Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN08G3375 Fragaria x ananassa HOM05D005544 ORTHO05D007303 1.5e-274 949.1 546 100.0
FAN18G1194 Fragaria x ananassa HOM05D005544 ORTHO05D007303 5.4e-269 930.6 547 98.4
FvH4_5g25500 Fragaria vesca HOM05D005544 ORTHO05D007303 7.0e-269 930.2 547 98.4
FAN13G2222 Fragaria x ananassa HOM05D005544 ORTHO05D007303 3.5e-268 927.9 546 98.4
RcHm_v2.0_Chr7g0215731 Rosa chinensis HOM05D005544 ORTHO05D007303 1.6e-252 875.9 546 93.4
Prupe.1G201800 Prunus persica HOM05D005544 ORTHO05D007303 2.5e-218 762.3 554 82.5
MD03G1274200 Malus domestica HOM05D005544 ORTHO05D007303 4.8e-217 758.1 552 76.3
MD11G1296600 Malus domestica HOM05D005544 ORTHO05D007303 1.3e-214 750.0 552 75.7
Potri.014G135600 Populus trichocarpa HOM05D005544 ORTHO05D007303 5.0e-190 668.3 544 70.0
TWI59G1451 Tripterygium wilfordii HOM05D005544 ORTHO05D007303 6.5e-190 667.9 547 67.5
Thecc.01G288500 Theobroma cacao HOM05D005544 ORTHO05D007303 1.9e-189 666.4 545 67.3
Cpa.g.sc9.148 Carica papaya HOM05D005544 ORTHO05D007303 1.6e-188 663.3 545 66.6
Duzib211G0556 Durio zibethinus HOM05D005544 ORTHO05D007303 1.6e-188 663.3 547 66.5
Ciclev10019671m.g Citrus clementina HOM05D005544 ORTHO05D007303 2.1e-188 662.9 541 68.4
COL.COLO4_08045 Corchorus olitorius HOM05D005544 ORTHO05D007303 4.7e-188 661.8 547 66.4
Potri.002G213500 Populus trichocarpa HOM05D005544 ORTHO05D007303 4.4e-186 655.2 544 66.9
QL02p074655 Quercus lobata HOM05D005544 ORTHO05D007303 3.1e-184 649.0 546 72.9
QL12p023649 Quercus lobata HOM05D005544 ORTHO05D007303 1.2e-183 647.1 546 72.2
QL05p077001 Quercus lobata HOM05D005544 ORTHO05D007303 1.6e-183 646.7 546 72.2
Manes.02G181800 Manihot esculenta HOM05D005544 ORTHO05D007303 2.0e-183 646.4 544 67.1
CANSAT25G0498 Cannabis sativa HOM05D005544 ORTHO05D007303 5.9e-183 644.8 546 72.5
QL12p023600 Quercus lobata HOM05D005544 ORTHO05D007303 1.3e-182 643.7 546 71.8
Sabra14G0102000 Salix brachista HOM05D005544 ORTHO05D007303 1.3e-182 643.7 544 69.3
PGR044G1528 Punica granatum HOM05D005544 ORTHO05D007303 4.2e-181 638.6 545 69.5
PGR088G0006 Punica granatum HOM05D005544 ORTHO05D007303 4.2e-181 638.6 545 69.5
CiPaw.07G098400 Carya illinoinensis HOM05D005544 ORTHO05D007303 1.6e-180 636.7 547 71.3
Sed0004995 Sechium edule HOM05D005544 ORTHO05D007303 1.6e-180 636.7 548 71.2
CsaV3_7G028370 Cucumis sativus L. HOM05D005544 ORTHO05D007303 1.0e-179 634.0 548 71.5
Haze_10363 Corylus avellana HOM05D005544 ORTHO05D007303 1.4e-179 633.6 548 71.2
Cfa004766 Carpinus fangiana HOM05D005544 ORTHO05D007303 2.3e-179 632.9 548 71.2
MELO3C015885.2 Cucumis melo HOM05D005544 ORTHO05D007303 4.0e-179 632.1 548 70.8
VMungo0720G2755 Vigna mungo HOM05D005544 ORTHO05D007303 1.5e-178 630.2 544 62.3
Lalb_Chr02g0143021 Lupinus albus HOM05D005544 ORTHO05D007303 2.6e-178 629.4 547 70.6
Lj5g0002288 Lotus japonicus HOM05D005544 ORTHO05D007303 5.7e-178 628.2 541 63.4
CSS0033644 Camellia sinensis var. sinensis HOM05D005544 ORTHO05D007303 9.8e-178 627.5 544 62.3
