Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN11G2504 Fragaria x ananassa HOM05D003266 ORTHO05D003718 7.7e-70 266.9 126 100.0
RcHm_v2.0_Chr2g0139581 Rosa chinensis HOM05D003266 ORTHO05D003718 3.0e-21 105.5 61 86.9
FvH4_6g31990 Fragaria vesca HOM05D003266 ORTHO05D003718 3.6e-19 98.6 59 84.7
FAN14G1864 Fragaria x ananassa HOM05D003266 ORTHO05D003718 3.6e-19 98.6 59 84.7
FAN05G1225 Fragaria x ananassa HOM05D003266 ORTHO05D003718 4.8e-19 98.2 59 84.7
Prupe.3G063700 Prunus persica HOM05D003266 ORTHO05D003718 4.8e-19 98.2 61 78.7
TAR626G0182 Trochodendron aralioides HOM05D003266 ORTHO05D003718 1.1e-18 97.1 61 77.0
TAR636G2661 Trochodendron aralioides HOM05D003266 ORTHO05D003718 1.1e-18 97.1 61 77.0
QL05p021182 Quercus lobata HOM05D003266 ORTHO05D003718 1.4e-18 96.7 61 73.8
GSVIVG01017040001 Vitis vinifera HOM05D003266 ORTHO05D003718 1.4e-18 96.7 61 77.0
Duzib160G0509 Durio zibethinus HOM05D003266 ORTHO05D003718 1.8e-18 96.3 61 75.4
Manes.11G036300 Manihot esculenta HOM05D003266 ORTHO05D003718 3.1e-18 95.5 61 72.1
FAN09G1259 Fragaria x ananassa HOM05D003266 ORTHO05D003718 4.0e-18 95.1 59 81.4
Gohir.D10G068200 Gossypium hirsutum HOM05D003266 ORTHO05D003718 4.0e-18 95.1 61 73.8
Gorai.011G072800 Gossypium raimondii HOM05D003266 ORTHO05D003718 4.0e-18 95.1 61 73.8
MD03G1197500 Malus domestica HOM05D003266 ORTHO05D003718 4.0e-18 95.1 61 75.4
TAR383G0500 Trochodendron aralioides HOM05D003266 ORTHO05D003718 4.0e-18 95.1 61 75.4
COL.COLO4_30471 Corchorus olitorius HOM05D003266 ORTHO05D003718 5.3e-18 94.7 61 73.8
Thecc.06G095700 Theobroma cacao HOM05D003266 ORTHO05D003718 5.3e-18 94.7 61 72.1
Atru.chr1.3468 Acer truncatum HOM05D003266 ORTHO05D003718 6.9e-18 94.4 61 72.1
Cfa002112 Carpinus fangiana HOM05D003266 ORTHO05D003718 6.9e-18 94.4 67 73.1
Nn2g12597 Nelumbo nucifera HOM05D003266 ORTHO05D003718 6.9e-18 94.4 61 73.8
Prupe.3G063800 Prunus persica HOM05D003266 ORTHO05D003718 1.2e-17 93.6 61 75.4
Actinidia21698 Actinidia chinensis HOM05D003266 ORTHO05D003718 1.5e-17 93.2 61 70.5
CANSAT80G0796 Cannabis sativa HOM05D003266 ORTHO05D003718 1.5e-17 93.2 63 71.4
Gohir.A10G067100 Gossypium hirsutum HOM05D003266 ORTHO05D003718 1.5e-17 93.2 61 72.1
TWI12G1119 Tripterygium wilfordii HOM05D003266 ORTHO05D003718 2.0e-17 92.8 61 72.1
Dinv38001 Davidia involucrata HOM05D003266 ORTHO05D003718 2.6e-17 92.4 61 73.8
SalBow2G0145 Salvia bowleyana HOM05D003266 ORTHO05D003718 2.6e-17 92.4 61 70.5
Potri.001G186900 Populus trichocarpa HOM05D003266 ORTHO05D003718 3.4e-17 92.0 61 70.5
Haze_16335 Corylus avellana HOM05D003266 ORTHO05D003718 4.4e-17 91.7 67 70.1
