Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN08G0919 Fragaria x ananassa HOM05D003763 ORTHO05D004315 1.2e-159 566.6 325 100.0
FAN13G2490 Fragaria x ananassa HOM05D003763 ORTHO05D004315 5.3e-155 551.2 325 97.8
FvH4_5g01180 Fragaria vesca HOM05D003763 ORTHO05D004315 9.0e-155 550.4 325 97.5
FAN04G0845 Fragaria x ananassa HOM05D003763 ORTHO05D004315 1.3e-153 546.6 325 97.2
FAN18G3786 Fragaria x ananassa HOM05D003763 ORTHO05D004315 3.8e-153 545.0 326 96.6
RcHm_v2.0_Chr7g0199911 Rosa chinensis HOM05D003763 ORTHO05D004315 2.2e-140 502.7 327 90.5
Prupe.5G086900 Prunus persica HOM05D003763 ORTHO05D004315 1.0e-129 467.2 328 84.1
MD04G1071000 Malus domestica HOM05D003763 ORTHO05D004315 1.1e-125 453.8 332 83.1
COL.COLO4_23800 Corchorus olitorius HOM05D003763 ORTHO05D004315 2.9e-121 439.1 332 81.3
Cpa.g.sc29.40 Carica papaya HOM05D003763 ORTHO05D004315 1.1e-120 437.2 328 79.6
Thecc.03G267900 Theobroma cacao HOM05D003763 ORTHO05D004315 9.4e-120 434.1 327 79.8
CANSAT21G0452 Cannabis sativa HOM05D003763 ORTHO05D004315 2.1e-119 433.0 328 78.7
Lj4g0003870 Lotus japonicus HOM05D003763 ORTHO05D004315 2.1e-119 433.0 328 78.7
Cfa012069 Carpinus fangiana HOM05D003763 ORTHO05D004315 3.6e-119 432.2 328 79.9
TWI60G0957 Tripterygium wilfordii HOM05D003763 ORTHO05D004315 2.3e-118 429.5 332 78.6
Atru.chr9.1500 Acer truncatum HOM05D003763 ORTHO05D004315 1.2e-117 427.2 329 81.5
Gohir.D08G195200 Gossypium hirsutum HOM05D003763 ORTHO05D004315 2.0e-117 426.4 327 81.0
Duzib205G0169 Durio zibethinus HOM05D003763 ORTHO05D004315 2.6e-117 426.0 328 80.2
Manes.01G070000 Manihot esculenta HOM05D003763 ORTHO05D004315 3.7e-116 422.2 331 76.7
arahy.Tifrunner.gnm1.ann1.QN4KPS Arachis hypogaea HOM05D003763 ORTHO05D004315 4.8e-116 421.8 333 75.1
TWI81G0532 Tripterygium wilfordii HOM05D003763 ORTHO05D004315 1.1e-115 420.6 328 78.0
GSVIVG01019890001 Vitis vinifera HOM05D003763 ORTHO05D004315 1.1e-115 420.6 328 76.2
Phvul.003G213900 Phaseolus vulgaris HOM05D003763 ORTHO05D004315 1.4e-115 420.2 330 75.8
Glyma.05G051300 Glycine max HOM05D003763 ORTHO05D004315 3.1e-115 419.1 330 75.5
Lalb_Chr05g0214701 Lupinus albus HOM05D003763 ORTHO05D004315 4.1e-115 418.7 327 76.5
Duzib084G0949 Durio zibethinus HOM05D003763 ORTHO05D004315 5.4e-115 418.3 327 79.2
Gorai.004G206000 Gossypium raimondii HOM05D003763 ORTHO05D004315 9.1e-115 417.5 333 78.1
Glyma.17G133200 Glycine max HOM05D003763 ORTHO05D004315 1.2e-114 417.2 330 74.2
Eucgr.D01944 Eucalyptus grandis HOM05D003763 ORTHO05D004315 1.6e-114 416.8 304 81.6
Ca_20236_v3 Cicer arietinum L. HOM05D003763 ORTHO05D004315 2.0e-114 416.4 329 76.6
