Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN09G4523 Fragaria x ananassa HOM05D004689 ORTHO05D006269 3.0e-167 592.0 363 100.0
FAN14G4883 Fragaria x ananassa HOM05D004689 ORTHO05D006269 2.3e-146 522.7 364 86.5
FAN02G2373 Fragaria x ananassa HOM05D004689 ORTHO05D006269 6.8e-143 511.1 356 85.4
FAN05G3347 Fragaria x ananassa HOM05D004689 ORTHO05D006269 7.5e-142 507.7 372 82.8
FAN05G0091 Fragaria x ananassa HOM05D004689 ORTHO05D006269 9.8e-142 507.3 372 83.1
RcHm_v2.0_Chr7g0191101 Rosa chinensis HOM05D004689 ORTHO05D006269 2.0e-131 473.0 361 77.8
TAR369G0565 Trochodendron aralioides HOM05D004689 ORTHO05D006269 1.5e-126 456.8 360 81.9
TAR633G1835 Trochodendron aralioides HOM05D004689 ORTHO05D006269 2.2e-125 453.0 360 81.4
MSTRG.19190 Avicennia marina HOM05D004689 ORTHO05D006269 3.7e-125 452.2 351 81.5
RcHm_v2.0_Chr3g0470901 Rosa chinensis HOM05D004689 ORTHO05D006269 3.7e-125 452.2 365 81.4
Atru.chr8.1747 Acer truncatum HOM05D004689 ORTHO05D006269 2.4e-124 449.5 367 80.1
Prupe.7G125300 Prunus persica HOM05D004689 ORTHO05D006269 2.4e-124 449.5 349 83.4
arahy.Tifrunner.gnm1.ann1.0YCB9L Arachis hypogaea HOM05D004689 ORTHO05D006269 3.2e-124 449.1 254 90.2
arahy.Tifrunner.gnm1.ann1.98D3Z3 Arachis hypogaea HOM05D004689 ORTHO05D006269 3.2e-124 449.1 254 90.2
PGSC0003DMG400003874 Solanum tuberosum HOM05D004689 ORTHO05D006269 1.6e-123 446.8 357 77.3
Cfa021476 Carpinus fangiana HOM05D004689 ORTHO05D006269 2.1e-123 446.4 364 79.9
Peaxi162Scf00407g00631 Petunia axillaris HOM05D004689 ORTHO05D006269 2.7e-123 446.0 357 76.2
CANSAT80G2663 Cannabis sativa HOM05D004689 ORTHO05D006269 1.0e-122 444.1 254 89.0
Phvul.005G180000 Phaseolus vulgaris HOM05D004689 ORTHO05D006269 1.3e-122 443.7 254 88.6
VMungo0917G0001 Vigna mungo HOM05D004689 ORTHO05D006269 1.7e-122 443.4 254 89.0
QL03p020097 Quercus lobata HOM05D004689 ORTHO05D006269 2.3e-122 443.0 254 88.6
CsaV3_3G036230 Cucumis sativus L. HOM05D004689 ORTHO05D006269 3.0e-122 442.6 357 84.9
Lalb_Chr04g0254861 Lupinus albus HOM05D004689 ORTHO05D006269 8.6e-122 441.0 253 88.5
MD12G1106500 Malus domestica HOM05D004689 ORTHO05D006269 1.5e-121 440.3 357 78.4
Nn6g35217 Nelumbo nucifera HOM05D004689 ORTHO05D006269 1.5e-121 440.3 374 78.1
CiPaw.10G001700 Carya illinoinensis HOM05D004689 ORTHO05D006269 9.5e-121 437.6 254 88.2
EL10Ac7g16690 Beta vulgaris HOM05D004689 ORTHO05D006269 1.6e-120 436.8 362 76.8
MELO3C009381.2 Cucumis melo HOM05D004689 ORTHO05D006269 1.6e-120 436.8 366 82.5
Sed0022535 Sechium edule HOM05D004689 ORTHO05D006269 1.6e-120 436.8 347 79.0
Ca_23152_v3 Cicer arietinum L. HOM05D004689 ORTHO05D006269 2.8e-120 436.0 255 87.5
Glyma.13G367400 Glycine max HOM05D004689 ORTHO05D006269 3.6e-120 435.6 254 87.4
