Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN09G3499 Fragaria x ananassa HOM05D005691 ORTHO05D007096 0.0e+00 2603.2 1309 100.0
FvH4_6g40930 Fragaria vesca HOM05D005691 ORTHO05D007096 0.0e+00 2532.7 1309 97.2
FAN14G0170 Fragaria x ananassa HOM05D005691 ORTHO05D007096 0.0e+00 2528.8 1309 97.1
FAN05G1189 Fragaria x ananassa HOM05D005691 ORTHO05D007096 0.0e+00 2521.1 1309 97.0
FAN02G1659 Fragaria x ananassa HOM05D005691 ORTHO05D007096 0.0e+00 2479.1 1324 94.8
RcHm_v2.0_Chr2g0156551 Rosa chinensis HOM05D005691 ORTHO05D007096 0.0e+00 2372.4 1312 90.7
Prupe.3G200800 Prunus persica HOM05D005691 ORTHO05D007096 0.0e+00 2162.1 1317 82.5
MD17G1113600 Malus domestica HOM05D005691 ORTHO05D007096 0.0e+00 2109.3 1316 80.5
QL08p028494 Quercus lobata HOM05D005691 ORTHO05D007096 0.0e+00 1855.1 1326 71.3
Haze_12684 Corylus avellana HOM05D005691 ORTHO05D007096 0.0e+00 1842.4 1327 70.8
CANSAT64G0049 Cannabis sativa HOM05D005691 ORTHO05D007096 0.0e+00 1810.0 1330 70.1
CiPaw.03G279200 Carya illinoinensis HOM05D005691 ORTHO05D007096 0.0e+00 1783.5 1329 68.2
Thecc.01G191500 Theobroma cacao HOM05D005691 ORTHO05D007096 0.0e+00 1746.1 1330 66.5
CSS0040753 Camellia sinensis var. sinensis HOM05D005691 ORTHO05D007096 0.0e+00 1744.6 1334 66.0
Manes.12G061100 Manihot esculenta HOM05D005691 ORTHO05D007096 0.0e+00 1734.9 1331 66.7
Atru.chr6.3368 Acer truncatum HOM05D005691 ORTHO05D007096 0.0e+00 1730.3 1337 67.8
Actinidia21444 Actinidia chinensis HOM05D005691 ORTHO05D007096 0.0e+00 1728.4 1333 66.5
Gohir.A07G191000 Gossypium hirsutum HOM05D005691 ORTHO05D007096 0.0e+00 1721.4 1331 65.3
Ciclev10014054m.g Citrus clementina HOM05D005691 ORTHO05D007096 0.0e+00 1704.1 1330 66.4
Glyma.14G008200 Glycine max HOM05D005691 ORTHO05D007096 0.0e+00 1680.2 1324 65.1
Potri.002G221300 Populus trichocarpa HOM05D005691 ORTHO05D007096 0.0e+00 1679.5 1324 65.3
arahy.Tifrunner.gnm1.ann1.2CK2M8 Arachis hypogaea HOM05D005691 ORTHO05D007096 0.0e+00 1675.2 1338 65.0
vmacro09398 Vaccinium macrocarpon HOM05D005691 ORTHO05D007096 0.0e+00 1671.8 1396 61.2
arahy.Tifrunner.gnm1.ann1.5BD1HA Arachis hypogaea HOM05D005691 ORTHO05D007096 0.0e+00 1664.4 1338 64.8
Lj8A134T75 Lonicera japonica HOM05D005691 ORTHO05D007096 0.0e+00 1661.7 1332 63.7
CSS0009966 Camellia sinensis var. sinensis HOM05D005691 ORTHO05D007096 0.0e+00 1661.4 1285 65.1
Eucgr.A01048 Eucalyptus grandis HOM05D005691 ORTHO05D007096 0.0e+00 1658.3 1329 64.0
Glyma.02G305200 Glycine max HOM05D005691 ORTHO05D007096 0.0e+00 1657.9 1326 64.4
Nitab4.5_0009877g0010 Nicotiana tabacum HOM05D005691 ORTHO05D007096 0.0e+00 1654.8 1335 63.8
Psat2g005000 Pisum sativum HOM05D005691 ORTHO05D007096 0.0e+00 1651.7 1330 64.8
GSVIVG01030051001 Vitis vinifera HOM05D005691 ORTHO05D007096 0.0e+00 1650.6 1330 64.4
Sabra02G0169100 Salix brachista HOM05D005691 ORTHO05D007096 0.0e+00 1644.8 1367 62.9