Gorai.008G242200 Gossypium raimondii HOM05D003763 ORTHO05D004315 2.7e-114 416.0 327 79.5
Gohir.D12G226200 Gossypium hirsutum HOM05D003763 ORTHO05D004315 1.0e-113 414.1 327 79.2
Sabra03G0083200 Salix brachista HOM05D003763 ORTHO05D004315 2.9e-113 412.5 328 76.5
CiPaw.12G101000 Carya illinoinensis HOM05D003763 ORTHO05D004315 3.8e-113 412.1 331 77.0
Dinv37708 Davidia involucrata HOM05D003763 ORTHO05D004315 3.8e-113 412.1 327 76.5
Potri.003G119200 Populus trichocarpa HOM05D003763 ORTHO05D004315 4.2e-112 408.7 332 76.2
Sp6g05550 Schrenkiella parvula HOM05D003763 ORTHO05D004315 5.5e-112 408.3 328 74.7
VMungo1215G3348 Vigna mungo HOM05D003763 ORTHO05D004315 7.2e-112 407.9 360 69.2
A03p29510 Brassica napus HOM05D003763 ORTHO05D004315 9.4e-112 407.5 328 74.4
BolC3t15881H Brassica oleracea HOM05D003763 ORTHO05D004315 9.4e-112 407.5 328 74.4
BraA03t12145Z Brassica rapa HOM05D003763 ORTHO05D004315 9.4e-112 407.5 328 74.4
arahy.Tifrunner.gnm1.ann1.HFU20B Arachis hypogaea HOM05D003763 ORTHO05D004315 1.2e-111 407.1 330 76.7
THA.LOC104814132 Tarenaya hassleriana HOM05D003763 ORTHO05D004315 1.6e-111 406.8 327 74.3
Aa31LG9G10510 Aethionema arabicum HOM05D003763 ORTHO05D004315 2.1e-111 406.4 327 74.6
Ciclev10021127m.g Citrus clementina HOM05D003763 ORTHO05D004315 2.1e-111 406.4 330 76.4
Hund14702 Selenicereus undatus HOM05D003763 ORTHO05D004315 2.1e-111 406.4 327 74.3
CSS0001568 Camellia sinensis var. sinensis HOM05D003763 ORTHO05D004315 3.6e-111 405.6 322 75.5
Potri.001G113000 Populus trichocarpa HOM05D003763 ORTHO05D004315 3.6e-111 405.6 336 73.8
Migut.E01271 Erythranthe guttata HOM05D003763 ORTHO05D004315 4.7e-111 405.2 327 75.2
TAR629G0773 Trochodendron aralioides HOM05D003763 ORTHO05D004315 6.1e-111 404.8 328 75.3
Sp7g20960 Schrenkiella parvula HOM05D003763 ORTHO05D004315 1.0e-110 404.1 328 73.8
BcaC01g04611 Brassica carinata HOM05D003763 ORTHO05D004315 1.8e-110 403.3 333 73.6
C03p35720 Brassica napus HOM05D003763 ORTHO05D004315 1.8e-110 403.3 333 73.6
Migut.E01022 Erythranthe guttata HOM05D003763 ORTHO05D004315 1.8e-110 403.3 330 75.2
arahy.Tifrunner.gnm1.ann1.RZ3A35 Arachis hypogaea HOM05D003763 ORTHO05D004315 3.0e-110 402.5 330 75.8
Thhalv10028695m.g Eutrema salsugineum HOM05D003763 ORTHO05D004315 3.0e-110 402.5 328 75.3
Carub.0007s1839 Capsella rubella HOM05D003763 ORTHO05D004315 4.0e-110 402.1 332 73.2
AT4G22890 Arabidopsis thaliana HOM05D003763 ORTHO05D004315 8.8e-110 401.0 328 73.8
BcaB01g02662 Brassica carinata HOM05D003763 ORTHO05D004315 8.8e-110 401.0 328 74.1
Sed0026462 Sechium edule HOM05D003763 ORTHO05D004315 8.8e-110 401.0 328 74.1