Gohir.D08G054000 Gossypium hirsutum HOM05D005544 ORTHO05D007303 1.4e-176 623.6 535 65.0
Gorai.004G054300 Gossypium raimondii HOM05D005544 ORTHO05D007303 1.4e-176 623.6 535 65.0
Atru.chr5.1295 Acer truncatum HOM05D005544 ORTHO05D007303 3.1e-176 622.5 543 72.0
Gohir.A08G044300 Gossypium hirsutum HOM05D005544 ORTHO05D007303 3.5e-175 619.0 533 64.5
Phvul.007G167300 Phaseolus vulgaris HOM05D005544 ORTHO05D007303 6.5e-174 614.8 548 61.3
Ca_10382_v3 Cicer arietinum L. HOM05D005544 ORTHO05D007303 9.5e-173 610.9 539 61.4
Ca_29660_v3 Cicer arietinum L. HOM05D005544 ORTHO05D007303 9.5e-173 610.9 539 61.4
Rhsim13G0018400 Rhododendron simsii HOM05D005544 ORTHO05D007303 1.4e-171 607.1 548 62.2
Medtr1g089260 Medicago truncatula HOM05D005544 ORTHO05D007303 2.0e-170 603.2 547 60.9
vmacro02516 Vaccinium macrocarpon HOM05D005544 ORTHO05D007303 2.6e-170 602.8 552 60.5
Dinv11286 Davidia involucrata HOM05D005544 ORTHO05D007303 9.8e-170 600.9 541 63.8
Glyma.02G151500 Glycine max HOM05D005544 ORTHO05D007303 2.2e-169 599.7 547 63.3
PGSC0003DMG400043560 Solanum tuberosum HOM05D005544 ORTHO05D007303 3.1e-168 595.9 553 68.0
QL12p023632 Quercus lobata HOM05D005544 ORTHO05D007303 7.0e-168 594.7 556 60.4
Cc01_g20090 Coffea canephora HOM05D005544 ORTHO05D007303 9.2e-168 594.3 544 66.4
Nitab4.5_0001651g0120 Nicotiana tabacum HOM05D005544 ORTHO05D007303 1.2e-167 594.0 552 61.8
Nitab4.5_0009496g0010 Nicotiana tabacum HOM05D005544 ORTHO05D007303 2.7e-167 592.8 552 62.0
THA.LOC104802213 Tarenaya hassleriana HOM05D005544 ORTHO05D007303 2.5e-165 586.3 546 58.2
Lsat_1_v5_gn_5_189761 Lactuca sativa HOM05D005544 ORTHO05D007303 7.3e-165 584.7 541 58.4
Nitab4.5_0015534g0010 Nicotiana tabacum HOM05D005544 ORTHO05D007303 1.6e-164 583.6 552 61.6
Sopen05g006280 Solanum pennellii HOM05D005544 ORTHO05D007303 3.6e-164 582.4 553 58.0
Aa31LG1G29410 Aethionema arabicum HOM05D005544 ORTHO05D007303 5.2e-163 578.6 545 58.0
TAR362G0205 Trochodendron aralioides HOM05D005544 ORTHO05D007303 5.7e-162 575.1 539 66.0
Lj1C40T13 Lonicera japonica HOM05D005544 ORTHO05D007303 9.8e-162 574.3 545 59.1
Thhalv10001392m.g Eutrema salsugineum HOM05D005544 ORTHO05D007303 3.7e-161 572.4 542 57.6
Glyma.10G022600 Glycine max HOM05D005544 ORTHO05D007303 3.7e-161 572.4 536 67.4
DCAR_018371 Daucus carota HOM05D005544 ORTHO05D007303 1.2e-159 567.4 549 65.8
Actinidia00706 Actinidia chinensis HOM05D005544 ORTHO05D007303 4.6e-159 565.5 541 58.4
Sp4g29910 Schrenkiella parvula HOM05D005544 ORTHO05D007303 7.8e-159 564.7 542 56.8
CAN.G184.38 Capsicum annuum HOM05D005544 ORTHO05D007303 2.1e-156 556.6 552 64.7
Hma1.2p1_0358F.1_g134770 Hydrangea macrophylla HOM05D005544 ORTHO05D007303 2.1e-156 556.6 511 67.3
Oeu047906.1 Olea europaea HOM05D005544 ORTHO05D007303 3.6e-156 555.8 549 55.4
Carub.0004s3071 Capsella rubella HOM05D005544 ORTHO05D007303 4.7e-156 555.4 543 56.0
HanXRQChr11g0334851 Helianthus annuus HOM05D005544 ORTHO05D007303 4.7e-156 555.4 541 55.1