LjContig00081g0016683 Lotus japonicus HOM05D005691 ORTHO05D007096 0.0e+00 1633.6 1322 63.7
Ca_06452_v3 Cicer arietinum L. HOM05D005691 ORTHO05D007096 0.0e+00 1633.2 1318 63.9
Cc00_g04460 Coffea canephora HOM05D005691 ORTHO05D007096 0.0e+00 1631.3 1345 61.6
Lalb_Chr10g0107611 Lupinus albus HOM05D005691 ORTHO05D007096 0.0e+00 1630.5 1325 63.5
PGSC0003DMG400006150 Solanum tuberosum HOM05D005691 ORTHO05D007096 0.0e+00 1630.5 1336 62.7
Hma1.2p1_0133F.1_g061380 Hydrangea macrophylla HOM05D005691 ORTHO05D007096 0.0e+00 1627.8 1244 65.8
TWI18G1215 Tripterygium wilfordii HOM05D005691 ORTHO05D007096 0.0e+00 1627.8 1327 63.0
PGR042G3586 Punica granatum HOM05D005691 ORTHO05D007096 0.0e+00 1626.3 1333 63.8
Sopen07g024300 Solanum pennellii HOM05D005691 ORTHO05D007096 0.0e+00 1624.0 1335 62.5
Nitab4.5_0000441g0080 Nicotiana tabacum HOM05D005691 ORTHO05D007096 0.0e+00 1622.8 1335 62.7
TPR.G1235 Trifolium pratense HOM05D005691 ORTHO05D007096 0.0e+00 1622.8 1336 64.0
Rhsim04G0038700 Rhododendron simsii HOM05D005691 ORTHO05D007096 0.0e+00 1621.7 1475 57.9
Medtr5g097260 Medicago truncatula HOM05D005691 ORTHO05D007096 0.0e+00 1619.0 1327 63.6
Peaxi162Scf00776g00233 Petunia axillaris HOM05D005691 ORTHO05D007096 0.0e+00 1617.1 1344 62.1
Phvul.008G284900 Phaseolus vulgaris HOM05D005691 ORTHO05D007096 0.0e+00 1616.7 1327 63.3
Gohir.D07G197400 Gossypium hirsutum HOM05D005691 ORTHO05D007096 0.0e+00 1612.8 1216 66.3
Gorai.001G221100 Gossypium raimondii HOM05D005691 ORTHO05D007096 0.0e+00 1610.1 1216 66.4
VMungo0647G0393 Vigna mungo HOM05D005691 ORTHO05D007096 0.0e+00 1606.7 1326 62.9
ClCG02G002780 Citrullus lanatus HOM05D005691 ORTHO05D007096 0.0e+00 1605.1 1337 62.3
CAN.G854.9 Capsicum annuum HOM05D005691 ORTHO05D007096 0.0e+00 1598.2 1340 61.6
PSO675G5893 Papaver somniferum HOM05D005691 ORTHO05D007096 0.0e+00 1588.5 1340 61.2
MELO3C024202.2 Cucumis melo HOM05D005691 ORTHO05D007096 0.0e+00 1579.7 1335 61.4
CsaV3_7G002600 Cucumis sativus L. HOM05D005691 ORTHO05D007096 0.0e+00 1565.1 1338 60.9
AUR62015058 Chenopodium quinoa HOM05D005691 ORTHO05D007096 0.0e+00 1560.8 1334 60.6
AUR62017514 Chenopodium quinoa HOM05D005691 ORTHO05D007096 0.0e+00 1558.1 1334 60.5
Nn1g07449 Nelumbo nucifera HOM05D005691 ORTHO05D007096 0.0e+00 1549.3 1325 61.1
Sc21g0000790 Simmondsia chinensis HOM05D005691 ORTHO05D007096 0.0e+00 1548.1 1335 59.9
MBI16_g26390_MAGBIO Magnolia biondii HOM05D005691 ORTHO05D007096 0.0e+00 1538.5 1334 59.8
Sed0003649 Sechium edule HOM05D005691 ORTHO05D007096 0.0e+00 1538.1 1336 60.5
MSTRG.6644 Avicennia marina HOM05D005691 ORTHO05D007096 0.0e+00 1533.9 1337 58.9
Hund01594 Selenicereus undatus HOM05D005691 ORTHO05D007096 0.0e+00 1533.9 1332 59.4
EL10Ac9g22718 Beta vulgaris HOM05D005691 ORTHO05D007096 0.0e+00 1531.5 1333 59.9
Oeu029977.1 Olea europaea HOM05D005691 ORTHO05D007096 0.0e+00 1524.6 1319 59.3
Aqoxy4G02218 Aquilegia oxysepala HOM05D005691 ORTHO05D007096 0.0e+00 1521.1 1342 59.5
