Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN10G0128 Fragaria x ananassa HOM05D004509 ORTHO05D005568 1.8e-309 1065.1 538 100.0
FAN06G3392 Fragaria x ananassa HOM05D004509 ORTHO05D005568 5.1e-304 1047.0 561 95.5
FvH4_7g27570 Fragaria vesca HOM05D004509 ORTHO05D005568 2.6e-300 1034.6 590 91.0
FAN03G1842 Fragaria x ananassa HOM05D004509 ORTHO05D005568 2.4e-298 1028.1 561 93.6
FAN01G2021 Fragaria x ananassa HOM05D004509 ORTHO05D005568 7.1e-298 1026.5 561 93.6
RcHm_v2.0_Chr1g0374441 Rosa chinensis HOM05D004509 ORTHO05D005568 2.7e-289 998.0 587 88.1
Prupe.2G277400 Prunus persica HOM05D004509 ORTHO05D005568 2.5e-266 921.8 588 80.8
FAN06G0097 Fragaria x ananassa HOM05D004509 ORTHO05D005568 3.6e-265 917.9 585 84.1
MD07G1254100 Malus domestica HOM05D004509 ORTHO05D005568 1.1e-258 896.3 588 78.9
QL09p019881 Quercus lobata HOM05D004509 ORTHO05D005568 5.7e-231 804.3 591 72.4
Cfa008172 Carpinus fangiana HOM05D004509 ORTHO05D005568 3.5e-228 795.0 593 71.2
CiPaw.03G093600 Carya illinoinensis HOM05D004509 ORTHO05D005568 2.5e-226 788.9 588 70.7
CiPaw.04G060100 Carya illinoinensis HOM05D004509 ORTHO05D005568 7.3e-226 787.3 588 70.1
GSVIVG01018636001 Vitis vinifera HOM05D004509 ORTHO05D005568 4.1e-221 771.5 588 67.9
TWI23G1058 Tripterygium wilfordii HOM05D004509 ORTHO05D005568 1.2e-220 770.0 597 68.0
Thecc.03G156200 Theobroma cacao HOM05D004509 ORTHO05D005568 1.6e-220 769.6 588 69.7
Potri.001G124000 Populus trichocarpa HOM05D004509 ORTHO05D005568 2.5e-218 762.3 586 68.4
Sabra01G0095600 Salix brachista HOM05D004509 ORTHO05D005568 2.5e-218 762.3 604 66.4
Dinv28569 Davidia involucrata HOM05D004509 ORTHO05D005568 1.6e-217 759.6 594 67.8
Ciclev10004605m.g Citrus clementina HOM05D004509 ORTHO05D005568 6.2e-217 757.7 569 69.6
CSS0008253 Camellia sinensis var. sinensis HOM05D004509 ORTHO05D005568 7.5e-215 750.7 588 66.5
Manes.06G135100 Manihot esculenta HOM05D004509 ORTHO05D005568 1.7e-214 749.6 588 68.0
Gohir.A12G198700 Gossypium hirsutum HOM05D004509 ORTHO05D005568 4.9e-214 748.0 588 67.0
Gohir.D12G201400 Gossypium hirsutum HOM05D004509 ORTHO05D005568 1.1e-213 746.9 588 66.8
Gorai.008G216500 Gossypium raimondii HOM05D004509 ORTHO05D005568 1.1e-213 746.9 588 66.8
Duzib068G0492 Durio zibethinus HOM05D004509 ORTHO05D005568 7.0e-213 744.2 588 67.5
Actinidia13576 Actinidia chinensis HOM05D004509 ORTHO05D005568 1.2e-209 733.4 588 65.3
CSS0023984 Camellia sinensis var. sinensis HOM05D004509 ORTHO05D005568 4.7e-209 731.5 588 65.6
CSS0001277 Camellia sinensis var. sinensis HOM05D004509 ORTHO05D005568 6.2e-209 731.1 588 65.6
MELO3C014338.2 Cucumis melo HOM05D004509 ORTHO05D005568 1.4e-208 729.9 588 66.3
Manes.14G035800 Manihot esculenta HOM05D004509 ORTHO05D005568 1.8e-208 729.6 589 65.9
Rhsim03G0168100 Rhododendron simsii HOM05D004509 ORTHO05D005568 2.6e-207 725.7 569 66.1
Actinidia24699 Actinidia chinensis HOM05D004509 ORTHO05D005568 7.1e-205 717.6 587 65.2