CSS0018103 Camellia sinensis var. sinensis HOM05D003763 ORTHO05D004315 1.2e-109 400.6 329 72.6
VMungo1215G1438 Vigna mungo HOM05D003763 ORTHO05D004315 1.5e-109 400.2 326 72.1
CAN.G1394.10 Capsicum annuum HOM05D003763 ORTHO05D004315 3.4e-109 399.1 294 78.2
Medtr4g102440 Medicago truncatula HOM05D003763 ORTHO05D004315 3.4e-109 399.1 326 75.8
TPR.G37646 Trifolium pratense HOM05D003763 ORTHO05D004315 4.4e-109 398.7 342 71.9
vmacro14015 Vaccinium macrocarpon HOM05D003763 ORTHO05D004315 5.7e-109 398.3 341 71.8
Aa31LG6G4960 Aethionema arabicum HOM05D003763 ORTHO05D004315 7.5e-109 397.9 329 72.0
Oeu056817.1 Olea europaea HOM05D003763 ORTHO05D004315 7.5e-109 397.9 334 72.8
BcaNung01019 Brassica carinata HOM05D003763 ORTHO05D004315 9.8e-109 397.5 325 73.2
A03p53850 Brassica napus HOM05D003763 ORTHO05D004315 9.8e-109 397.5 328 72.3
THA.LOC104806356 Tarenaya hassleriana HOM05D003763 ORTHO05D004315 9.8e-109 397.5 327 74.0
Glyma.01G214300 Glycine max HOM05D003763 ORTHO05D004315 3.7e-108 395.6 327 71.3
Hma1.2p1_0138F.1_g062780 Hydrangea macrophylla HOM05D003763 ORTHO05D004315 3.7e-108 395.6 340 71.2
C07p52250 Brassica napus HOM05D003763 ORTHO05D004315 4.9e-108 395.2 328 72.0
CARHR254330 Cardamine hirsuta HOM05D003763 ORTHO05D004315 6.3e-108 394.8 327 72.2
Lsat_1_v5_gn_6_78800 Lactuca sativa HOM05D003763 ORTHO05D004315 6.3e-108 394.8 328 72.3
AT4G11960 Arabidopsis thaliana HOM05D003763 ORTHO05D004315 8.3e-108 394.4 323 73.4
EL10Ac5g12684 Beta vulgaris HOM05D003763 ORTHO05D004315 1.4e-107 393.7 335 71.9
A01p14110 Brassica napus HOM05D003763 ORTHO05D004315 1.4e-107 393.7 324 73.1
BraA01t01359Z Brassica rapa HOM05D003763 ORTHO05D004315 1.4e-107 393.7 324 73.1
Lsat_1_v5_gn_6_8180 Lactuca sativa HOM05D003763 ORTHO05D004315 1.4e-107 393.7 330 72.1
BolC7t45719H Brassica oleracea HOM05D003763 ORTHO05D004315 1.8e-107 393.3 328 71.6
Thhalv10025739m.g Eutrema salsugineum HOM05D003763 ORTHO05D004315 1.8e-107 393.3 327 72.8
Sopen08g003700 Solanum pennellii HOM05D003763 ORTHO05D004315 2.4e-107 392.9 327 73.1
Oeu021144.1 Olea europaea HOM05D003763 ORTHO05D004315 5.4e-107 391.7 284 79.2
Peaxi162Scf00102g01354 Petunia axillaris HOM05D003763 ORTHO05D004315 7.0e-107 391.3 327 71.6
Phvul.002G152800 Phaseolus vulgaris HOM05D003763 ORTHO05D004315 9.2e-107 391.0 328 72.3
AL6G46730 Arabidopsis lyrata HOM05D003763 ORTHO05D004315 1.2e-106 390.6 323 73.1
PGSC0003DMG400012494 Solanum tuberosum HOM05D003763 ORTHO05D004315 1.2e-106 390.6 327 72.8
C01p17370 Brassica napus HOM05D003763 ORTHO05D004315 1.6e-106 390.2 324 72.5
