Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN08G0728 Fragaria x ananassa HOM05D002725 ORTHO05D003279 1.2e-32 142.5 71 100.0
FvH4_1g17710 Fragaria vesca HOM05D002725 ORTHO05D003279 1.5e-14 82.4 48 87.5
FAN23G0685 Fragaria x ananassa HOM05D002725 ORTHO05D003279 1.5e-14 82.4 48 87.5
FAN26G2216 Fragaria x ananassa HOM05D002725 ORTHO05D003279 1.5e-14 82.4 48 87.5
SGA_v2.0_scaffold36G14409 Striga asiatica HOM05D002725 ORTHO05D003279 4.9e-13 77.4 48 79.2
FAN19G1008 Fragaria x ananassa HOM05D002725 ORTHO05D003279 2.4e-12 75.1 44 86.4
MD02G1186000 Malus domestica HOM05D002725 ORTHO05D003279 5.4e-12 73.9 48 83.3
Prupe.5G061600 Prunus persica HOM05D002725 ORTHO05D003279 5.4e-12 73.9 48 83.3
Prupe.6G220500 Prunus persica HOM05D002725 ORTHO05D003279 5.4e-12 73.9 48 83.3
Rhsim12G0121500 Rhododendron simsii HOM05D002725 ORTHO05D003279 7.1e-12 73.6 48 83.3
Dinv24871 Davidia involucrata HOM05D002725 ORTHO05D003279 1.2e-11 72.8 48 81.2
Glyma.16G063000 Glycine max HOM05D002725 ORTHO05D003279 1.6e-11 72.4 48 81.2
Glyma.19G082500 Glycine max HOM05D002725 ORTHO05D003279 1.6e-11 72.4 48 81.2
Gohir.A03G140600 Gossypium hirsutum HOM05D002725 ORTHO05D003279 1.6e-11 72.4 48 81.2
Gohir.D02G163400 Gossypium hirsutum HOM05D002725 ORTHO05D003279 1.6e-11 72.4 48 81.2
Gorai.005G183400 Gossypium raimondii HOM05D002725 ORTHO05D003279 1.6e-11 72.4 48 81.2
Hma1.2p1_0867F.1_g230300 Hydrangea macrophylla HOM05D002725 ORTHO05D003279 1.6e-11 72.4 48 81.2
MBI10_g36211_MAGBIO Magnolia biondii HOM05D002725 ORTHO05D003279 1.6e-11 72.4 48 81.2
Nn3g16917 Nelumbo nucifera HOM05D002725 ORTHO05D003279 1.6e-11 72.4 48 81.2
Potri.002G176000 Populus trichocarpa HOM05D002725 ORTHO05D003279 1.6e-11 72.4 48 81.2
CiPaw.14G100600 Carya illinoinensis HOM05D002725 ORTHO05D003279 2.1e-11 72.0 48 81.2
Psat3g161280 Pisum sativum HOM05D002725 ORTHO05D003279 2.7e-11 71.6 48 81.2
Phvul.003G041300 Phaseolus vulgaris HOM05D002725 ORTHO05D003279 3.5e-11 71.2 48 79.2
Phvul.008G149300 Phaseolus vulgaris HOM05D002725 ORTHO05D003279 3.5e-11 71.2 48 79.2
Sabra02G0137700 Salix brachista HOM05D002725 ORTHO05D003279 3.5e-11 71.2 48 81.2
vmacro16261 Vaccinium macrocarpon HOM05D002725 ORTHO05D003279 3.5e-11 71.2 48 81.2
VMungo0464G0614 Vigna mungo HOM05D002725 ORTHO05D003279 3.5e-11 71.2 48 79.2
TPR.G37028 Trifolium pratense HOM05D002725 ORTHO05D003279 4.6e-11 70.9 48 81.2
CDE11G0115 Ceratophyllum demersum HOM05D002725 ORTHO05D003279 6.0e-11 70.5 48 79.2
Haze_12164 Corylus avellana HOM05D002725 ORTHO05D003279 6.0e-11 70.5 48 79.2
FAN18G3093 Fragaria x ananassa HOM05D002725 ORTHO05D003279 6.0e-11 70.5 35 100.0
MBI18_g25085_MAGBIO Magnolia biondii HOM05D002725 ORTHO05D003279 6.0e-11 70.5 48 79.2
PGR119G1015 Punica granatum HOM05D002725 ORTHO05D003279 6.0e-11 70.5 48 79.2