Solyc05g010470.4 Solanum lycopersicum HOM05D005544 ORTHO05D007303 4.7e-156 555.4 500 58.8
AUR62042230 Chenopodium quinoa HOM05D005544 ORTHO05D007303 1.8e-155 553.5 550 64.5
ECA248G0063 Erigeron canadensis HOM05D005544 ORTHO05D007303 5.2e-155 552.0 545 58.5
AUR62037787 Chenopodium quinoa HOM05D005544 ORTHO05D007303 8.9e-155 551.2 550 63.6
Nn4g24755 Nelumbo nucifera HOM05D005544 ORTHO05D007303 2.0e-154 550.1 547 64.0
AL4G47580 Arabidopsis lyrata HOM05D005544 ORTHO05D007303 4.4e-154 548.9 543 55.2
Ah.09g228790 Amaranthus hybridus HOM05D005544 ORTHO05D007303 5.8e-154 548.5 545 62.2
CARHR143370 Cardamine hirsuta HOM05D005544 ORTHO05D007303 7.5e-154 548.1 545 55.2
Nn3g18705 Nelumbo nucifera HOM05D005544 ORTHO05D007303 2.2e-153 546.6 547 63.6
AT2G47990 Arabidopsis thaliana HOM05D005544 ORTHO05D007303 2.9e-153 546.2 540 58.1
BolC3t12848H Brassica oleracea HOM05D005544 ORTHO05D007303 5.6e-149 531.9 542 54.1
BcaB02g08729 Brassica carinata HOM05D005544 ORTHO05D007303 1.6e-148 530.4 540 62.4
C03p02930 Brassica napus HOM05D005544 ORTHO05D007303 3.6e-148 529.3 542 53.7
SGA_v2.0_scaffold172G39056 Striga asiatica HOM05D005544 ORTHO05D007303 3.6e-148 529.3 548 52.7
Sc17g0005190 Simmondsia chinensis HOM05D005544 ORTHO05D007303 8.1e-148 528.1 549 62.1
BcaB01g05978 Brassica carinata HOM05D005544 ORTHO05D007303 2.6e-146 523.1 540 53.3
A03p02590 Brassica napus HOM05D005544 ORTHO05D007303 8.3e-145 518.1 541 53.4
BraA03t09620Z Brassica rapa HOM05D005544 ORTHO05D007303 1.4e-144 517.3 542 53.3
Migut.N02122 Erythranthe guttata HOM05D005544 ORTHO05D007303 3.2e-144 516.2 552 53.3
Hma1.2p1_0358F.1_g134780 Hydrangea macrophylla HOM05D005544 ORTHO05D007303 2.1e-143 513.5 540 62.2
Migut.O00595 Erythranthe guttata HOM05D005544 ORTHO05D007303 1.0e-142 511.1 552 52.2
PSO675G2029 Papaver somniferum HOM05D005544 ORTHO05D007303 6.6e-142 508.4 541 60.8
PSO541G2439 Papaver somniferum HOM05D005544 ORTHO05D007303 1.9e-141 506.9 541 60.8
Psat6g168560 Pisum sativum HOM05D005544 ORTHO05D007303 3.3e-141 506.1 550 61.6
Actinidia24289 Actinidia chinensis HOM05D005544 ORTHO05D007303 8.9e-139 498.0 541 53.2
SalBow2G1504 Salvia bowleyana HOM05D005544 ORTHO05D007303 8.9e-139 498.0 553 50.6
EL10Ac2g03124 Beta vulgaris HOM05D005544 ORTHO05D007303 2.4e-136 490.0 520 60.2
unitig_22.g6695 Utricularia gibba HOM05D005544 ORTHO05D007303 3.5e-135 486.1 555 48.1
Aqoxy2G03155 Aquilegia oxysepala HOM05D005544 ORTHO05D007303 3.0e-134 483.0 547 58.0
GSVIVG01011022001 Vitis vinifera HOM05D005544 ORTHO05D007303 2.4e-131 473.4 548 60.2
Peaxi162Scf00017g00211 Petunia axillaris HOM05D005544 ORTHO05D007303 4.6e-127 459.1 554 50.7
SHI20711 Sapria himalayana HOM05D005544 ORTHO05D007303 1.4e-123 447.6 533 50.1
MBI11_g11983_MAGBIO Magnolia biondii HOM05D005544 ORTHO05D007303 2.0e-122 443.7 541 48.4
QL12p023536 Quercus lobata HOM05D005544 ORTHO05D007303 3.4e-122 443.0 339 67.6
CDE07G0705 Ceratophyllum demersum HOM05D005544 ORTHO05D007303 6.9e-115 418.7 539 45.5