BolC1t01675H Brassica oleracea HOM05D003763 ORTHO05D004315 1.6e-106 390.2 324 72.5
BcaC09g51065 Brassica carinata HOM05D003763 ORTHO05D004315 2.7e-106 389.4 324 72.5
Psat4g068320 Pisum sativum HOM05D003763 ORTHO05D004315 2.7e-106 389.4 325 69.8
TAR622G0836 Trochodendron aralioides HOM05D003763 ORTHO05D004315 2.7e-106 389.4 338 72.2
Ca_24565_v3 Cicer arietinum L. HOM05D003763 ORTHO05D004315 4.5e-106 388.7 327 70.6
CAN.G981.62 Capsicum annuum HOM05D003763 ORTHO05D004315 5.9e-106 388.3 327 71.9
Migut.A00895 Erythranthe guttata HOM05D003763 ORTHO05D004315 5.9e-106 388.3 322 72.7
CsaV3_3G003430 Cucumis sativus L. HOM05D003763 ORTHO05D004315 7.7e-106 387.9 322 72.4
Sopen08g028400 Solanum pennellii HOM05D003763 ORTHO05D004315 1.7e-105 386.7 328 71.6
Carub.0006s3106 Capsella rubella HOM05D003763 ORTHO05D004315 2.9e-105 386.0 329 72.0
DCAR_000890 Daucus carota HOM05D003763 ORTHO05D004315 2.9e-105 386.0 327 72.8
BcaNung01664 Brassica carinata HOM05D003763 ORTHO05D004315 3.8e-105 385.6 277 79.1
MELO3C014009.2 Cucumis melo HOM05D003763 ORTHO05D004315 3.8e-105 385.6 327 71.9
Nitab4.5_0010547g0050 Nicotiana tabacum HOM05D003763 ORTHO05D004315 3.8e-105 385.6 330 71.2
SalBow6G0972 Salvia bowleyana HOM05D003763 ORTHO05D004315 3.8e-105 385.6 327 72.2
Nn1g01278 Nelumbo nucifera HOM05D003763 ORTHO05D004315 5.0e-105 385.2 323 73.4
PGSC0003DMG400022731 Solanum tuberosum HOM05D003763 ORTHO05D004315 5.0e-105 385.2 328 71.0
Sc22g0000420 Simmondsia chinensis HOM05D003763 ORTHO05D004315 1.1e-104 384.0 327 70.6
Medtr5g011220 Medicago truncatula HOM05D003763 ORTHO05D004315 7.3e-104 381.3 331 70.4
Ah.12g057870 Amaranthus hybridus HOM05D003763 ORTHO05D004315 1.6e-103 380.2 334 70.1
HanXRQChr13g0414021 Helianthus annuus HOM05D003763 ORTHO05D004315 1.6e-103 380.2 326 70.6
MSTRG.13805 Avicennia marina HOM05D003763 ORTHO05D004315 2.1e-103 379.8 329 69.9
ECA240G4155 Erigeron canadensis HOM05D003763 ORTHO05D004315 3.6e-103 379.0 330 70.9
PSO478G4698 Papaver somniferum HOM05D003763 ORTHO05D004315 4.7e-103 378.6 328 70.1
CDE04G2291 Ceratophyllum demersum HOM05D003763 ORTHO05D004315 6.1e-103 378.3 327 70.3
Cc08_g13730 Coffea canephora HOM05D003763 ORTHO05D004315 1.8e-102 376.7 330 71.8
AUR62010559 Chenopodium quinoa HOM05D003763 ORTHO05D004315 4.0e-102 375.6 329 70.8
AUR62017330 Chenopodium quinoa HOM05D003763 ORTHO05D004315 8.9e-102 374.4 329 69.6
Actinidia27416 Actinidia chinensis HOM05D003763 ORTHO05D004315 1.5e-101 373.6 259 83.0
PSO782G5713 Papaver somniferum HOM05D003763 ORTHO05D004315 1.5e-101 373.6 328 69.2
Sed0016409 Sechium edule HOM05D003763 ORTHO05D004315 2.6e-101 372.9 331 70.4