Duzib106G0624 Durio zibethinus HOM05D002725 ORTHO05D003279 7.8e-11 70.1 48 79.2
Duzib268G0345 Durio zibethinus HOM05D002725 ORTHO05D003279 7.8e-11 70.1 48 79.2
Mapoly0042s0037 Marchantia polymorpha HOM05D002725 ORTHO05D003279 7.8e-11 70.1 48 79.2
GSVIVG01020223001 Vitis vinifera HOM05D002725 ORTHO05D003279 7.8e-11 70.1 48 79.2
Lalb_Chr22g0360531 Lupinus albus HOM05D002725 ORTHO05D003279 1.0e-10 69.7 48 79.2
SalBow2G2496 Salvia bowleyana HOM05D002725 ORTHO05D003279 1.0e-10 69.7 59 64.4
AagrBONN_evm.TU.Sc2ySwM_344.2036 Anthoceros agrestis HOM05D002725 ORTHO05D003279 1.3e-10 69.3 48 77.1
AagrBONN_evm.TU.Sc2ySwM_368.3392 Anthoceros agrestis HOM05D002725 ORTHO05D003279 1.3e-10 69.3 48 77.1
Ca_06608_v3 Cicer arietinum L. HOM05D002725 ORTHO05D003279 1.3e-10 69.3 48 77.1
Ciclev10031363m.g Citrus clementina HOM05D002725 ORTHO05D003279 1.3e-10 69.3 48 77.1
HanXRQChr08g0234721 Helianthus annuus HOM05D002725 ORTHO05D003279 1.3e-10 69.3 48 77.1
QL03p061701 Quercus lobata HOM05D002725 ORTHO05D003279 1.3e-10 69.3 48 77.1
arahy.Tifrunner.gnm1.ann1.D69TB6 Arachis hypogaea HOM05D002725 ORTHO05D003279 1.7e-10 68.9 48 77.1
arahy.Tifrunner.gnm1.ann1.JTBU3D Arachis hypogaea HOM05D002725 ORTHO05D003279 1.7e-10 68.9 48 77.1
arahy.Tifrunner.gnm1.ann1.JXF13M Arachis hypogaea HOM05D002725 ORTHO05D003279 1.7e-10 68.9 48 77.1
arahy.Tifrunner.gnm1.ann1.LYET28 Arachis hypogaea HOM05D002725 ORTHO05D003279 1.7e-10 68.9 48 77.1
CANSAT56G0776 Cannabis sativa HOM05D002725 ORTHO05D003279 1.7e-10 68.9 48 77.1
CiPaw.05G149700 Carya illinoinensis HOM05D002725 ORTHO05D003279 1.7e-10 68.9 48 79.2
Eucgr.H02616 Eucalyptus grandis HOM05D002725 ORTHO05D003279 2.3e-10 68.6 48 77.1
Pp3c5_26190 Physcomitrium patens HOM05D002725 ORTHO05D003279 2.3e-10 68.6 48 77.1
Ca_25613_v3 Cicer arietinum L. HOM05D002725 ORTHO05D003279 3.0e-10 68.2 48 75.0
Migut.K01129 Erythranthe guttata HOM05D002725 ORTHO05D003279 3.0e-10 68.2 48 75.0
PSO832G3550 Papaver somniferum HOM05D002725 ORTHO05D003279 3.0e-10 68.2 48 79.2
Manes.12G030200 Manihot esculenta HOM05D002725 ORTHO05D003279 3.9e-10 67.8 48 77.1
TPR.G9070 Trifolium pratense HOM05D002725 ORTHO05D003279 3.9e-10 67.8 48 77.1
Aqoxy3G02968 Aquilegia oxysepala HOM05D002725 ORTHO05D003279 5.1e-10 67.4 48 75.0
ATR0680G011 Amborella trichopoda HOM05D002725 ORTHO05D003279 8.6e-10 66.6 48 75.0
Cc11_g14540 Coffea canephora HOM05D002725 ORTHO05D003279 1.1e-09 66.2 48 77.1
DCAR_031095 Daucus carota HOM05D002725 ORTHO05D003279 1.1e-09 66.2 48 72.9
ECA233G4284 Erigeron canadensis HOM05D002725 ORTHO05D003279 1.1e-09 66.2 48 72.9
Actinidia01708 Actinidia chinensis HOM05D002725 ORTHO05D003279 1.5e-09 65.9 48 75.0
Actinidia08169 Actinidia chinensis HOM05D002725 ORTHO05D003279 1.5e-09 65.9 47 76.6
AUR62005361 Chenopodium quinoa HOM05D002725 ORTHO05D003279 1.5e-09 65.9 48 75.0