Lj8C42G3 Lonicera japonica HOM05D004509 ORTHO05D005568 7.1e-205 717.6 607 64.6
TAR374G1004 Trochodendron aralioides HOM05D004509 ORTHO05D005568 7.8e-204 714.1 591 65.3
Medtr3g007760 Medicago truncatula HOM05D004509 ORTHO05D005568 1.0e-203 713.8 590 64.2
Cc02_g04230 Coffea canephora HOM05D004509 ORTHO05D005568 2.3e-203 712.6 588 63.9
Thhalv10024774m.g Eutrema salsugineum HOM05D004509 ORTHO05D005568 2.3e-203 712.6 588 64.5
Lj3g0006861 Lotus japonicus HOM05D004509 ORTHO05D005568 3.9e-203 711.8 592 64.4
Glyma.06G316600 Glycine max HOM05D004509 ORTHO05D005568 5.1e-203 711.4 588 65.5
Potri.003G109400 Populus trichocarpa HOM05D004509 ORTHO05D005568 5.1e-203 711.4 587 65.1
Sed0019493 Sechium edule HOM05D004509 ORTHO05D005568 8.6e-203 710.7 588 64.6
TPR.G12300 Trifolium pratense HOM05D004509 ORTHO05D005568 1.1e-202 710.3 592 64.0
CsaV3_6G036820 Cucumis sativus L. HOM05D004509 ORTHO05D005568 2.5e-202 709.1 588 65.3
THA.LOC104808282 Tarenaya hassleriana HOM05D004509 ORTHO05D005568 2.5e-202 709.1 588 63.8
AT4G25230 Arabidopsis thaliana HOM05D004509 ORTHO05D005568 3.3e-202 708.8 588 63.9
Sp7g23250 Schrenkiella parvula HOM05D004509 ORTHO05D005568 1.2e-201 706.8 588 63.8
CARHR232640 Cardamine hirsuta HOM05D004509 ORTHO05D005568 1.6e-201 706.4 589 64.2
Ca_14040_v3 Cicer arietinum L. HOM05D004509 ORTHO05D005568 2.1e-201 706.1 589 63.7
Psat5g226800 Pisum sativum HOM05D004509 ORTHO05D005568 2.1e-201 706.1 591 63.6
BcaB03g12459 Brassica carinata HOM05D004509 ORTHO05D005568 8.1e-201 704.1 588 63.3
Carub.0007s1579 Capsella rubella HOM05D004509 ORTHO05D005568 1.1e-200 703.7 588 63.9
AL7G27910 Arabidopsis lyrata HOM05D004509 ORTHO05D005568 1.8e-200 703.0 588 63.8
BraA08t34076Z Brassica rapa HOM05D004509 ORTHO05D005568 3.1e-200 702.2 590 64.1
Aa31sc16G230 Aethionema arabicum HOM05D004509 ORTHO05D005568 5.2e-200 701.4 588 63.8
BcaC07g38180 Brassica carinata HOM05D004509 ORTHO05D005568 8.9e-200 700.7 590 63.9
A08p21270 Brassica napus HOM05D004509 ORTHO05D005568 8.9e-200 700.7 590 63.9
BcaC06g32827 Brassica carinata HOM05D004509 ORTHO05D005568 2.0e-199 699.5 587 63.5
THA.LOC104825064 Tarenaya hassleriana HOM05D004509 ORTHO05D005568 2.0e-199 699.5 588 63.3
Eucgr.K00157 Eucalyptus grandis HOM05D004509 ORTHO05D005568 4.9e-198 694.9 594 63.6
C07p54120 Brassica napus HOM05D004509 ORTHO05D005568 1.4e-197 693.3 588 62.6
Sed0007620 Sechium edule HOM05D004509 ORTHO05D005568 1.9e-197 693.0 589 63.3
Hma1.2p1_1640F.1_g295070 Hydrangea macrophylla HOM05D004509 ORTHO05D005568 4.2e-197 691.8 589 63.7
BolC7t45898H Brassica oleracea HOM05D004509 ORTHO05D005568 9.2e-197 690.6 588 62.8
Lalb_Chr15g0079611 Lupinus albus HOM05D004509 ORTHO05D005568 2.7e-196 689.1 588 62.8
Nn6g33992 Nelumbo nucifera HOM05D004509 ORTHO05D005568 7.8e-196 687.6 606 60.4
Dinv22949 Davidia involucrata HOM05D004509 ORTHO05D005568 3.0e-195 685.6 495 70.7