Rhsim07G0096500 Rhododendron simsii HOM05D003763 ORTHO05D004315 3.4e-101 372.5 380 63.9
SalBow1G0491 Salvia bowleyana HOM05D003763 ORTHO05D004315 3.4e-101 372.5 293 75.8
unitig_52.g17229 Utricularia gibba HOM05D003763 ORTHO05D004315 3.4e-101 372.5 316 72.2
CARHR229930 Cardamine hirsuta HOM05D003763 ORTHO05D004315 4.4e-101 372.1 331 68.6
Aqoxy7G00504 Aquilegia oxysepala HOM05D003763 ORTHO05D004315 1.7e-100 370.2 333 69.4
Lj8C243T4 Lonicera japonica HOM05D003763 ORTHO05D004315 8.3e-100 367.9 260 81.9
Lj2g0000892 Lotus japonicus HOM05D003763 ORTHO05D004315 1.8e-99 366.7 328 70.4
ClCG00G002290 Citrullus lanatus HOM05D003763 ORTHO05D004315 3.2e-99 365.9 303 74.3
Nitab4.5_0002886g0120 Nicotiana tabacum HOM05D003763 ORTHO05D004315 5.4e-99 365.2 306 65.0
Nitab4.5_0001200g0070 Nicotiana tabacum HOM05D003763 ORTHO05D004315 2.0e-98 363.2 259 71.8
BraA03t14454Z Brassica rapa HOM05D003763 ORTHO05D004315 1.7e-97 360.1 303 71.6
PGR031G0886 Punica granatum HOM05D003763 ORTHO05D004315 3.9e-97 359.0 326 70.6
Zm00001eb064990 Zea mays HOM05D003763 ORTHO05D004315 3.3e-96 355.9 277 72.2
Solyc08g007770.4 Solanum lycopersicum HOM05D003763 ORTHO05D004315 4.7e-95 352.1 301 72.1
arahy.Tifrunner.gnm1.ann1.N69HTX Arachis hypogaea HOM05D003763 ORTHO05D004315 2.3e-94 349.7 333 66.4
Gohir.A08G176900 Gossypium hirsutum HOM05D003763 ORTHO05D004315 2.3e-94 349.7 231 89.2
Haze_08989 Corylus avellana HOM05D003763 ORTHO05D004315 3.1e-94 349.4 305 73.4
Lj2A202G55 Lonicera japonica HOM05D003763 ORTHO05D004315 6.8e-94 348.2 273 72.5
Solyc08g080050.4 Solanum lycopersicum HOM05D003763 ORTHO05D004315 3.4e-93 345.9 302 71.5
AL7G30630 Arabidopsis lyrata HOM05D003763 ORTHO05D004315 1.7e-92 343.6 231 85.7
ATR0661G459 Amborella trichopoda HOM05D003763 ORTHO05D004315 1.4e-91 340.5 261 74.3
HanXRQChr03g0084111 Helianthus annuus HOM05D003763 ORTHO05D004315 2.7e-90 336.3 312 66.3
Actinidia14012 Actinidia chinensis HOM05D003763 ORTHO05D004315 1.1e-88 330.9 226 85.0
Os03g0857400 Oryza sativa ssp. japonica HOM05D003763 ORTHO05D004315 1.5e-88 330.5 325 64.6
Pp3c10_15390 Physcomitrium patens HOM05D003763 ORTHO05D004315 1.7e-84 317.0 268 65.3
Nitab4.5_0003274g0090 Nicotiana tabacum HOM05D003763 ORTHO05D004315 1.2e-82 310.8 326 54.3
Mapoly0048s0082 Marchantia polymorpha HOM05D003763 ORTHO05D004315 1.6e-82 310.5 261 68.2
SEGI_18243 Sequoiadendron giganteum HOM05D003763 ORTHO05D004315 8.6e-81 304.7 276 61.2
ClCG00G000150 Citrullus lanatus HOM05D003763 ORTHO05D004315 1.1e-80 304.3 327 62.1
ClCG10G003400 Citrullus lanatus HOM05D003763 ORTHO05D004315 1.1e-80 304.3 327 62.1