GSVIVG01033687001 Vitis vinifera HOM05D004689 ORTHO05D006269 4.7e-120 435.3 248 88.7
Glyma.15G005900 Glycine max HOM05D004689 ORTHO05D006269 1.4e-119 433.7 360 80.6
Actinidia32476 Actinidia chinensis HOM05D004689 ORTHO05D006269 2.3e-119 433.0 254 87.4
CSS0004382 Camellia sinensis var. sinensis HOM05D004689 ORTHO05D006269 3.1e-119 432.6 254 86.6
CSS0024828 Camellia sinensis var. sinensis HOM05D004689 ORTHO05D006269 3.1e-119 432.6 254 86.6
Lj3g0015942 Lotus japonicus HOM05D004689 ORTHO05D006269 3.1e-119 432.6 254 86.6
unitig_26.g9238 Utricularia gibba HOM05D004689 ORTHO05D006269 3.1e-119 432.6 245 88.2
Ah.08g211440 Amaranthus hybridus HOM05D004689 ORTHO05D006269 5.2e-119 431.8 357 79.3
Ah.15g091430 Amaranthus hybridus HOM05D004689 ORTHO05D006269 5.2e-119 431.8 253 87.0
Solyc09g008470.4 Solanum lycopersicum HOM05D004689 ORTHO05D006269 6.8e-119 431.4 254 85.8
AUR62026953 Chenopodium quinoa HOM05D004689 ORTHO05D006269 8.9e-119 431.0 253 85.8
Medtr8g009970 Medicago truncatula HOM05D004689 ORTHO05D006269 8.9e-119 431.0 255 85.9
Duzib128G1555 Durio zibethinus HOM05D004689 ORTHO05D006269 1.2e-118 430.6 364 74.7
Potri.016G097600 Populus trichocarpa HOM05D004689 ORTHO05D006269 1.2e-118 430.6 365 77.8
Hund19382 Selenicereus undatus HOM05D004689 ORTHO05D006269 1.2e-118 430.6 254 86.6
Lalb_Chr10g0099851 Lupinus albus HOM05D004689 ORTHO05D006269 2.0e-118 429.9 364 75.0
Potri.006G121300 Populus trichocarpa HOM05D004689 ORTHO05D006269 2.6e-118 429.5 364 76.9
Lsat_1_v5_gn_1_52460 Lactuca sativa HOM05D004689 ORTHO05D006269 5.8e-118 428.3 247 87.9
PSO675G8307 Papaver somniferum HOM05D004689 ORTHO05D006269 1.7e-117 426.8 350 76.0
Sopen09g003300 Solanum pennellii HOM05D004689 ORTHO05D006269 1.7e-117 426.8 357 78.2
TPR.G17360 Trifolium pratense HOM05D004689 ORTHO05D006269 1.7e-117 426.8 249 87.6
DCAR_020804 Daucus carota HOM05D004689 ORTHO05D006269 3.7e-117 425.6 360 77.5
Ciclev10012150m.g Citrus clementina HOM05D004689 ORTHO05D006269 4.9e-117 425.2 243 88.9
RhsimUnG0004400 Rhododendron simsii HOM05D004689 ORTHO05D006269 6.4e-117 424.9 254 86.2
RhsimUnG0067800 Rhododendron simsii HOM05D004689 ORTHO05D006269 6.4e-117 424.9 254 86.2
Sc20g0005690 Simmondsia chinensis HOM05D004689 ORTHO05D006269 6.4e-117 424.9 254 85.0
TWI74G0641 Tripterygium wilfordii HOM05D004689 ORTHO05D006269 6.4e-117 424.9 365 76.4
SGA_v2.0_scaffold40G15470 Striga asiatica HOM05D004689 ORTHO05D006269 8.3e-117 424.5 364 74.5
Eucgr.K02436 Eucalyptus grandis HOM05D004689 ORTHO05D006269 2.4e-116 422.9 234 91.0
CDE06G0795 Ceratophyllum demersum HOM05D004689 ORTHO05D006269 3.2e-116 422.5 254 84.6
PSO541G4270 Papaver somniferum HOM05D004689 ORTHO05D006269 5.4e-116 421.8 350 76.9