vmacro06795 Vaccinium macrocarpon HOM05D004509 ORTHO05D005568 1.1e-194 683.7 581 62.3
A03p55840 Brassica napus HOM05D004509 ORTHO05D005568 1.9e-194 682.9 588 62.8
Glyma.04G130500 Glycine max HOM05D004509 ORTHO05D005568 2.4e-192 676.0 569 63.8
BraA03t14655Z Brassica rapa HOM05D004509 ORTHO05D005568 4.0e-192 675.2 587 62.2
Carub.0008s1147 Capsella rubella HOM05D004509 ORTHO05D005568 4.0e-192 675.2 587 61.7
AUR62002199 Chenopodium quinoa HOM05D004509 ORTHO05D005568 1.4e-189 666.8 575 62.3
PSO170G1118 Papaver somniferum HOM05D004509 ORTHO05D005568 1.4e-189 666.8 591 59.9
Sc13g0007910 Simmondsia chinensis HOM05D004509 ORTHO05D005568 5.4e-189 664.8 588 61.4
Rhsim03G0167900 Rhododendron simsii HOM05D004509 ORTHO05D005568 7.1e-189 664.5 554 63.7
PSO017G1204 Papaver somniferum HOM05D004509 ORTHO05D005568 1.6e-188 663.3 591 59.6
EL10Ac3g05841 Beta vulgaris HOM05D004509 ORTHO05D005568 1.3e-187 660.2 609 59.6
AT5G51450 Arabidopsis thaliana HOM05D004509 ORTHO05D005568 5.1e-187 658.3 606 59.2
Nitab4.5_0000262g0140 Nicotiana tabacum HOM05D004509 ORTHO05D005568 3.3e-186 655.6 578 59.9
Lalb_Chr18g0049081 Lupinus albus HOM05D004509 ORTHO05D005568 3.6e-185 652.1 569 62.4
CAN.G839.2 Capsicum annuum HOM05D004509 ORTHO05D005568 6.2e-185 651.4 588 59.0
Gohir.A07G041300 Gossypium hirsutum HOM05D004509 ORTHO05D005568 2.4e-184 649.4 585 61.7
ECA238G4038 Erigeron canadensis HOM05D004509 ORTHO05D005568 1.1e-181 640.6 581 59.7
AUR62015503 Chenopodium quinoa HOM05D004509 ORTHO05D005568 4.2e-181 638.6 573 59.5
HanXRQChr14g0461391 Helianthus annuus HOM05D004509 ORTHO05D005568 4.2e-181 638.6 588 59.2
Sopen06g010960 Solanum pennellii HOM05D004509 ORTHO05D005568 2.7e-180 636.0 589 58.6
Sabra03G0075900 Salix brachista HOM05D004509 ORTHO05D005568 3.5e-180 635.6 632 56.8
MSTRG.8823 Avicennia marina HOM05D004509 ORTHO05D005568 6.0e-180 634.8 588 58.7
BolC1t01999H Brassica oleracea HOM05D004509 ORTHO05D005568 7.9e-180 634.4 623 56.8
DCAR_018107 Daucus carota HOM05D004509 ORTHO05D005568 1.0e-179 634.0 586 59.4
Migut.F00473 Erythranthe guttata HOM05D004509 ORTHO05D005568 2.5e-178 629.4 587 58.4
HanXRQChr07g0205911 Helianthus annuus HOM05D004509 ORTHO05D005568 1.3e-177 627.1 593 58.9
Hund11825 Selenicereus undatus HOM05D004509 ORTHO05D005568 1.3e-177 627.1 552 60.5
Nitab4.5_0000448g0150 Nicotiana tabacum HOM05D004509 ORTHO05D005568 3.7e-177 625.5 592 57.1
Aqoxy7G00754 Aquilegia oxysepala HOM05D004509 ORTHO05D005568 1.1e-176 624.0 590 56.3
Ah.13g066850 Amaranthus hybridus HOM05D004509 ORTHO05D005568 1.8e-176 623.2 623 55.4
arahy.Tifrunner.gnm1.ann1.4JD3YM Arachis hypogaea HOM05D004509 ORTHO05D005568 1.8e-176 623.2 580 60.0
TAR375G0675 Trochodendron aralioides HOM05D004509 ORTHO05D005568 1.5e-175 620.2 588 59.4
Gohir.D07G045400 Gossypium hirsutum HOM05D004509 ORTHO05D005568 3.4e-175 619.0 529 62.9
PGR042G2749 Punica granatum HOM05D004509 ORTHO05D005568 7.6e-175 617.8 592 56.8