ATR0691G265 Amborella trichopoda HOM05D005544 ORTHO05D007303 6.0e-111 405.6 536 45.1
Os07g0224900 Oryza sativa ssp. japonica HOM05D005544 ORTHO05D007303 4.6e-103 379.4 553 42.3
Zm00001eb303580 Zea mays HOM05D005544 ORTHO05D007303 7.6e-98 362.1 556 41.0
Sc17g0005180 Simmondsia chinensis HOM05D005544 ORTHO05D007303 2.5e-93 347.1 400 60.5
TPR.G16943 Trifolium pratense HOM05D005544 ORTHO05D007303 2.4e-91 340.5 546 50.9
Pp3c8_11620 Physcomitrium patens HOM05D005544 ORTHO05D007303 1.5e-77 294.7 535 41.7
Mapoly0066s0060 Marchantia polymorpha HOM05D005544 ORTHO05D007303 4.8e-76 289.7 529 42.3
SMO119G0317 Selaginella moellendorffii HOM05D005544 ORTHO05D007303 2.4e-75 287.3 535 36.6
HPP92_015605 Vanilla planifolia HOM05D005544 ORTHO05D007303 3.1e-75 287.0 292 53.1
Sed0004423 Sechium edule HOM05D005544 ORTHO05D007303 1.9e-72 277.7 425 42.4
Cre03.g196850 Chlamydomonas reinhardtii HOM05D005544 ORTHO05D007303 1.0e-65 255.4 524 34.7
SEGI_38002 Sequoiadendron giganteum HOM05D005544 ORTHO05D007303 1.0e-65 255.4 349 41.0
Hma1.2p1_1992F.1_g310250 Hydrangea macrophylla HOM05D005544 ORTHO05D007303 1.4e-59 235.0 319 45.1
PRCOL_00005139 Prasinoderma coloniale HOM05D005544 ORTHO05D007303 6.8e-46 189.5 529 28.2
COL.COLO4_19838 Corchorus olitorius HOM05D005544 ORTHO05D007303 2.7e-42 177.6 246 46.3
CBR_g11128 Chara braunii HOM05D005544 ORTHO05D007303 1.0e-41 175.6 419 28.4
PGSC0003DMG400036093 Solanum tuberosum HOM05D005544 ORTHO05D007303 6.8e-38 162.9 100 75.0
Hma1.2p1_3416F.1_g335940 Hydrangea macrophylla HOM05D005544 ORTHO05D007303 2.2e-36 157.9 319 36.1
HPP92_015604 Vanilla planifolia HOM05D005544 ORTHO05D007303 5.2e-30 136.7 237 41.8
C04p71990 Brassica napus HOM05D002853 ORTHO05D003030 9.2e-27 125.9 112 54.5
Sc17g0005170 Simmondsia chinensis HOM05D005544 ORTHO05D007303 5.1e-25 120.2 102 62.7
SalBow3G0398 Salvia bowleyana HOM05D005544 ORTHO05D002055 1.5e-24 118.6 179 38.5
Cfa022606 Carpinus fangiana HOM05D005544 ORTHO05D007303 1.2e-23 115.5 566 26.3
BcaC06g36661 Brassica carinata HOM05D005544 ORTHO05D027614 1.1e-22 112.5 119 53.8
SGA_v2.0_scaffold75G25026 Striga asiatica HOM05D005544 ORTHO05D007303 1.0e-17 95.9 143 39.2
BolC7t40575H Brassica oleracea HOM05D005544 ORTHO05D027614 1.5e-16 92.0 157 43.3
A07p00730 Brassica napus HOM05D005544 ORTHO05D027614 6.2e-15 86.7 157 41.4
Nn3g19125 Nelumbo nucifera HOM05D005544 ORTHO05D007303 9.0e-14 82.8 60 63.3
CAN.G708.1 Capsicum annuum HOM05D005544 ORTHO05D027614 2.0e-13 81.6 71 63.4
CAN.G111.2 Capsicum annuum HOM05D000002 ORTHO05D000001 5.8e-13 80.1 90 47.8
SGA_v2.0_scaffold419G51287 Striga asiatica HOM05D005544 ORTHO05D007303 1.9e-11 75.1 96 43.8
SGA_v2.0_scaffold45G17255 Striga asiatica HOM05D005544 ORTHO05D007303 8.7e-09 66.2 95 40.0
SGA_v2.0_scaffold175G39332 Striga asiatica HOM05D005544 ORTHO05D007303 1.9e-08 65.1 95 37.9
SEGI_41146 Sequoiadendron giganteum HOM05D005544 ORTHO05D007303 9.6e-08 62.8 70 44.3


User provided reference genes

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