PGR119G0162 Punica granatum HOM05D004689 ORTHO05D006269 9.2e-116 421.0 235 88.9
ECA238G3499 Erigeron canadensis HOM05D004689 ORTHO05D006269 1.6e-115 420.2 247 87.4
CDE03G0163 Ceratophyllum demersum HOM05D004689 ORTHO05D006269 3.5e-115 419.1 256 84.8
Gohir.D09G140400 Gossypium hirsutum HOM05D004689 ORTHO05D006269 3.5e-115 419.1 356 77.8
Gorai.006G161000 Gossypium raimondii HOM05D004689 ORTHO05D006269 3.5e-115 419.1 356 77.8
Nitab4.5_0003314g0100 Nicotiana tabacum HOM05D004689 ORTHO05D006269 6.0e-115 418.3 356 78.9
Migut.J00456 Erythranthe guttata HOM05D004689 ORTHO05D006269 7.8e-115 417.9 255 83.9
Gohir.A09G144600 Gossypium hirsutum HOM05D004689 ORTHO05D006269 3.0e-114 416.0 356 77.5
Thecc.05G071600 Theobroma cacao HOM05D004689 ORTHO05D006269 3.0e-114 416.0 234 88.9
Thecc.05G071900 Theobroma cacao HOM05D004689 ORTHO05D006269 3.0e-114 416.0 234 88.9
Oeu042111.1 Olea europaea HOM05D004689 ORTHO05D006269 5.1e-114 415.2 356 73.6
Aa31LG5G4730 Aethionema arabicum HOM05D004689 ORTHO05D006269 1.1e-113 414.1 247 85.4
Aqoxy2G01650 Aquilegia oxysepala HOM05D004689 ORTHO05D006269 1.1e-113 414.1 232 89.7
Hma1.2p1_0225F.1_g095000 Hydrangea macrophylla HOM05D004689 ORTHO05D006269 1.5e-113 413.7 367 76.0
CARHR126450 Cardamine hirsuta HOM05D004689 ORTHO05D006269 1.9e-113 413.3 240 86.2
COL.COLO4_26909 Corchorus olitorius HOM05D004689 ORTHO05D006269 4.3e-113 412.1 232 88.8
THA.LOC104816037 Tarenaya hassleriana HOM05D004689 ORTHO05D006269 9.5e-113 411.0 240 85.8
ClCG10G019870 Citrullus lanatus HOM05D004689 ORTHO05D006269 2.8e-112 409.5 377 76.9
AL4G28000 Arabidopsis lyrata HOM05D004689 ORTHO05D006269 8.9e-111 404.4 240 85.0
HanXRQChr13g0402661 Helianthus annuus HOM05D004689 ORTHO05D006269 1.5e-110 403.7 232 87.1
Sp4g14930 Schrenkiella parvula HOM05D004689 ORTHO05D006269 2.6e-110 402.9 242 83.5
AT2G32600 Arabidopsis thaliana HOM05D004689 ORTHO05D006269 4.4e-110 402.1 240 84.6
Carub.0004s1393 Capsella rubella HOM05D004689 ORTHO05D006269 4.4e-110 402.1 240 84.6
Sabra06G0095500 Salix brachista HOM05D004689 ORTHO05D006269 5.8e-110 401.7 439 63.1
C04p17070 Brassica napus HOM05D004689 ORTHO05D006269 7.1e-108 394.8 240 82.1
BolC4t23259H Brassica oleracea HOM05D004689 ORTHO05D006269 7.1e-108 394.8 240 82.1
A05p13300 Brassica napus HOM05D004689 ORTHO05D006269 9.2e-108 394.4 240 82.1
BraA05t20271Z Brassica rapa HOM05D004689 ORTHO05D006269 9.2e-108 394.4 240 82.1
Lj3C990G15 Lonicera japonica HOM05D004689 ORTHO05D006269 9.2e-108 394.4 221 89.6
Thhalv10017051m.g Eutrema salsugineum HOM05D004689 ORTHO05D006269 2.1e-107 393.3 240 82.9
Zm00001eb398100 Zea mays HOM05D004689 ORTHO05D006269 2.1e-107 393.3 251 79.3
