Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN10G2011 Fragaria x ananassa HOM05D005579 ORTHO05D006775 0.0e+00 1888.2 965 100.0
FAN01G1040 Fragaria x ananassa HOM05D005579 ORTHO05D006775 0.0e+00 1855.9 967 98.7
FAN03G0333 Fragaria x ananassa HOM05D005579 ORTHO05D006775 0.0e+00 1822.0 967 97.1
FAN03G0790 Fragaria x ananassa HOM05D005579 ORTHO05D006775 0.0e+00 1818.9 967 97.0
FvH4_7g29470 Fragaria vesca HOM05D005579 ORTHO05D006775 0.0e+00 1782.7 973 95.2
FAN06G0715 Fragaria x ananassa HOM05D005579 ORTHO05D006775 0.0e+00 1674.8 1003 88.5
FAN06G0670 Fragaria x ananassa HOM05D005579 ORTHO05D006775 0.0e+00 1661.4 1022 86.9
RcHm_v2.0_Chr1g0377251 Rosa chinensis HOM05D005579 ORTHO05D006775 0.0e+00 1476.1 994 80.3
Prupe.2G294300 Prunus persica HOM05D005579 ORTHO05D006775 0.0e+00 1146.0 991 64.7
MD07G1268700 Malus domestica HOM05D005579 ORTHO05D006775 3.3e-311 1071.6 1009 61.5
Potri.012G141100 Populus trichocarpa HOM05D005579 ORTHO05D006775 8.5e-217 758.1 991 47.3
CANSAT21G2370 Cannabis sativa HOM05D005579 ORTHO05D006775 1.4e-211 740.7 1020 47.4
Sabra12G0106200 Salix brachista HOM05D005579 ORTHO05D006775 2.0e-210 736.9 994 47.2
Cfa008319 Carpinus fangiana HOM05D005579 ORTHO05D006775 4.7e-207 725.7 1296 40.1
Manes.06G147100 Manihot esculenta HOM05D005579 ORTHO05D006775 1.1e-203 714.5 987 46.5
CiPaw.04G071000 Carya illinoinensis HOM05D005579 ORTHO05D006775 5.2e-190 669.1 1303 37.8
Ciclev10006492m.g Citrus clementina HOM05D005579 ORTHO05D006775 1.1e-179 634.8 1281 37.2
QL09p014220 Quercus lobata HOM05D005579 ORTHO05D006775 3.5e-178 629.8 1104 40.0
COL.COLO4_14309 Corchorus olitorius HOM05D005579 ORTHO05D006775 1.3e-172 611.3 1205 37.5
Duzib068G1336 Durio zibethinus HOM05D005579 ORTHO05D006775 3.2e-171 606.7 1290 36.4
Rhsim03G0180800 Rhododendron simsii HOM05D005579 ORTHO05D006775 1.6e-170 604.4 1010 42.1
Actinidia32860 Actinidia chinensis HOM05D005579 ORTHO05D006775 2.9e-169 600.1 1139 38.0
Cpa.g.sc107.52 Carica papaya HOM05D005579 ORTHO05D006775 5.2e-166 589.3 1272 36.1
TWI23G0169 Tripterygium wilfordii HOM05D005579 ORTHO05D006775 8.3e-164 582.0 1307 35.6
TAR367G0001 Trochodendron aralioides HOM05D005579 ORTHO05D006775 6.0e-162 575.9 1279 34.6
MD01G1200800 Malus domestica HOM05D005579 ORTHO05D006775 5.4e-155 552.7 671 52.5
Gohir.A12G257850 Gossypium hirsutum HOM05D005579 ORTHO05D006775 8.1e-151 538.9 1325 33.7
VMungo0464G1636 Vigna mungo HOM05D005579 ORTHO05D006775 2.6e-149 533.9 1242 34.6
Glyma.09G139400 Glycine max HOM05D005579 ORTHO05D006775 4.4e-149 533.1 1238 34.1
Gohir.D12G259200 Gossypium hirsutum HOM05D005579 ORTHO05D006775 1.3e-148 531.6 1361 33.7
Phvul.004G117000 Phaseolus vulgaris HOM05D005579 ORTHO05D006775 4.9e-148 529.6 1236 34.1
PSO782G1268 Papaver somniferum HOM05D005579 ORTHO05D006775 8.3e-148 528.9 1011 37.4
Thecc.03G176600 Theobroma cacao HOM05D005579 ORTHO05D006775 2.4e-147 527.3 1126 36.1