Lsat_1_v5_gn_1_10560 Lactuca sativa HOM05D002725 ORTHO05D003279 1.5e-09 65.9 48 75.0
Lsat_1_v5_gn_8_158161 Lactuca sativa HOM05D002725 ORTHO05D003279 1.5e-09 65.9 48 75.0
SGA_v2.0_scaffold165G38254 Striga asiatica HOM05D002725 ORTHO05D003279 1.5e-09 65.9 56 58.9
ClCG05G025230 Citrullus lanatus HOM05D002725 ORTHO05D003279 1.9e-09 65.5 48 75.0
MELO3C012005.2 Cucumis melo HOM05D002725 ORTHO05D003279 1.9e-09 65.5 48 75.0
CsaV3_5G031650 Cucumis sativus L. HOM05D002725 ORTHO05D003279 1.9e-09 65.5 48 75.0
MD15G1297400 Malus domestica HOM05D002725 ORTHO05D003279 2.5e-09 65.1 48 77.1
SHI27131 Sapria himalayana HOM05D002725 ORTHO05D003279 2.5e-09 65.1 50 68.0
AUR62014016 Chenopodium quinoa HOM05D002725 ORTHO05D003279 4.3e-09 64.3 48 72.9
CBR_g50945 Chara braunii HOM05D002725 ORTHO05D003279 5.6e-09 63.9 49 71.4
TPR.G10571 Trifolium pratense HOM05D002725 ORTHO05D003279 5.6e-09 63.9 48 72.9
Ah.02g129870 Amaranthus hybridus HOM05D002725 ORTHO05D003279 9.5e-09 63.2 48 70.8
Sed0004453 Sechium edule HOM05D002725 ORTHO05D003279 9.5e-09 63.2 48 75.0
TAR629G1020 Trochodendron aralioides HOM05D002725 ORTHO05D003279 9.5e-09 63.2 44 77.3
Cpa.g.sc824.3 Carica papaya HOM05D002725 ORTHO05D003279 1.2e-08 62.8 48 75.0
FAN28G0598 Fragaria x ananassa HOM05D002725 ORTHO05D003279 1.6e-08 62.4 48 68.8
RcHm_v2.0_Chr2g0108041 Rosa chinensis HOM05D002725 ORTHO05D003279 1.6e-08 62.4 48 68.8
HPP92_018031 Vanilla planifolia HOM05D002725 ORTHO05D003279 1.6e-08 62.4 57 63.2
unitig_22.g6933 Utricularia gibba HOM05D002725 ORTHO05D003279 4.7e-08 60.8 48 70.8
MSTRG.7887 Avicennia marina HOM05D002725 ORTHO05D003279 8.1e-08 60.1 48 68.8
DCAR_025614 Daucus carota HOM05D002725 ORTHO05D003279 1.1e-07 59.7 48 66.7
THA.LOC104812782 Tarenaya hassleriana HOM05D002725 ORTHO05D003279 1.4e-07 59.3 39 82.1
SMO139G0072 Selaginella moellendorffii HOM05D002725 ORTHO05D003279 1.8e-07 58.9 53 66.0
EL10Ac6g13658 Beta vulgaris HOM05D002725 ORTHO05D003279 2.4e-07 58.5 44 72.7
COL.COLO4_32664 Corchorus olitorius HOM05D002725 ORTHO05D003279 2.4e-07 58.5 46 71.7
Potri.014G102800 Populus trichocarpa HOM05D002725 ORTHO05D003279 3.1e-07 58.2 48 64.6
THA.LOC104816751 Tarenaya hassleriana HOM05D002725 ORTHO05D003279 5.2e-07 57.4 39 79.5
Cre10.g424850 Chlamydomonas reinhardtii HOM05D002725 ORTHO05D003279 2.0e-06 55.5 50 60.0
Aqoxy3G02785 Aquilegia oxysepala HOM05D002725 ORTHO05D003279 2.6e-06 55.1 44 68.2
PSO063G5148 Papaver somniferum HOM05D002725 ORTHO05D003279 2.6e-06 55.1 48 62.5
PSO832G2366 Papaver somniferum HOM05D002725 ORTHO05D003279 2.6e-06 55.1 48 62.5
Aa31LG2G10130 Aethionema arabicum HOM05D002725 ORTHO05D003279 4.4e-06 54.3 39 74.4
Duzib248G0107 Durio zibethinus HOM05D002725 ORTHO05D003279 4.4e-06 54.3 44 65.9


User provided reference genes

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