Sapria himalayana HOM05D004774 ORTHO05D000023 5.0e-15 85.1 97 48.5
CDE07G0321 Ceratophyllum demersum HOM05D004774 ORTHO05D005514 1.1e-14 84.0 122 36.9
PGR119G0353 Punica granatum HOM05D004774 ORTHO05D005514 1.9e-14 83.2 113 42.5
SEGI_28935 Sequoiadendron giganteum HOM05D004774 ORTHO05D005514 1.9e-14 83.2 99 42.4
arahy.Tifrunner.gnm1.ann1.KW6T12 Arachis hypogaea HOM05D004774 ORTHO05D005514 2.5e-14 82.8 58 70.7
HanXRQChr14g0454071 Helianthus annuus HOM05D004774 ORTHO05D005514 7.3e-14 81.3 116 44.0
BcaC07g42538 Brassica carinata HOM05D004774 ORTHO05D005514 2.8e-13 79.3 85 44.7
arahy.Tifrunner.gnm1.ann1.SKV00U Arachis hypogaea HOM05D004774 ORTHO05D005514 3.6e-13 79.0 84 45.2
CDE07G1842 Ceratophyllum demersum HOM05D004774 ORTHO05D005514 5.2e-12 75.1 134 34.3
TPR.G27929 Trifolium pratense HOM05D004774 ORTHO05D005514 1.2e-11 73.9 68 58.8
TPR.G26057 Trifolium pratense HOM05D004774 ORTHO05D005514 3.4e-11 72.4 64 60.9
MCO09G483 Micromonas commoda HOM05D004774 ORTHO05D005514 4.4e-11 72.0 122 32.8
Aqoxy7G03987 Aquilegia oxysepala HOM05D004774 ORTHO05D005514 9.8e-11 70.9 58 60.3
FAN28G1675 Fragaria x ananassa HOM05D004774 ORTHO05D005514 1.4e-09 67.0 32 96.9
ATR0665G644 Amborella trichopoda HOM05D004774 ORTHO05D005514 1.2e-08 63.9 52 59.6
Zm00001eb319960 Zea mays HOM05D004774 ORTHO05D005514 2.0e-08 63.2 75 46.7
GSVIVG01000731001 Vitis vinifera HOM05D004774 ORTHO05D005514 3.0e-07 59.3 44 63.6
TPR.G27925 Trifolium pratense HOM05D004774 ORTHO05D005514 2.5e-06 56.2 63 44.4
GSVIVG01021945001 Vitis vinifera HOM05D004774 ORTHO05D005514 4.3e-06 55.5 58 53.4
Ah.11g042480 Amaranthus hybridus HOM05D004774 ORTHO05D005514 7.3e-06 54.7 52 57.7


User provided reference genes

Program Settings