Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN09G1375 Fragaria x ananassa HOM05D004877 ORTHO05D005942 2.0e-189 665.6 333 100.0
FAN14G1716 Fragaria x ananassa HOM05D004877 ORTHO05D005942 1.3e-185 652.9 333 98.5
FvH4_6g32170 Fragaria vesca HOM05D004877 ORTHO05D005942 6.6e-185 650.6 333 98.2
FAN05G1125 Fragaria x ananassa HOM05D004877 ORTHO05D005942 1.5e-184 649.4 333 98.2
FAN02G1875 Fragaria x ananassa HOM05D004877 ORTHO05D005942 1.6e-178 629.4 333 96.1
RcHm_v2.0_Chr2g0140061 Rosa chinensis HOM05D004877 ORTHO05D005942 5.0e-177 624.4 333 94.3
Prupe.3G061200 Prunus persica HOM05D004877 ORTHO05D005942 9.6e-152 540.4 333 82.0
MD09G1205800 Malus domestica HOM05D004877 ORTHO05D005942 1.1e-147 526.9 333 81.4
MD17G1186700 Malus domestica HOM05D004877 ORTHO05D005942 5.4e-147 524.6 333 80.2
CANSAT01G3179 Cannabis sativa HOM05D004877 ORTHO05D005942 1.5e-141 506.5 333 77.5
QL05p020530 Quercus lobata HOM05D004877 ORTHO05D005942 1.4e-139 500.0 332 75.3
Atru.chr1.3498 Acer truncatum HOM05D004877 ORTHO05D005942 3.3e-136 488.8 335 74.6
Eucgr.J02948 Eucalyptus grandis HOM05D004877 ORTHO05D005942 3.3e-136 488.8 333 73.6
CiPaw.01G232800 Carya illinoinensis HOM05D004877 ORTHO05D005942 5.6e-136 488.0 334 74.6
Thecc.06G097500 Theobroma cacao HOM05D004877 ORTHO05D005942 4.0e-134 481.9 332 74.1
Manes.04G132600 Manihot esculenta HOM05D004877 ORTHO05D005942 9.0e-134 480.7 335 74.9
TWI18G0989 Tripterygium wilfordii HOM05D004877 ORTHO05D005942 9.0e-134 480.7 334 72.8
VMungo1080G0916 Vigna mungo HOM05D004877 ORTHO05D005942 4.5e-133 478.4 335 73.4
Gohir.A02G118600 Gossypium hirsutum HOM05D004877 ORTHO05D005942 1.7e-132 476.5 333 74.5
Gorai.003G063100 Gossypium raimondii HOM05D004877 ORTHO05D005942 2.2e-132 476.1 333 74.5
Duzib235G0210 Durio zibethinus HOM05D004877 ORTHO05D005942 2.9e-132 475.7 332 73.5
Manes.11G035000 Manihot esculenta HOM05D004877 ORTHO05D005942 1.1e-131 473.8 335 73.7
ClCG09G000060 Citrullus lanatus HOM05D004877 ORTHO05D005942 1.9e-131 473.0 336 73.2
PGR102G2474 Punica granatum HOM05D004877 ORTHO05D005942 1.9e-131 473.0 337 73.0
Glyma.15G018900 Glycine max HOM05D004877 ORTHO05D005942 2.5e-131 472.6 335 72.5
Ciclev10026016m.g Citrus clementina HOM05D004877 ORTHO05D005942 9.3e-131 470.7 341 73.9
Gohir.D03G059200 Gossypium hirsutum HOM05D004877 ORTHO05D005942 9.3e-131 470.7 334 73.7
GSVIVG01017013001 Vitis vinifera HOM05D004877 ORTHO05D005942 1.2e-130 470.3 333 72.7
CiPaw.02G146900 Carya illinoinensis HOM05D004877 ORTHO05D005942 1.6e-130 469.9 334 73.7
Lalb_Chr24g0396111 Lupinus albus HOM05D004877 ORTHO05D005942 1.6e-130 469.9 335 74.0
Lj3g0003786 Lotus japonicus HOM05D004877 ORTHO05D005942 2.1e-130 469.5 335 72.8