ECA240G2675 Erigeron canadensis HOM05D005691 ORTHO05D007096 0.0e+00 1518.8 1333 58.4
THA.LOC104815358 Tarenaya hassleriana HOM05D005691 ORTHO05D007096 0.0e+00 1514.2 1333 59.7
Dinv07866 Davidia involucrata HOM05D005691 ORTHO05D007096 0.0e+00 1506.5 1333 60.2
DCAR_019708 Daucus carota HOM05D005691 ORTHO05D007096 0.0e+00 1505.3 1325 58.2
HanXRQChr03g0075241 Helianthus annuus HOM05D005691 ORTHO05D007096 0.0e+00 1504.2 1333 58.6
Migut.M00032 Erythranthe guttata HOM05D005691 ORTHO05D007096 0.0e+00 1487.2 1333 58.0
AL3G42730 Arabidopsis lyrata HOM05D005691 ORTHO05D007096 0.0e+00 1458.0 1320 58.0
Thhalv10003521m.g Eutrema salsugineum HOM05D005691 ORTHO05D007096 0.0e+00 1444.5 1330 57.7
Carub.0003s2665 Capsella rubella HOM05D005691 ORTHO05D007096 0.0e+00 1435.6 1328 57.0
Sp3g23610 Schrenkiella parvula HOM05D005691 ORTHO05D007096 0.0e+00 1409.4 1330 56.7
BraA03t13590Z Brassica rapa HOM05D005691 ORTHO05D007096 0.0e+00 1407.9 1311 57.4
BcaB08g34496 Brassica carinata HOM05D005691 ORTHO05D007096 0.0e+00 1406.7 1326 57.0
A03p44570 Brassica napus HOM05D005691 ORTHO05D007096 0.0e+00 1404.4 1311 57.2
C03p55370 Brassica napus HOM05D005691 ORTHO05D007096 0.0e+00 1401.0 1311 56.8
BcaC01g03178 Brassica carinata HOM05D005691 ORTHO05D007096 0.0e+00 1397.9 1311 56.7
BolC3t17809H Brassica oleracea HOM05D005691 ORTHO05D007096 0.0e+00 1397.9 1311 56.7
BcaB06g26838 Brassica carinata HOM05D005691 ORTHO05D007096 0.0e+00 1382.9 1329 56.4
SalBow7G1588 Salvia bowleyana HOM05D005691 ORTHO05D007096 0.0e+00 1377.1 1339 55.6
Lsat_1_v5_gn_9_104801 Lactuca sativa HOM05D005691 ORTHO05D007096 0.0e+00 1374.0 1325 54.7
SGA_v2.0_scaffold73G24511 Striga asiatica HOM05D005691 ORTHO05D007096 0.0e+00 1369.4 1264 55.9
ATR1149G135 Amborella trichopoda HOM05D005691 ORTHO05D007096 0.0e+00 1367.4 1314 54.4
SGA_v2.0_scaffold292G47401 Striga asiatica HOM05D005691 ORTHO05D007096 0.0e+00 1267.3 1321 52.5
CARHR103010 Cardamine hirsuta HOM05D005691 ORTHO05D007096 0.0e+00 1265.4 1078 60.9
Os03g0225500 Oryza sativa ssp. japonica HOM05D005691 ORTHO05D007096 0.0e+00 1239.2 1328 50.2
Zm00001eb399630 Zea mays HOM05D005691 ORTHO05D007096 0.0e+00 1232.6 1336 51.3
SGA_v2.0_scaffold292G47412 Striga asiatica HOM05D005691 ORTHO05D007096 0.0e+00 1210.7 1321 50.5
TAR626G1898 Trochodendron aralioides HOM05D005691 ORTHO05D007096 0.0e+00 1207.6 986 63.4
AT2G05120 Arabidopsis thaliana HOM05D005691 ORTHO05D007096 0.0e+00 1206.4 985 62.4
Hma1.2p1_0133F.1_g061370 Hydrangea macrophylla HOM05D005691 ORTHO05D007096 0.0e+00 1192.9 900 66.4
SEGI_38606 Sequoiadendron giganteum HOM05D005691 ORTHO05D007096 0.0e+00 1182.2 1342 48.1
Solyc07g047860.4 Solanum lycopersicum HOM05D005691 ORTHO05D007096 0.0e+00 1133.6 861 66.7
SHI10144 Sapria himalayana HOM05D005691 ORTHO05D007096 0.0e+00 1129.0 1243 50.5
BcaC06g35896 Brassica carinata HOM05D005691 ORTHO05D007096 4.4e-285 985.3 1297 46.0