Lj2g0003134 Lotus japonicus HOM05D005579 ORTHO05D006775 7.1e-147 525.8 1252 34.5
PSO063G6446 Papaver somniferum HOM05D005579 ORTHO05D006775 9.2e-147 525.4 999 37.4
Gorai.008G277600 Gossypium raimondii HOM05D005579 ORTHO05D006775 3.5e-146 523.5 1361 33.5
MELO3C003322.2 Cucumis melo HOM05D005579 ORTHO05D006775 4.3e-144 516.5 1187 36.8
Nn6g33500 Nelumbo nucifera HOM05D005579 ORTHO05D006775 3.6e-143 513.5 1275 32.9
Dinv28443 Davidia involucrata HOM05D005579 ORTHO05D006775 3.4e-141 506.9 1002 37.9
Migut.F00340 Erythranthe guttata HOM05D005579 ORTHO05D006775 1.3e-140 505.0 1010 38.4
ECA232G1470 Erigeron canadensis HOM05D005579 ORTHO05D006775 2.9e-140 503.8 1024 38.2
AUR62015985 Chenopodium quinoa HOM05D005579 ORTHO05D006775 7.1e-139 499.2 958 38.1
Psat0s2227g0080 Pisum sativum HOM05D005579 ORTHO05D006775 1.6e-138 498.0 1300 32.2
DCAR_018198 Daucus carota HOM05D005579 ORTHO05D006775 3.0e-137 493.8 1173 35.9
Sed0022815 Sechium edule HOM05D005579 ORTHO05D006775 5.1e-137 493.0 1264 33.9
Lalb_Chr19g0130861 Lupinus albus HOM05D005579 ORTHO05D006775 6.6e-137 492.7 864 38.8
arahy.Tifrunner.gnm1.ann1.TEHT7Q Arachis hypogaea HOM05D005579 ORTHO05D006775 8.7e-137 492.3 789 41.2
arahy.Tifrunner.gnm1.ann1.Q0IWYL Arachis hypogaea HOM05D005579 ORTHO05D006775 1.5e-136 491.5 788 41.1
ClCG09G012930 Citrullus lanatus HOM05D005579 ORTHO05D006775 2.5e-136 490.7 1287 34.1
TPR.G10740 Trifolium pratense HOM05D005579 ORTHO05D006775 3.3e-136 490.3 1323 32.2
Lsat_1_v5_gn_9_55980 Lactuca sativa HOM05D005579 ORTHO05D006775 2.8e-135 487.3 997 37.9
Sp6g14550 Schrenkiella parvula HOM05D005579 ORTHO05D006775 6.2e-135 486.1 1247 32.4
SalBow4G2278 Salvia bowleyana HOM05D005579 ORTHO05D006775 2.4e-134 484.2 1022 37.4
CsaV3_3G049940 Cucumis sativus L. HOM05D005579 ORTHO05D006775 1.2e-133 481.9 1255 33.9
SalBow4G1821 Salvia bowleyana HOM05D005579 ORTHO05D006775 2.0e-133 481.1 1022 37.0
GSVIVG01028977001 Vitis vinifera HOM05D005579 ORTHO05D006775 1.3e-132 478.4 1178 34.5
AL8G26680 Arabidopsis lyrata HOM05D005579 ORTHO05D006775 1.9e-131 474.6 1246 32.2
AT5G52290 Arabidopsis thaliana HOM05D005579 ORTHO05D006775 9.3e-131 472.2 1243 33.0
Thhalv10015364m.g Eutrema salsugineum HOM05D005579 ORTHO05D006775 4.6e-130 469.9 1230 32.4
AUR62021193 Chenopodium quinoa HOM05D005579 ORTHO05D006775 1.7e-129 468.0 866 38.3
PGR142G3926 Punica granatum HOM05D005579 ORTHO05D006775 1.1e-128 465.3 1264 33.0
Peaxi162Scf00444g00841 Petunia axillaris HOM05D005579 ORTHO05D006775 9.6e-128 462.2 1258 31.7
AL271U10020 Arabidopsis lyrata HOM05D005579 ORTHO05D006775 2.1e-127 461.1 1255 31.9
Medtr6g045357 Medicago truncatula HOM05D005579 ORTHO05D006775 1.1e-126 458.8 1189 32.2
CARHR265270 Cardamine hirsuta HOM05D005579 ORTHO05D006775 1.2e-125 455.3 1255 31.5
HanXRQChr15g0495541 Helianthus annuus HOM05D005579 ORTHO05D006775 1.6e-122 444.9 808 40.2
C03p18410 Brassica napus HOM05D005579 ORTHO05D006775 7.9e-122 442.6 1243 31.5