arahy.Tifrunner.gnm1.ann1.4Y1F7A Arachis hypogaea HOM05D004877 ORTHO05D005942 4.6e-130 468.4 335 71.9
Duzib192G0168 Durio zibethinus HOM05D004877 ORTHO05D005942 6.0e-130 468.0 332 72.3
Glyma.13G355300 Glycine max HOM05D004877 ORTHO05D005942 1.3e-129 466.8 335 71.9
TPR.G37257 Trifolium pratense HOM05D004877 ORTHO05D005942 2.3e-129 466.1 335 71.0
arahy.Tifrunner.gnm1.ann1.64XDM2 Arachis hypogaea HOM05D004877 ORTHO05D005942 8.7e-129 464.2 335 71.3
Phvul.005G167000 Phaseolus vulgaris HOM05D004877 ORTHO05D005942 8.7e-129 464.2 335 72.5
Potri.001G188300 Populus trichocarpa HOM05D004877 ORTHO05D005942 2.5e-128 462.6 325 73.5
Medtr2g101270 Medicago truncatula HOM05D004877 ORTHO05D005942 5.6e-128 461.5 334 71.0
Dinv37993 Davidia involucrata HOM05D004877 ORTHO05D005942 9.6e-128 460.7 339 71.1
CsaV3_7G035410 Cucumis sativus L. HOM05D004877 ORTHO05D005942 4.8e-127 458.4 336 71.4
Ca_01157_v3 Cicer arietinum L. HOM05D004877 ORTHO05D005942 6.2e-127 458.0 335 70.4
MELO3C024450.2 Cucumis melo HOM05D004877 ORTHO05D005942 1.4e-126 456.8 336 70.5
SalBow1G2757 Salvia bowleyana HOM05D004877 ORTHO05D005942 3.1e-126 455.7 341 69.5
SalBow2G1418 Salvia bowleyana HOM05D004877 ORTHO05D005942 3.1e-126 455.7 341 69.5
Sed0013882 Sechium edule HOM05D004877 ORTHO05D005942 3.1e-126 455.7 333 71.5
Cc04_g02700 Coffea canephora HOM05D004877 ORTHO05D005942 6.9e-126 454.5 341 70.4
Sp3g14680 Schrenkiella parvula HOM05D004877 ORTHO05D005942 6.9e-126 454.5 336 69.3
Gohir.D03G059150 Gossypium hirsutum HOM05D004877 ORTHO05D005942 9.0e-126 454.1 321 74.1
Lalb_Chr14g0373091 Lupinus albus HOM05D004877 ORTHO05D005942 9.0e-126 454.1 335 70.7
Sabra01G0152700 Salix brachista HOM05D004877 ORTHO05D005942 1.5e-125 453.4 335 70.1
Psat5g297080 Pisum sativum HOM05D004877 ORTHO05D005942 2.6e-125 452.6 335 69.3
AUR62022182 Chenopodium quinoa HOM05D004877 ORTHO05D005942 3.4e-125 452.2 333 69.7
Hund06654 Selenicereus undatus HOM05D004877 ORTHO05D005942 4.5e-125 451.8 333 70.0
COL.COLO4_30486 Corchorus olitorius HOM05D004877 ORTHO05D005942 5.8e-125 451.4 333 71.5
Ah.01g005680 Amaranthus hybridus HOM05D004877 ORTHO05D005942 1.0e-124 450.7 333 69.7
AUR62031885 Chenopodium quinoa HOM05D004877 ORTHO05D005942 1.0e-124 450.7 335 69.6
CSS0014120 Camellia sinensis var. sinensis HOM05D004877 ORTHO05D005942 1.3e-124 450.3 336 69.9
Lj9A511G47 Lonicera japonica HOM05D004877 ORTHO05D005942 6.5e-124 448.0 343 70.3
Thhalv10021095m.g Eutrema salsugineum HOM05D004877 ORTHO05D005942 1.1e-123 447.2 338 68.0
Sc10g0007170 Simmondsia chinensis HOM05D004877 ORTHO05D005942 4.2e-123 445.3 339 69.3
Gorai.011G072600 Gossypium raimondii HOM05D004877 ORTHO05D005942 7.1e-123 444.5 331 68.9