HPP92_017214 Vanilla planifolia HOM05D004689 ORTHO05D006269 2.7e-107 392.9 361 75.6
AagrBONN_evm.TU.Sc2ySwM_344.454 Anthoceros agrestis HOM05D004689 ORTHO05D006269 4.6e-107 392.1 244 83.2
Cc06_g04560 Coffea canephora HOM05D004689 ORTHO05D006269 1.7e-106 390.2 431 62.4
Mapoly0069s0004 Marchantia polymorpha HOM05D004689 ORTHO05D006269 1.9e-105 386.7 254 78.3
Pp3c15_8160 Physcomitrium patens HOM05D004689 ORTHO05D006269 2.5e-105 386.3 245 81.6
MD04G1088800 Malus domestica HOM05D004689 ORTHO05D006269 1.4e-103 380.6 220 88.6
Pp3c9_13030 Physcomitrium patens HOM05D004689 ORTHO05D006269 1.4e-103 380.6 254 78.3
Zm00001eb011590 Zea mays HOM05D004689 ORTHO05D006269 1.5e-102 377.1 250 77.6
Os03g0263500 Oryza sativa ssp. japonica HOM05D004689 ORTHO05D006269 4.9e-101 372.1 244 76.2
CBR_g54837 Chara braunii HOM05D004689 ORTHO05D006269 8.4e-101 371.3 272 72.1
SMO228G0117 Selaginella moellendorffii HOM05D004689 ORTHO05D006269 6.0e-99 365.2 255 75.3
CAN.G1038.16 Capsicum annuum HOM05D004689 ORTHO05D006269 2.0e-94 350.1 304 77.0
Carub.0007s3257 Capsella rubella HOM05D004689 ORTHO05D006269 1.9e-92 343.6 243 74.5
AagrBONN_evm.TU.Sc2ySwM_344.3364 Anthoceros agrestis HOM05D004689 ORTHO05D006269 2.5e-89 333.2 193 87.6
Prupe.4G071900 Prunus persica HOM05D004689 ORTHO05D006269 9.0e-87 324.7 240 72.5
Psat1g060440 Pisum sativum HOM05D004689 ORTHO05D006269 5.8e-86 322.0 354 53.4
MCO12G316 Micromonas commoda HOM05D004689 ORTHO05D006269 2.2e-85 320.1 252 66.7
Manes.09G064318 Manihot esculenta HOM05D004689 ORTHO05D006269 8.4e-85 318.2 176 89.2
Cre06.g252700 Chlamydomonas reinhardtii HOM05D004689 ORTHO05D006269 1.6e-83 313.9 241 67.2
FvH4_6g16880 Fragaria vesca HOM05D004689 ORTHO05D006269 2.1e-83 313.5 175 91.4
vmacro08797 Vaccinium macrocarpon HOM05D004689 ORTHO05D006269 3.0e-82 309.7 571 38.4
Cpa.g.sc87.109 Carica papaya HOM05D004689 ORTHO05D006269 7.6e-78 295.0 360 64.2
PRCOL_00004335 Prasinoderma coloniale HOM05D004689 ORTHO05D006269 3.0e-74 283.1 230 62.6
SHI12393 Sapria himalayana HOM05D004689 ORTHO05D006269 1.1e-73 281.2 259 63.3
Psat6g037120 Pisum sativum HOM05D005082 ORTHO05D006474 4.8e-72 275.8 225 66.7
Dinv35815 Davidia involucrata HOM05D004689 ORTHO05D006269 5.9e-70 268.9 150 88.0
Haze_26764 Corylus avellana HOM05D004689 ORTHO05D006269 5.0e-69 265.8 201 68.2
Haze_19437 Corylus avellana HOM05D004689 ORTHO05D006269 2.2e-64 250.4 245 75.5
Dinv37340 Davidia involucrata HOM05D004689 ORTHO05D006269 3.2e-60 236.5 144 84.0
AUR62043425 Chenopodium quinoa HOM05D004689 ORTHO05D006269 2.7e-59 233.4 236 55.5
Nitab4.5_0002373g0090 Nicotiana tabacum HOM05D004689 ORTHO05D006269 5.9e-54 215.7 214 78.0
BcaB02g10459 Brassica carinata HOM05D004689 ORTHO05D006269 2.9e-53 213.4 207 59.9