MSTRG.22654 Avicennia marina HOM05D003266 ORTHO05D003718 7.6e-17 90.9 65 69.2
Cpa.g.sc34.31 Carica papaya HOM05D003266 ORTHO05D003718 9.9e-17 90.5 61 67.2
Sabra01G0153400 Salix brachista HOM05D003266 ORTHO05D003718 9.9e-17 90.5 61 68.9
Aqoxy7G01499 Aquilegia oxysepala HOM05D003266 ORTHO05D003718 1.3e-16 90.1 61 67.2
CSS0002644 Camellia sinensis var. sinensis HOM05D003266 ORTHO05D003718 1.3e-16 90.1 61 68.9
MBI04_g27074_MAGBIO Magnolia biondii HOM05D003266 ORTHO05D003718 1.3e-16 90.1 61 70.5
Ciclev10024815m.g Citrus clementina HOM05D003266 ORTHO05D003718 2.2e-16 89.4 61 68.9
Oeu062570.2 Olea europaea HOM05D003266 ORTHO05D003718 2.9e-16 89.0 62 72.6
Actinidia32711 Actinidia chinensis HOM05D003266 ORTHO05D003718 3.8e-16 88.6 61 63.9
CiPaw.01G233800 Carya illinoinensis HOM05D003266 ORTHO05D003718 3.8e-16 88.6 61 68.9
Ca_01149_v3 Cicer arietinum L. HOM05D003266 ORTHO05D003718 3.8e-16 88.6 61 67.2
CsaV3_7G033540 Cucumis sativus L. HOM05D003266 ORTHO05D003718 3.8e-16 88.6 69 63.8
Lj3g0015133 Lotus japonicus HOM05D003266 ORTHO05D003718 4.9e-16 88.2 61 70.5
Sed0017993 Sechium edule HOM05D003266 ORTHO05D003718 4.9e-16 88.2 69 63.8
CANSAT56G3441 Cannabis sativa HOM05D003266 ORTHO05D003718 6.4e-16 87.8 63 68.3
CANSAT80G0873 Cannabis sativa HOM05D003266 ORTHO05D003718 6.4e-16 87.8 63 68.3
Phvul.005G170100 Phaseolus vulgaris HOM05D003266 ORTHO05D003718 6.4e-16 87.8 61 67.2
Rhsim08G0225600 Rhododendron simsii HOM05D003266 ORTHO05D003718 6.4e-16 87.8 61 65.6
BcaC08g43373 Brassica carinata HOM05D003266 ORTHO05D003718 8.4e-16 87.4 61 68.9
C06p07410 Brassica napus HOM05D003266 ORTHO05D003718 8.4e-16 87.4 61 68.9
BolC6t35830H Brassica oleracea HOM05D003266 ORTHO05D003718 8.4e-16 87.4 61 68.9
Eucgr.J02950 Eucalyptus grandis HOM05D003266 ORTHO05D003718 8.4e-16 87.4 61 67.2
Glyma.13G356200 Glycine max HOM05D003266 ORTHO05D003718 8.4e-16 87.4 61 67.2
Glyma.15G017900 Glycine max HOM05D003266 ORTHO05D003718 8.4e-16 87.4 61 68.9
VMungo1080G0852 Vigna mungo HOM05D003266 ORTHO05D003718 8.4e-16 87.4 61 67.2
Lj9C510G10 Lonicera japonica HOM05D003266 ORTHO05D003718 1.1e-15 87.0 61 67.2
Sed0020980 Sechium edule HOM05D003266 ORTHO05D003718 1.1e-15 87.0 61 70.5
Carub.0001s4111 Capsella rubella HOM05D003266 ORTHO05D003718 1.4e-15 86.7 61 65.6
Thhalv10011231m.g Eutrema salsugineum HOM05D003266 ORTHO05D003718 1.4e-15 86.7 61 67.2
Sp1g38720 Schrenkiella parvula HOM05D003266 ORTHO05D003718 1.4e-15 86.7 61 68.9
Aa31LG8G3410 Aethionema arabicum HOM05D003266 ORTHO05D003718 1.9e-15 86.3 69 60.9
BraA06t23416Z Brassica rapa HOM05D003266 ORTHO05D003718 1.9e-15 86.3 61 67.2