Carub.0008s1239 Capsella rubella HOM05D005579 ORTHO05D006775 2.3e-121 441.0 1230 31.1
Aa31LG3G8710 Aethionema arabicum HOM05D005579 ORTHO05D006775 3.9e-121 440.3 1238 31.6
Sopen03g004630 Solanum pennellii HOM05D005579 ORTHO05D006775 3.9e-121 440.3 1251 31.8
SGA_v2.0_scaffold60G21038 Striga asiatica HOM05D005579 ORTHO05D006775 1.1e-120 438.7 1005 35.2
EL10Ac3g05643 Beta vulgaris HOM05D005579 ORTHO05D006775 4.3e-120 436.8 1310 30.7
BcaB01g04199 Brassica carinata HOM05D005579 ORTHO05D006775 2.8e-119 434.1 1230 31.3
Nitab4.5_0000716g0010 Nicotiana tabacum HOM05D005579 ORTHO05D006775 2.8e-119 434.1 1251 31.1
BcaC01g06176 Brassica carinata HOM05D005579 ORTHO05D006775 3.7e-119 433.7 1248 31.0
Sc13g0008650 Simmondsia chinensis HOM05D005579 ORTHO05D006775 3.7e-119 433.7 1054 34.4
Nitab4.5_0009681g0030 Nicotiana tabacum HOM05D005579 ORTHO05D006775 1.4e-118 431.8 1247 31.0
A03p15740 Brassica napus HOM05D005579 ORTHO05D006775 1.2e-117 428.7 1240 31.4
THA.LOC104800252 Tarenaya hassleriana HOM05D005579 ORTHO05D006775 2.9e-116 424.1 1250 31.7
Solyc03g025820.3 Solanum lycopersicum HOM05D005579 ORTHO05D006775 1.1e-115 422.2 1244 31.2
BolC3t14238H Brassica oleracea HOM05D005579 ORTHO05D006775 1.2e-114 418.7 1313 29.9
Haze_13712 Corylus avellana HOM05D005579 ORTHO05D006775 1.0e-113 415.6 333 68.8
SHI39775 Sapria himalayana HOM05D005579 ORTHO05D006775 3.9e-113 413.7 810 38.4
Atru.chr1.458 Acer truncatum HOM05D005579 ORTHO05D006775 9.6e-112 409.1 331 67.1
BraA03t10864Z Brassica rapa HOM05D005579 ORTHO05D006775 2.1e-111 407.9 1304 30.0
Ah.07g207210 Amaranthus hybridus HOM05D005579 ORTHO05D006775 7.6e-109 399.4 1269 30.3
CAN.G490.30 Capsicum annuum HOM05D005579 ORTHO05D006775 8.4e-108 396.0 1043 31.6
CSS0017636 Camellia sinensis var. sinensis HOM05D005579 ORTHO05D006775 1.0e-105 389.0 330 64.2
CSS0047196 Camellia sinensis var. sinensis HOM05D005579 ORTHO05D006775 1.0e-105 389.0 330 64.2
Cc02_g02990 Coffea canephora HOM05D005579 ORTHO05D006775 2.8e-103 380.9 1066 31.2
Hma1.2p1_0270F.1_g108020 Hydrangea macrophylla HOM05D005579 ORTHO05D006775 4.2e-99 367.1 326 62.9
MBI17_g39341_MAGBIO Magnolia biondii HOM05D005579 ORTHO05D006775 7.4e-96 356.3 339 58.4
Haze_13711 Corylus avellana HOM05D005579 ORTHO05D006775 3.2e-91 340.9 628 38.4
PGSC0003DMG400014341 Solanum tuberosum HOM05D005579 ORTHO05D006775 5.3e-86 323.6 244 66.4
Eucgr.L01677 Eucalyptus grandis HOM05D005579 ORTHO05D006775 6.5e-84 316.6 261 65.5
ATR0680G156 Amborella trichopoda HOM05D005579 ORTHO05D006775 4.5e-77 293.9 312 52.6
MBI17_g46332_MAGBIO Magnolia biondii HOM05D005579 ORTHO05D006775 1.1e-75 289.3 1094 29.4
MD01G1200900 Malus domestica HOM05D005579 ORTHO05D006775 1.3e-71 275.8 294 58.5
Zm00001eb248620 Zea mays HOM05D005579 ORTHO05D006775 5.4e-70 270.4 269 52.0
Os02g0642600 Oryza sativa ssp. japonica HOM05D005579 ORTHO05D006775 4.5e-69 267.3 327 47.1