Peaxi162Scf00054g02212 Petunia axillaris HOM05D004509 ORTHO05D005568 1.1e-173 614.0 569 58.0
Duzib205G0424 Durio zibethinus HOM05D004509 ORTHO05D005568 7.1e-173 611.3 588 57.8
Oeu015322.1 Olea europaea HOM05D004509 ORTHO05D005568 3.5e-172 609.0 587 57.1
Hma1.2p1_1132F.1_g260350 Hydrangea macrophylla HOM05D004509 ORTHO05D005568 2.3e-171 606.3 480 66.0
Lsat_1_v5_gn_2_129181 Lactuca sativa HOM05D004509 ORTHO05D005568 3.1e-168 595.9 619 56.1
Atru.chr1.723 Acer truncatum HOM05D004509 ORTHO05D005568 1.0e-166 590.9 482 64.9
Gorai.001G048500 Gossypium raimondii HOM05D004509 ORTHO05D005568 1.7e-166 590.1 589 58.1
SGA_v2.0_scaffold70G23600 Striga asiatica HOM05D004509 ORTHO05D005568 2.3e-163 579.7 588 56.3
Oeu022490.1 Olea europaea HOM05D004509 ORTHO05D005568 1.1e-162 577.4 586 55.8
AL8G25740 Arabidopsis lyrata HOM05D004509 ORTHO05D005568 1.3e-161 573.9 457 65.0
Sp6g13610 Schrenkiella parvula HOM05D004509 ORTHO05D005568 1.0e-150 537.7 483 59.0
BraA01t01605Z Brassica rapa HOM05D004509 ORTHO05D005568 2.1e-148 530.0 496 58.7
A01p16520 Brassica napus HOM05D004509 ORTHO05D005568 1.4e-147 527.3 489 59.1
ATR0589G031 Amborella trichopoda HOM05D004509 ORTHO05D005568 3.3e-146 522.7 593 50.1
Phvul.005G010100 Phaseolus vulgaris HOM05D001952 ORTHO05D005568 6.7e-139 498.4 447 61.3
BcaC09g50792 Brassica carinata HOM05D004509 ORTHO05D005568 4.4e-138 495.7 417 62.4
Cpa.g.sc3.319 Carica papaya HOM05D004509 ORTHO05D005568 3.8e-134 482.6 345 72.2
HPP92_021040 Vanilla planifolia HOM05D004509 ORTHO05D005568 1.5e-133 480.7 586 46.8
HPP92_027424 Vanilla planifolia HOM05D004509 ORTHO05D005568 6.1e-132 475.3 586 46.6
MBI04_g44458_MAGBIO Magnolia biondii HOM05D004509 ORTHO05D005568 3.0e-123 446.4 444 56.1
MBI04_g41911_MAGBIO Magnolia biondii HOM05D004509 ORTHO05D005568 2.7e-119 433.3 536 47.9
Os07g0484300 Oryza sativa ssp. japonica HOM05D004509 ORTHO05D005568 2.7e-119 433.3 534 46.1
ClCG09G013200 Citrullus lanatus HOM05D004509 ORTHO05D005568 5.0e-118 429.1 311 71.4
Zm00001eb105020 Zea mays HOM05D004509 ORTHO05D005568 8.0e-116 421.8 579 42.5
Lalb_Chr04g0264301 Lupinus albus HOM05D004509 ORTHO05D005568 1.7e-113 414.1 342 65.5
Zm00001eb321470 Zea mays HOM05D004509 ORTHO05D005568 5.4e-112 409.1 581 41.7
Hund04598 Selenicereus undatus HOM05D004509 ORTHO05D005568 5.0e-110 402.5 359 60.2
Mapoly0141s0003 Marchantia polymorpha HOM05D004509 ORTHO05D005568 3.2e-104 383.3 613 40.0
Mapoly0259s0001 Marchantia polymorpha HOM05D004509 ORTHO05D005568 3.2e-104 383.3 613 40.0
Lsat_1_v5_gn_9_52140 Lactuca sativa HOM05D004509 ORTHO05D005568 2.7e-103 380.2 588 42.7
CDE11G0295 Ceratophyllum demersum HOM05D004509 ORTHO05D005568 1.5e-101 374.4 400 51.8
Pp3c13_9770 Physcomitrium patens HOM05D004509 ORTHO05D005568 2.3e-94 350.5 593 39.3
COL.COLO4_14126 Corchorus olitorius HOM05D004509 ORTHO05D005568 6.6e-94 349.0 517 44.1