CAN.G438.41 Capsicum annuum HOM05D003266 ORTHO05D003718 1.9e-15 86.3 61 68.9
Gohir.D01G054332 Gossypium hirsutum HOM05D003266 ORTHO05D003718 1.9e-15 86.3 62 62.9
Lj5C56T10 Lonicera japonica HOM05D003266 ORTHO05D003718 1.9e-15 86.3 61 67.2
TPR.G37248 Trifolium pratense HOM05D003266 ORTHO05D003718 1.9e-15 86.3 61 65.6
MELO3C024265.2 Cucumis melo HOM05D003266 ORTHO05D003718 2.4e-15 85.9 69 62.3
Migut.I00926 Erythranthe guttata HOM05D003266 ORTHO05D003718 2.4e-15 85.9 61 65.6
Peaxi162Scf00015g00241 Petunia axillaris HOM05D003266 ORTHO05D003718 2.4e-15 85.9 61 67.2
PGR102G0722 Punica granatum HOM05D003266 ORTHO05D003718 2.4e-15 85.9 61 70.5
Nitab4.5_0002424g0070 Nicotiana tabacum HOM05D003266 ORTHO05D003718 3.2e-15 85.5 61 67.2
PSO210G4271 Papaver somniferum HOM05D003266 ORTHO05D003718 4.2e-15 85.1 60 68.3
PSO210G6470 Papaver somniferum HOM05D003266 ORTHO05D003718 4.2e-15 85.1 60 68.3
A06p02000 Brassica napus HOM05D003266 ORTHO05D003718 5.4e-15 84.7 61 65.6
CARHR042320 Cardamine hirsuta HOM05D003266 ORTHO05D003718 5.4e-15 84.7 59 67.8
AUR62022165 Chenopodium quinoa HOM05D003266 ORTHO05D003718 5.4e-15 84.7 61 65.6
AUR62031873 Chenopodium quinoa HOM05D003266 ORTHO05D003718 5.4e-15 84.7 61 65.6
DCAR_026337 Daucus carota HOM05D003266 ORTHO05D003718 5.4e-15 84.7 61 63.9
Sc12g0009560 Simmondsia chinensis HOM05D003266 ORTHO05D003718 5.4e-15 84.7 67 56.7
Sc12g0009670 Simmondsia chinensis HOM05D003266 ORTHO05D003718 5.4e-15 84.7 67 56.7
Zm00001eb339290 Zea mays HOM05D003266 ORTHO05D003718 5.4e-15 84.7 63 63.5
CARHR091470 Cardamine hirsuta HOM05D003266 ORTHO05D003718 7.1e-15 84.3 61 68.9
Nitab4.5_0006202g0010 Nicotiana tabacum HOM05D003266 ORTHO05D003718 7.1e-15 84.3 61 65.6
Nitab4.5_0013558g0010 Nicotiana tabacum HOM05D003266 ORTHO05D003718 7.1e-15 84.3 61 65.6
Psat5g297200 Pisum sativum HOM05D003266 ORTHO05D003718 7.1e-15 84.3 61 62.3
Solyc03g120470.4 Solanum lycopersicum HOM05D003266 ORTHO05D003718 7.1e-15 84.3 61 67.2
Sopen00g008370 Solanum pennellii HOM05D003266 ORTHO05D003718 7.1e-15 84.3 61 67.2
PGSC0003DMG401002553 Solanum tuberosum HOM05D003266 ORTHO05D003718 7.1e-15 84.3 61 67.2
Gorai.002G074200 Gossypium raimondii HOM05D003266 ORTHO05D003718 9.3e-15 84.0 62 62.9
Hma1.2p1_1689F.1_g297680 Hydrangea macrophylla HOM05D003266 ORTHO05D003718 1.2e-14 83.6 61 65.6
Hma1.2p1_1689F.1_g297710 Hydrangea macrophylla HOM05D003266 ORTHO05D003718 1.2e-14 83.6 61 65.6
CSS0038057 Camellia sinensis var. sinensis HOM05D003266 ORTHO05D003718 1.6e-14 83.2 61 60.7
CSS0038683 Camellia sinensis var. sinensis HOM05D003266 ORTHO05D003718 1.6e-14 83.2 61 60.7
Cc04_g02800 Coffea canephora HOM05D003266 ORTHO05D003718 1.6e-14 83.2 61 63.9