Dinv30451 Davidia involucrata HOM05D004877 ORTHO05D005942 1.2e-122 443.7 340 69.4
Actinidia32706 Actinidia chinensis HOM05D004877 ORTHO05D005942 6.0e-122 441.4 340 69.1
THA.LOC104817965 Tarenaya hassleriana HOM05D004877 ORTHO05D005942 7.9e-122 441.0 336 68.8
Sc10g0007240 Simmondsia chinensis HOM05D004877 ORTHO05D005942 1.8e-121 439.9 338 68.3
AT3G16310 Arabidopsis thaliana HOM05D004877 ORTHO05D005942 5.1e-121 438.3 336 68.5
Gohir.A10G066900 Gossypium hirsutum HOM05D004877 ORTHO05D005942 1.1e-120 437.2 331 68.3
BcaC05g28894 Brassica carinata HOM05D004877 ORTHO05D005942 3.3e-120 435.6 336 68.5
TAR636G0039 Trochodendron aralioides HOM05D004877 ORTHO05D005942 5.7e-120 434.9 333 66.1
AL3G29060 Arabidopsis lyrata HOM05D004877 ORTHO05D005942 1.6e-119 433.3 336 67.9
BraA05t22146Z Brassica rapa HOM05D004877 ORTHO05D005942 1.6e-119 433.3 333 68.2
Hund00671 Selenicereus undatus HOM05D004877 ORTHO05D005942 2.2e-119 433.0 334 66.8
EL10Ac9g22101 Beta vulgaris HOM05D004877 ORTHO05D005942 1.8e-118 429.9 379 61.2
C05p50190 Brassica napus HOM05D004877 ORTHO05D005942 2.0e-117 426.4 330 67.6
BolC5t33769H Brassica oleracea HOM05D004877 ORTHO05D005942 2.0e-117 426.4 330 67.6
Aa31LG8G3450 Aethionema arabicum HOM05D004877 ORTHO05D005942 5.9e-117 424.9 332 65.7
Carub.0003s1606 Capsella rubella HOM05D004877 ORTHO05D005942 5.9e-117 424.9 337 66.5
CARHR091520 Cardamine hirsuta HOM05D004877 ORTHO05D005942 2.9e-116 422.5 326 68.1
Peaxi162Scf00038g00844 Petunia axillaris HOM05D004877 ORTHO05D005942 8.5e-116 421.0 343 65.6
Gohir.D10G068000 Gossypium hirsutum HOM05D004877 ORTHO05D005942 1.9e-115 419.9 331 66.8
Nitab4.5_0003167g0040 Nicotiana tabacum HOM05D004877 ORTHO05D005942 3.2e-115 419.1 338 66.3
TAR624G0319 Trochodendron aralioides HOM05D004877 ORTHO05D005942 3.2e-115 419.1 333 66.4
BcaB06g25724 Brassica carinata HOM05D004877 ORTHO05D005942 2.1e-114 416.4 339 66.4
Nitab4.5_0001755g0090 Nicotiana tabacum HOM05D004877 ORTHO05D005942 2.1e-114 416.4 338 65.7
CAN.G438.5 Capsicum annuum HOM05D004877 ORTHO05D005942 1.4e-113 413.7 339 64.6
SGA_v2.0_scaffold69G23330 Striga asiatica HOM05D004877 ORTHO05D005942 1.8e-113 413.3 340 64.7
PGSC0003DMG400002534 Solanum tuberosum HOM05D004877 ORTHO05D005942 3.0e-113 412.5 338 64.2
Oeu001891.1 Olea europaea HOM05D004877 ORTHO05D005942 6.7e-113 411.4 336 65.8
Sopen03g039700 Solanum pennellii HOM05D004877 ORTHO05D005942 1.5e-112 410.2 340 64.4
DCAR_016196 Daucus carota HOM05D004877 ORTHO05D005942 4.3e-112 408.7 342 65.5
Solyc03g120880.4 Solanum lycopersicum HOM05D004877 ORTHO05D005942 9.7e-112 407.5 338 63.9
MBI01_g42890_MAGBIO Magnolia biondii HOM05D004877 ORTHO05D005942 1.7e-111 406.8 339 64.0