Pp3c3_10340 Physcomitrium patens HOM05D004509 ORTHO05D005568 6.8e-91 339.0 604 39.1
SMO298G0006 Selaginella moellendorffii HOM05D004509 ORTHO05D005568 2.9e-89 333.6 574 38.0
CDE02G3300 Ceratophyllum demersum HOM05D004509 ORTHO05D005568 4.1e-88 329.7 316 54.1
Lalb_Chr04g0264311 Lupinus albus HOM05D004509 ORTHO05D005568 2.8e-84 317.0 216 71.8
SEGI_31032 Sequoiadendron giganteum HOM05D004509 ORTHO05D005568 5.1e-78 296.2 337 49.6
Lsat_1_v5_gn_3_74740 Lactuca sativa HOM05D004509 ORTHO05D005568 1.7e-65 254.6 349 45.6
Phvul.005G010300 Phaseolus vulgaris HOM05D004509 ORTHO05D005568 3.5e-63 246.9 166 72.9
Thhalv10014220m.g Eutrema salsugineum HOM05D004509 ORTHO05D005568 1.8e-62 244.6 278 49.6
BcaNung06355 Brassica carinata HOM05D004509 ORTHO05D005568 7.4e-61 239.2 209 59.3
BcaC07g38179 Brassica carinata HOM05D004509 ORTHO05D005568 7.4e-53 212.6 169 63.3
arahy.Tifrunner.gnm1.ann1.WP6JS3 Arachis hypogaea HOM05D004509 ORTHO05D005568 3.4e-50 203.8 251 51.4
Cpa.g.sc3.320 Carica papaya HOM05D004509 ORTHO05D005568 3.7e-44 183.7 163 61.3
unitig_52.g17762 Utricularia gibba HOM05D000486 ORTHO05D000375 5.3e-43 179.9 467 31.5
SEGI_41248 Sequoiadendron giganteum HOM05D004509 ORTHO05D005568 1.8e-38 164.9 233 43.3
ClCG09G013190 Citrullus lanatus HOM05D004509 ORTHO05D005568 2.5e-32 144.4 198 46.0
SEGI_07953 Sequoiadendron giganteum HOM05D004509 ORTHO05D005568 2.3e-30 137.9 136 52.9
CBR_g4830 Chara braunii HOM05D004509 ORTHO05D005568 6.7e-30 136.3 626 26.5
CDE02G0565 Ceratophyllum demersum HOM05D000698 ORTHO05D000839 8.2e-20 102.8 108 51.9
EL10Ac1g01861 Beta vulgaris HOM05D004509 ORTHO05D005568 1.0e-17 95.9 167 36.5
QL05p008713 Quercus lobata HOM05D004509 ORTHO05D023994 1.0e-17 95.9 80 65.0
Hma1.2p1_1132F.1_g260340 Hydrangea macrophylla HOM05D004509 ORTHO05D023994 3.2e-16 90.9 90 58.9
Hma1.2p1_1640F.1_g295066 Hydrangea macrophylla HOM05D004509 ORTHO05D023994 3.2e-16 90.9 90 58.9
BcaC07g38178 Brassica carinata HOM05D004509 ORTHO05D023994 7.2e-16 89.7 78 60.3
Lsat_1_v5_gn_4_100040 Lactuca sativa HOM05D004509 ORTHO05D005568 2.7e-15 87.8 112 43.8
Ca_06750_v3 Cicer arietinum L. HOM05D004509 ORTHO05D005568 3.4e-13 80.9 59 64.4
Atru.chr1.722 Acer truncatum HOM05D004509 ORTHO05D005568 2.9e-09 67.8 55 65.5
MCO15G602 Micromonas commoda HOM05D003872 ORTHO05D004592 3.2e-08 64.3 261 23.4
Os06g0301000 Oryza sativa ssp. japonica HOM05D003872 ORTHO05D004592 2.1e-07 61.6 288 24.3
SEGI_15145 Sequoiadendron giganteum HOM05D003872 ORTHO05D004592 1.0e-06 59.3 305 23.6
Carub.0002s1027 Capsella rubella HOM05D003872 ORTHO05D004592 3.0e-06 57.8 357 23.5
ATR0743G218 Amborella trichopoda HOM05D003872 ORTHO05D004592 6.8e-06 56.6 249 25.3
RcHm_v2.0_Chr1g0384051 Rosa chinensis HOM05D003872 ORTHO05D004592 6.8e-06 56.6 309 24.3
SMO116G0390 Selaginella moellendorffii HOM05D003872 ORTHO05D004592 6.8e-06 56.6 268 22.0


User provided reference genes

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