AagrBONN_evm.TU.Sc2ySwM_362.2619 Anthoceros agrestis HOM05D003763 ORTHO05D004315 4.7e-79 298.9 253 60.9
SMO356G0021 Selaginella moellendorffii HOM05D003763 ORTHO05D004315 3.2e-75 286.2 250 56.8
Peaxi162Scf00620g00056 Petunia axillaris HOM05D003763 ORTHO05D004315 1.2e-74 284.3 362 55.5
CiPaw.11G143200 Carya illinoinensis HOM05D003763 ORTHO05D004315 1.7e-73 280.4 236 78.8
unitig_699.g19760 Utricularia gibba HOM05D003763 ORTHO05D004315 7.3e-72 275.0 253 71.9
Psat2g180880 Pisum sativum HOM05D003763 ORTHO05D004315 1.5e-69 267.3 259 68.0
Psat6g136800 Pisum sativum HOM05D003763 ORTHO05D004315 4.4e-69 265.8 196 80.1
Dinv39038 Davidia involucrata HOM05D003763 ORTHO05D004315 9.9e-69 264.6 247 73.7
Actinidia05236 Actinidia chinensis HOM05D003763 ORTHO05D004315 1.7e-68 263.8 246 59.3
CBR_g23735 Chara braunii HOM05D003763 ORTHO05D004315 7.9e-58 228.4 273 44.3
Cre07.g340200 Chlamydomonas reinhardtii HOM05D003763 ORTHO05D004315 6.2e-55 218.8 303 47.9
Zm00001eb065010 Zea mays HOM05D003763 ORTHO05D004315 3.4e-53 213.0 149 71.1
Gohir.A12G223632 Gossypium hirsutum HOM05D003763 ORTHO05D004315 2.7e-50 203.4 124 82.3
CDE07G1293 Ceratophyllum demersum HOM05D003763 ORTHO05D004315 7.9e-50 201.8 125 79.2
Glyma.12G170600 Glycine max HOM05D003763 ORTHO05D004315 4.5e-45 186.0 149 65.1
Gohir.A12G223566 Gossypium hirsutum HOM05D003763 ORTHO05D004315 6.0e-42 175.6 132 75.8
MSTRG.12034 Avicennia marina HOM05D003763 ORTHO05D004315 1.3e-41 174.5 192 67.2
CDE07G1747 Ceratophyllum demersum HOM05D003763 ORTHO05D004315 1.6e-39 167.5 216 58.3
Actinidia02868 Actinidia chinensis HOM05D003763 ORTHO05D004315 1.1e-30 138.3 261 37.2
HPP92_014954 Vanilla planifolia HOM05D003763 ORTHO05D004315 1.1e-30 138.3 99 74.7
Lsat_1_v5_gn_8_1701 Lactuca sativa HOM05D003763 ORTHO05D004315 1.8e-30 137.5 92 73.9
Zm00001eb305640 Zea mays HOM05D003763 ORTHO05D004315 1.8e-30 137.5 143 55.9
TPR.G14577 Trifolium pratense HOM05D003763 ORTHO05D004315 4.5e-29 132.9 108 73.1
Zm00001eb065020 Zea mays HOM05D003763 ORTHO05D004315 1.0e-25 121.7 87 67.8
BcaC02g09855 Brassica carinata HOM05D003763 ORTHO05D004315 1.4e-19 101.3 157 52.2
Pp3c3_19870 Physcomitrium patens HOM05D003763 ORTHO05D004315 8.8e-17 92.0 107 66.4
C04p35880 Brassica napus HOM05D003763 ORTHO05D004315 5.7e-16 89.4 156 51.9
TPR.G23383 Trifolium pratense HOM05D003424 ORTHO05D004025 2.2e-15 87.4 122 45.9
Os08g0526300 Oryza sativa ssp. japonica HOM05D003763 ORTHO05D004315 1.4e-14 84.7 83 77.1
arahy.Tifrunner.gnm1.ann1.AG3Z3P Arachis hypogaea HOM05D003763 ORTHO05D004315 2.9e-12 77.0 93 48.4


User provided reference genes

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