Mapoly0061s0124 Marchantia polymorpha HOM05D005691 ORTHO05D007096 2.3e-278 963.0 1343 41.9
SMO351G0158 Selaginella moellendorffii HOM05D005691 ORTHO05D007096 1.9e-251 873.6 1295 40.0
unitig_746.g26642 Utricularia gibba HOM05D005691 ORTHO05D007096 2.5e-235 820.1 1320 39.4
Pp3c21_14430 Physcomitrium patens HOM05D005691 ORTHO05D007096 2.8e-231 806.6 1321 38.0
AagrBONN_evm.TU.Sc2ySwM_362.2878 Anthoceros agrestis HOM05D005691 ORTHO05D007096 8.2e-231 805.1 1129 41.3
CDE04G3337 Ceratophyllum demersum HOM05D005691 ORTHO05D007096 2.5e-219 766.9 950 46.1
COL.COLO4_09229 Corchorus olitorius HOM05D005691 ORTHO05D007096 2.8e-178 630.6 482 63.9
COL.COLO4_09230 Corchorus olitorius HOM05D005691 ORTHO05D007096 3.5e-165 587.0 579 57.2
HPP92_000880 Vanilla planifolia HOM05D005691 ORTHO05D007096 3.4e-160 570.5 573 51.8
CBR_g39814 Chara braunii HOM05D005691 ORTHO05D007096 2.7e-125 454.5 1145 29.3
Cpa.g.sc211.12 Carica papaya HOM05D005691 ORTHO05D007096 7.7e-112 409.8 291 67.4
Cpa.g.sc211.9 Carica papaya HOM05D005691 ORTHO05D007096 6.1e-109 400.2 324 63.0
CDE04G1592 Ceratophyllum demersum HOM05D005691 ORTHO05D007096 1.7e-98 365.5 322 55.3
HPP92_000881 Vanilla planifolia HOM05D005691 ORTHO05D007096 2.2e-95 355.1 363 54.0
SMO351G0109 Selaginella moellendorffii HOM05D005691 ORTHO05D007096 4.2e-94 350.9 1084 29.0
C07p09910 Brassica napus HOM05D005691 ORTHO05D007096 6.6e-79 300.4 259 62.2
C07p09950 Brassica napus HOM05D005691 ORTHO05D007096 1.4e-65 256.1 310 46.8
Hma1.2p1_1825F.1_g304370 Hydrangea macrophylla HOM05D005691 ORTHO05D007096 1.3e-63 249.6 205 62.4
TAR626G0169 Trochodendron aralioides HOM05D005691 ORTHO05D007096 1.6e-56 226.1 234 53.4
Hma1.2p1_0133F.1_g061390 Hydrangea macrophylla HOM05D005691 ORTHO05D007096 1.0e-55 223.4 185 60.5
BolC7t41441H Brassica oleracea HOM05D005691 ORTHO05D007096 2.3e-55 222.2 301 44.5
Hma1.2p1_1825F.1_g304360 Hydrangea macrophylla HOM05D005691 ORTHO05D007096 1.7e-47 196.1 151 64.2
C07p09940 Brassica napus HOM05D005691 ORTHO05D007096 5.1e-39 167.9 119 68.9
PGR042G0477 Punica granatum HOM05D005691 ORTHO05D007096 4.9e-34 151.4 128 64.1
MCO12G144 Micromonas commoda HOM05D005691 ORTHO05D007096 1.4e-28 133.3 661 24.5
PGR042G0061 Punica granatum HOM05D005691 ORTHO05D007096 4.5e-27 128.3 123 52.0
CSS0045948 Camellia sinensis var. sinensis HOM05D005691 ORTHO05D007096 5.5e-17 94.7 162 41.4
SalBow7G3724 Salvia bowleyana HOM05D005691 ORTHO05D007096 2.7e-16 92.4 89 46.1
SHI10145 Sapria himalayana HOM05D005691 ORTHO05D007096 9.6e-14 84.0 104 51.9
Hma1.2p1_0133F.1_g061360 Hydrangea macrophylla HOM05D005691 ORTHO05D007096 1.6e-08 66.6 66 59.1
SEGI_34592 Sequoiadendron giganteum HOM05D005691 ORTHO05D007096 5.7e-06 58.2 47 59.6
BolC7t41437H Brassica oleracea HOM05D005691 ORTHO05D027513 7.4e-06 57.8 131 32.8


User provided reference genes

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