AUR62043819 Chenopodium quinoa HOM05D004689 ORTHO05D006269 4.7e-51 206.1 108 90.7
Haze_05755 Corylus avellana HOM05D004689 ORTHO05D006269 6.1e-51 205.7 138 77.5
MBI17_g39322_MAGBIO Magnolia biondii HOM05D004689 ORTHO05D006269 1.0e-50 204.9 119 87.4
SEGI_10194 Sequoiadendron giganteum HOM05D004689 ORTHO05D006269 1.8e-50 204.1 235 64.3
VMungo0219G0001 Vigna mungo HOM05D004689 ORTHO05D006269 3.9e-50 203.0 119 87.4
ATR0118G008 Amborella trichopoda HOM05D004689 ORTHO05D006269 1.5e-49 201.1 120 85.0
Actinidia31313 Actinidia chinensis HOM05D004689 ORTHO05D006269 2.8e-48 196.8 102 92.2
TAR636G1083 Trochodendron aralioides HOM05D004689 ORTHO05D006269 2.6e-46 190.3 119 81.5
Nitab4.5_0000349g0010 Nicotiana tabacum HOM05D004689 ORTHO05D006269 6.5e-45 185.7 118 81.4
MBI17_g39319_MAGBIO Magnolia biondii HOM05D004689 ORTHO05D006269 1.6e-43 181.0 224 74.1
SMO031G0002 Selaginella moellendorffii HOM05D004689 ORTHO05D006269 8.8e-42 175.3 104 84.6
AagrBONN_evm.TU.Sc2ySwM_344.3466 Anthoceros agrestis HOM05D004689 ORTHO05D006269 1.4e-39 167.9 136 67.6
Cc00_g23430 Coffea canephora HOM05D004689 ORTHO05D006269 1.8e-39 167.5 107 81.3
Cc00_g35330 Coffea canephora HOM05D004689 ORTHO05D006269 1.6e-38 164.5 107 80.4
Haze_06063 Corylus avellana HOM05D004689 ORTHO05D023802 1.6e-38 164.5 203 63.5
ATR0118G005 Amborella trichopoda HOM05D004689 ORTHO05D006269 3.8e-37 159.8 220 68.6
Psat0s2549g0120 Pisum sativum HOM05D004689 ORTHO05D006269 1.2e-33 148.3 83 85.5
Psat1g060480 Pisum sativum HOM05D004689 ORTHO05D006269 5.0e-29 132.9 83 79.5
Psat1g060520 Pisum sativum HOM05D004689 ORTHO05D006269 5.0e-29 132.9 83 79.5
Nitab4.5_0000349g0040 Nicotiana tabacum HOM05D004689 ORTHO05D006269 2.2e-24 117.5 91 69.2
Psat1g060600 Pisum sativum HOM05D004689 ORTHO05D006269 5.0e-21 106.3 58 87.9
Haze_13658 Corylus avellana HOM05D004689 ORTHO05D023802 1.6e-19 101.3 172 64.5
Pp3c4_2800 Physcomitrium patens HOM05D004689 ORTHO05D006269 1.4e-18 98.2 123 54.5
Haze_08899 Corylus avellana HOM05D004689 ORTHO05D165887 1.8e-10 71.2 164 65.9
MSTRG.5777 Avicennia marina HOM05D004689 ORTHO05D023802 3.1e-10 70.5 144 59.7
Dinv25427 Davidia involucrata HOM05D004689 ORTHO05D182071 3.1e-10 70.5 53 67.9
Psat4g215720 Pisum sativum HOM05D002324 ORTHO05D002380 3.1e-10 70.5 50 74.0
Dinv44323 Davidia involucrata HOM05D004689 ORTHO05D183653 5.2e-10 69.7 38 89.5
Haze_08645 Corylus avellana HOM05D004689 ORTHO05D023802 1.4e-07 61.6 40 75.0
Dinv29092 Davidia involucrata HOM05D004689 ORTHO05D185927 5.4e-07 59.7 45 64.4
Haze_05345 Corylus avellana HOM05D004689 ORTHO05D023802 1.2e-06 58.5 142 59.2


User provided reference genes

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