FAN06G4680 Fragaria x ananassa HOM05D005579 ORTHO05D006775 1.4e-62 245.7 193 75.1
Ca_25744_v3 Cicer arietinum L. HOM05D005579 ORTHO05D006775 3.1e-62 244.6 465 36.1
CDE08G1090 Ceratophyllum demersum HOM05D005579 ORTHO05D006775 4.7e-58 230.7 818 27.0
HPP92_008526 Vanilla planifolia HOM05D005579 ORTHO05D006775 2.2e-55 221.9 206 58.7
FAN10G0535 Fragaria x ananassa HOM05D005579 ORTHO05D006775 2.9e-55 221.5 111 100.0
Oeu056255.1 Olea europaea HOM05D005579 ORTHO05D006775 3.2e-54 218.0 1075 25.4
FvH4_7g29490 Fragaria vesca HOM05D005579 ORTHO05D006775 2.0e-53 215.3 127 91.3
unitig_37.g12526 Utricularia gibba HOM05D005579 ORTHO05D006775 4.6e-53 214.2 944 27.0
FAN10G3029 Fragaria x ananassa HOM05D005579 ORTHO05D006775 1.8e-49 202.2 104 99.0
Actinidia34112 Actinidia chinensis HOM05D005579 ORTHO05D006775 1.6e-45 189.1 147 67.3
FAN06G4979 Fragaria x ananassa HOM05D005579 ORTHO05D006775 5.8e-40 170.6 107 87.9
SMO364G0179 Selaginella moellendorffii HOM05D005579 ORTHO05D006775 1.7e-39 169.1 233 40.8
CDE08G0179 Ceratophyllum demersum HOM05D005579 ORTHO05D006775 1.9e-38 165.6 156 60.9
Mapoly0013s0198 Marchantia polymorpha HOM05D005579 ORTHO05D006775 1.1e-33 149.8 234 38.0
Pp3c21_13440 Physcomitrium patens HOM05D005579 ORTHO05D006775 1.5e-32 146.0 576 28.3
Pp3c13_14750 Physcomitrium patens HOM05D005579 ORTHO05D006775 6.4e-31 140.6 229 37.1
Hund11748 Selenicereus undatus HOM05D005579 ORTHO05D006775 5.1e-28 131.0 113 58.4
TAR375G0314 Trochodendron aralioides HOM05D005579 ORTHO05D006775 7.3e-27 127.1 213 39.9
Haze_13709 Corylus avellana HOM05D005579 ORTHO05D006775 1.7e-23 115.9 166 46.4
FAN16G1139 Fragaria x ananassa HOM05D005579 ORTHO05D045462 1.7e-20 105.9 60 88.3
FvH4_6g30770 Fragaria vesca HOM05D005579 ORTHO05D045462 2.3e-20 105.5 61 85.2
Dinv28442 Davidia involucrata HOM05D005579 ORTHO05D006775 2.1e-18 99.0 213 35.7
QL09p014214 Quercus lobata HOM05D005579 ORTHO05D006775 3.1e-17 95.1 208 38.9
Ah.07g206970 Amaranthus hybridus HOM05D005579 ORTHO05D006775 3.0e-12 78.6 161 34.2
TPR.G17624 Trifolium pratense HOM05D005579 ORTHO05D006775 2.8e-10 72.0 148 33.8
Medtr6g045353 Medicago truncatula HOM05D005579 ORTHO05D006775 1.4e-09 69.7 107 37.4
CBR_g61457 Chara braunii HOM05D005579 ORTHO05D006775 3.1e-09 68.6 145 31.7
SEGI_30883 Sequoiadendron giganteum HOM05D005579 ORTHO05D006775 2.6e-08 65.5 507 22.9
FAN06G1979 Fragaria x ananassa HOM05D000693 ORTHO05D001102 3.4e-08 65.1 54 63.0
Lalb_Chr19g0130841 Lupinus albus HOM05D005579 ORTHO05D006775 4.5e-08 64.7 93 47.3
PSO339G5948 Papaver somniferum HOM05D007489 ORTHO05D008037 4.5e-08 64.7 300 25.7
MBI17_g46440_MAGBIO Magnolia biondii HOM05D005579 ORTHO05D048546 5.8e-08 64.3 81 43.2
COL.COLO4_31594 Corchorus olitorius HOM05D005579 ORTHO05D006775 9.9e-08 63.5 109 41.3
TPR.G31959 Trifolium pratense HOM05D061576 ORTHO05D006775 6.4e-07 60.8 254 25.2


User provided reference genes

Program Settings