CSS0036359 Camellia sinensis var. sinensis HOM05D004877 ORTHO05D005942 1.1e-110 404.1 342 64.6
Nn8g39120 Nelumbo nucifera HOM05D004877 ORTHO05D005942 1.8e-110 403.3 355 61.1
Rhsim08G0226300 Rhododendron simsii HOM05D004877 ORTHO05D005942 1.8e-110 403.3 348 64.7
MSTRG.22647 Avicennia marina HOM05D004877 ORTHO05D005942 2.4e-110 402.9 341 63.0
MSTRG.11036 Avicennia marina HOM05D004877 ORTHO05D005942 1.5e-109 400.2 341 65.1
Lj9A524G48 Lonicera japonica HOM05D004877 ORTHO05D005942 1.4e-107 393.7 359 63.0
arahy.Tifrunner.gnm1.ann1.NE95XN Arachis hypogaea HOM05D004877 ORTHO05D005942 1.2e-106 390.6 356 59.6
arahy.Tifrunner.gnm1.ann1.WG6QSW Arachis hypogaea HOM05D004877 ORTHO05D005942 1.2e-106 390.6 356 59.6
Aqoxy7G01469 Aquilegia oxysepala HOM05D004877 ORTHO05D005942 3.0e-105 386.0 335 60.9
Sed0014944 Sechium edule HOM05D004877 ORTHO05D005942 6.7e-105 384.8 334 62.6
Lsat_1_v5_gn_4_99980 Lactuca sativa HOM05D004877 ORTHO05D005942 3.3e-104 382.5 360 59.4
Cpa.g.c40702 Carica papaya HOM05D004877 ORTHO05D005942 3.6e-98 362.5 262 72.1
vmacro18867 Vaccinium macrocarpon HOM05D004877 ORTHO05D005942 5.2e-97 358.6 284 67.6
CDE05G3078 Ceratophyllum demersum HOM05D004877 ORTHO05D005942 6.7e-97 358.2 337 58.8
PSO832G2273 Papaver somniferum HOM05D004877 ORTHO05D005942 1.1e-96 357.5 353 55.2
PSO173G0077 Papaver somniferum HOM05D004877 ORTHO05D005942 1.5e-96 357.1 353 55.8
unitig_46.g18560 Utricularia gibba HOM05D004877 ORTHO05D005942 9.7e-96 354.4 344 57.0
HanXRQChr09g0275881 Helianthus annuus HOM05D004877 ORTHO05D005942 8.2e-95 351.3 361 57.3
unitig_37.g12259 Utricularia gibba HOM05D004877 ORTHO05D005942 1.3e-92 344.0 331 57.4
CDE05G1429 Ceratophyllum demersum HOM05D004877 ORTHO05D005942 4.2e-91 339.0 337 55.8
ATR0705G205 Amborella trichopoda HOM05D004877 ORTHO05D005942 1.6e-90 337.0 360 53.1
Haze_15830 Corylus avellana HOM05D002410 ORTHO05D002805 5.2e-89 332.0 324 58.3
ECA232G1650 Erigeron canadensis HOM05D004877 ORTHO05D005942 2.7e-85 319.7 330 57.3
TAR624G1397 Trochodendron aralioides HOM05D004877 ORTHO05D005942 4.5e-77 292.4 229 65.9
Actinidia39142 Actinidia chinensis HOM05D004877 ORTHO05D005942 1.6e-74 283.9 246 62.2
Peaxi162Scf00894g00009 Petunia axillaris HOM05D004877 ORTHO05D005942 2.8e-71 273.1 209 67.9
Haze_15829 Corylus avellana HOM05D004877 ORTHO05D005942 8.3e-71 271.6 256 58.2
HanXRQChr16g0501211 Helianthus annuus HOM05D004877 ORTHO05D005942 3.5e-69 266.2 355 47.3
Migut.I00909 Erythranthe guttata HOM05D004877 ORTHO05D005942 8.6e-68 261.5 268 58.6
arahy.Tifrunner.gnm1.ann1.XV48AZ Arachis hypogaea HOM05D004877 ORTHO05D005942 1.6e-61 240.7 189 66.1
Peaxi162Scf11517g00001 Petunia axillaris HOM05D004877 ORTHO05D005942 6.6e-60 235.3 188 65.4