Aqoxy5G00790 Aquilegia oxysepala HOM05D003266 ORTHO05D003718 2.1e-14 82.8 58 62.1
THA.LOC104817970 Tarenaya hassleriana HOM05D003266 ORTHO05D003718 2.1e-14 82.8 61 63.9
Hund06647 Selenicereus undatus HOM05D003266 ORTHO05D003718 2.7e-14 82.4 61 63.9
Lalb_Chr24g0396021 Lupinus albus HOM05D003266 ORTHO05D003718 3.5e-14 82.0 61 63.9
SHI11014 Sapria himalayana HOM05D003266 ORTHO05D003718 3.5e-14 82.0 60 61.7
Hund00661 Selenicereus undatus HOM05D003266 ORTHO05D003718 3.5e-14 82.0 61 62.3
vmacro18872 Vaccinium macrocarpon HOM05D003266 ORTHO05D003718 3.5e-14 82.0 61 62.3
AL1G60260 Arabidopsis lyrata HOM05D003266 ORTHO05D003718 4.6e-14 81.6 61 63.9
AT1G52160 Arabidopsis thaliana HOM05D003266 ORTHO05D003718 4.6e-14 81.6 61 63.9
Thhalv10019999m.g Eutrema salsugineum HOM05D003266 ORTHO05D003718 4.6e-14 81.6 61 65.6
HanXRQChr09g0275951 Helianthus annuus HOM05D003266 ORTHO05D003718 4.6e-14 81.6 61 62.3
CDE05G2267 Ceratophyllum demersum HOM05D000103 ORTHO05D000049 6.0e-14 81.3 76 52.6
COL.COLO4_29286 Corchorus olitorius HOM05D003266 ORTHO05D003718 6.0e-14 81.3 51 70.6
Hund09088 Selenicereus undatus HOM05D003266 ORTHO05D003718 6.0e-14 81.3 71 53.5
Manes.08G110200 Manihot esculenta HOM05D003266 ORTHO05D003718 7.9e-14 80.9 62 61.3
BcaB06g25715 Brassica carinata HOM05D003266 ORTHO05D003718 1.0e-13 80.5 61 65.6
C05p50250 Brassica napus HOM05D003266 ORTHO05D003718 1.0e-13 80.5 61 63.9
BolC5t33776H Brassica oleracea HOM05D003266 ORTHO05D003718 1.0e-13 80.5 61 63.9
AUR62024783 Chenopodium quinoa HOM05D003266 ORTHO05D003718 1.0e-13 80.5 61 60.7
ECA232G0114 Erigeron canadensis HOM05D003266 ORTHO05D003718 1.0e-13 80.5 61 59.0
Lj4A911T48 Lonicera japonica HOM05D003266 ORTHO05D003718 1.0e-13 80.5 78 50.0
Peaxi162Scf00034g00317 Petunia axillaris HOM05D003266 ORTHO05D003718 1.3e-13 80.1 66 59.1
Aa31LG10G2720 Aethionema arabicum HOM05D003266 ORTHO05D003718 1.7e-13 79.7 61 60.7
arahy.Tifrunner.gnm1.ann1.X5C2Q6 Arachis hypogaea HOM05D003266 ORTHO05D003718 1.7e-13 79.7 61 60.7
Carub.0003s1601 Capsella rubella HOM05D003266 ORTHO05D003718 1.7e-13 79.7 61 63.9
Medtr2g101390 Medicago truncatula HOM05D003266 ORTHO05D003718 1.7e-13 79.7 61 60.7
arahy.Tifrunner.gnm1.ann1.MP8KIY Arachis hypogaea HOM05D003266 ORTHO05D003718 2.3e-13 79.3 61 59.0
EL10Ac2g02463 Beta vulgaris HOM05D003266 ORTHO05D003718 2.3e-13 79.3 62 58.1
BcaC05g28901 Brassica carinata HOM05D003266 ORTHO05D003718 2.3e-13 79.3 61 63.9
BraA05t22151Z Brassica rapa HOM05D003266 ORTHO05D003718 2.3e-13 79.3 61 63.9
AT3G16260 Arabidopsis thaliana HOM05D003266 ORTHO05D003718 3.0e-13 79.0 61 63.9