SEGI_39894 Sequoiadendron giganteum HOM05D004877 ORTHO05D005942 1.7e-55 220.7 381 41.2
Mapoly0014s0033 Marchantia polymorpha HOM05D004877 ORTHO05D005942 7.1e-54 215.3 358 42.2
Pp3c6_16260 Physcomitrium patens HOM05D004877 ORTHO05D005942 2.1e-53 213.8 359 41.2
Pp3c5_15240 Physcomitrium patens HOM05D004877 ORTHO05D005942 1.1e-51 208.0 360 41.1
Os01g0200500 Oryza sativa ssp. japonica HOM05D004877 ORTHO05D005942 8.1e-50 201.8 216 55.6
Zm00001eb337990 Zea mays HOM05D004877 ORTHO05D005942 8.9e-49 198.4 359 40.9
HPP92_002859 Vanilla planifolia HOM05D004877 ORTHO05D005942 1.3e-44 184.5 226 49.1
SMO144G0168 Selaginella moellendorffii HOM05D004877 ORTHO05D005942 3.0e-44 183.3 175 53.7
Zm00001eb293750 Zea mays HOM05D004877 ORTHO05D005942 2.1e-42 177.2 364 35.4
Os05g0520100 Oryza sativa ssp. japonica HOM05D004877 ORTHO05D005942 1.1e-33 148.3 361 34.6
AagrBONN_evm.TU.Sc2ySwM_117.2493 Anthoceros agrestis HOM05D004877 ORTHO05D005942 1.7e-31 141.0 335 35.2
Nn2g11613 Nelumbo nucifera HOM05D004877 ORTHO05D005942 1.5e-27 127.9 117 60.7
PSO824G0035 Papaver somniferum HOM05D004877 ORTHO05D007188 6.2e-26 122.5 92 60.9
Zm00001eb353450 Zea mays HOM05D004877 ORTHO05D005942 5.3e-25 119.4 348 30.5
PSO173G0103 Papaver somniferum HOM05D005944 ORTHO05D007188 2.0e-24 117.5 92 58.7
PSO675G8939 Papaver somniferum HOM05D004877 ORTHO05D005942 4.9e-23 112.8 138 45.7
SEGI_33810 Sequoiadendron giganteum HOM05D004877 ORTHO05D000002 1.1e-22 111.7 133 44.4
PSO824G0019 Papaver somniferum HOM05D005944 ORTHO05D007188 4.2e-22 109.8 83 63.9
CBR_g44943 Chara braunii HOM05D004877 ORTHO05D005942 7.1e-22 109.0 145 45.5
MD16G1217600 Malus domestica HOM05D004877 ORTHO05D005942 9.3e-22 108.6 74 70.3
PSO832G4257 Papaver somniferum HOM05D005944 ORTHO05D007188 1.2e-21 108.2 112 46.4
MD07G1258000 Malus domestica HOM05D004877 ORTHO05D005942 6.7e-20 102.4 56 89.3
Nn5g29960 Nelumbo nucifera HOM05D004877 ORTHO05D005942 5.6e-19 99.4 98 56.1
TAR629G0138 Trochodendron aralioides HOM05D004753 ORTHO05D005920 5.3e-17 92.8 81 59.3
Cre12.g553050 Chlamydomonas reinhardtii HOM05D004877 ORTHO05D005942 2.2e-15 87.4 78 51.3
TAR624G1091 Trochodendron aralioides HOM05D004877 ORTHO05D005942 6.5e-15 85.9 60 71.7
PRCOL_00002288 Prasinoderma coloniale HOM05D004877 ORTHO05D005942 6.0e-13 79.3 341 27.0
Pp3c1_40780 Physcomitrium patens HOM05D004877 ORTHO05D005942 1.0e-12 78.6 161 32.3
Cpa.g.c43067 Carica papaya HOM05D004877 ORTHO05D005942 4.1e-09 66.6 42 78.6
PSO832G3272 Papaver somniferum HOM05D005944 ORTHO05D007188 1.3e-07 61.6 43 62.8
PSO173G0086 Papaver somniferum HOM05D005944 ORTHO05D007188 1.7e-07 61.2 53 49.1


User provided reference genes

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