EL10Ac9g22044 Beta vulgaris HOM05D003266 ORTHO05D003718 3.9e-13 78.6 58 60.3
AUR62032438 Chenopodium quinoa HOM05D003266 ORTHO05D003718 5.1e-13 78.2 61 59.0
Sp3g14630 Schrenkiella parvula HOM05D003266 ORTHO05D003718 5.1e-13 78.2 61 63.9
SGA_v2.0_scaffold69G23353 Striga asiatica HOM05D003266 ORTHO05D003718 5.1e-13 78.2 60 63.3
ATR0705G157 Amborella trichopoda HOM05D003266 ORTHO05D003718 8.7e-13 77.4 61 60.7
CAN.G641.69 Capsicum annuum HOM05D000432 ORTHO05D000320 8.7e-13 77.4 64 59.4
ClCG09G001800 Citrullus lanatus HOM05D003266 ORTHO05D003718 8.7e-13 77.4 58 63.8
A05p33260 Brassica napus HOM05D003266 ORTHO05D003718 1.1e-12 77.0 61 62.3
PGSC0003DMG400026462 Solanum tuberosum HOM05D003266 ORTHO05D003718 1.1e-12 77.0 66 59.1
Lalb_Chr22g0351451 Lupinus albus HOM05D003266 ORTHO05D003718 1.5e-12 76.6 61 62.3
Sopen12g022640 Solanum pennellii HOM05D003266 ORTHO05D003718 1.5e-12 76.6 58 62.1
Nitab4.5_0003039g0050 Nicotiana tabacum HOM05D003266 ORTHO05D003718 1.9e-12 76.3 58 58.6
Solyc12g044370.3 Solanum lycopersicum HOM05D003266 ORTHO05D003718 1.9e-12 76.3 66 57.6
AL3G29000 Arabidopsis lyrata HOM05D003266 ORTHO05D003718 2.5e-12 75.9 61 60.7
PSO017G5626 Papaver somniferum HOM05D003266 ORTHO05D003718 2.5e-12 75.9 60 61.7
SEGI_12386 Sequoiadendron giganteum HOM05D003266 ORTHO05D003718 3.3e-12 75.5 63 57.1
Nitab4.5_0000571g0240 Nicotiana tabacum HOM05D003266 ORTHO05D003718 1.3e-11 73.6 62 54.8
Ah.01g021810 Amaranthus hybridus HOM05D003266 ORTHO05D003718 1.6e-11 73.2 61 52.5
Solyc10g079670.2 Solanum lycopersicum HOM05D003266 ORTHO05D003718 1.6e-11 73.2 64 57.8
Sopen10g030300 Solanum pennellii HOM05D003266 ORTHO05D003718 1.6e-11 73.2 64 57.8
PSO339G2930 Papaver somniferum HOM05D003266 ORTHO05D003718 2.1e-11 72.8 60 61.7
Nitab4.5_0001147g0060 Nicotiana tabacum HOM05D003266 ORTHO05D003718 6.2e-11 71.2 62 53.2
HanXRQChr16g0501281 Helianthus annuus HOM05D003266 ORTHO05D003718 8.1e-11 70.9 62 54.8
Mapoly0003s0137 Marchantia polymorpha HOM05D003266 ORTHO05D003718 8.1e-11 70.9 68 57.4
Lsat_1_v5_gn_4_100861 Lactuca sativa HOM05D003266 ORTHO05D003718 2.4e-10 69.3 61 50.8
Oeu062565.1 Olea europaea HOM05D003266 ORTHO05D003718 2.6e-09 65.9 54 59.3
Pp3c14_3370 Physcomitrium patens HOM05D003266 ORTHO05D003718 4.9e-08 61.6 58 53.4
Psat2g178960 Pisum sativum HOM05D003266 ORTHO05D003718 2.4e-07 59.3 43 60.5
Peaxi162Scf00772g00038 Petunia axillaris HOM05D003266 ORTHO05D003718 9.3e-07 57.4 62 46.8
SMO134G0187 Selaginella moellendorffii HOM05D003266 ORTHO05D003718 9.3e-07 57.4 68 48.5


User provided reference genes

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