Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN08G0558 Fragaria x ananassa HOM05D002170 ORTHO05D007478 2.6e-250 868.2 432 100.0
FvH4_5g17680 Fragaria vesca HOM05D002170 ORTHO05D007478 1.4e-248 862.4 432 99.3
FAN18G3495 Fragaria x ananassa HOM05D002170 ORTHO05D007478 1.9e-248 862.1 432 99.1
FAN04G0031 Fragaria x ananassa HOM05D002170 ORTHO05D007478 9.2e-248 859.8 432 98.8
RcHm_v2.0_Chr7g0177971 Rosa chinensis HOM05D002170 ORTHO05D007478 1.4e-232 809.3 432 94.0
Prupe.5G236800 Prunus persica HOM05D002170 ORTHO05D007478 1.6e-223 779.2 432 90.7
MD06G1232500 Malus domestica HOM05D002170 ORTHO05D007478 2.8e-220 768.5 432 88.4
MD14G1239300 Malus domestica HOM05D002170 ORTHO05D007478 6.5e-217 757.3 432 87.0
CANSAT35G0706 Cannabis sativa HOM05D002170 ORTHO05D007478 5.5e-216 754.2 432 87.5
Sed0008892 Sechium edule HOM05D002170 ORTHO05D007478 1.3e-209 733.0 433 85.9
TAR629G0118 Trochodendron aralioides HOM05D002170 ORTHO05D007478 1.3e-209 733.0 432 84.7
PGR044G0130 Punica granatum HOM05D002170 ORTHO05D007478 6.5e-209 730.7 433 84.3
Haze_18913 Corylus avellana HOM05D002170 ORTHO05D007478 1.4e-208 729.6 432 85.4
Potri.015G030600 Populus trichocarpa HOM05D002170 ORTHO05D007478 2.1e-207 725.7 433 84.5
Cfa020634 Carpinus fangiana HOM05D002170 ORTHO05D007478 2.7e-207 725.3 433 85.0
Sabra15G0025500 Salix brachista HOM05D002170 ORTHO05D007478 3.6e-207 724.9 433 84.5
QL10p031496 Quercus lobata HOM05D002170 ORTHO05D007478 4.6e-207 724.5 433 84.3
CiPaw.16G097200 Carya illinoinensis HOM05D002170 ORTHO05D007478 6.1e-207 724.2 432 85.0
Thecc.03G062200 Theobroma cacao HOM05D002170 ORTHO05D007478 2.3e-206 722.2 432 83.6
ClCG04G010450 Citrullus lanatus HOM05D002170 ORTHO05D007478 3.0e-206 721.8 432 84.3
COL.COLO4_18962 Corchorus olitorius HOM05D002170 ORTHO05D005003 3.0e-206 721.8 433 84.1
Lj2g0009559 Lotus japonicus HOM05D002170 ORTHO05D007478 8.8e-206 720.3 432 82.9
Eucgr.K02286 Eucalyptus grandis HOM05D002170 ORTHO05D007478 2.5e-205 718.8 435 83.4
Ca_25357_v3 Cicer arietinum L. HOM05D002170 ORTHO05D007478 5.7e-205 717.6 433 82.2
CsaV3_1G007330 Cucumis sativus L. HOM05D002170 ORTHO05D007478 5.7e-205 717.6 433 84.3
Medtr6g071210 Medicago truncatula HOM05D002170 ORTHO05D007478 9.7e-205 716.8 433 82.7
Gohir.A09G175200 Gossypium hirsutum HOM05D002170 ORTHO05D007478 1.3e-204 716.5 434 82.5
Gorai.006G191200 Gossypium raimondii HOM05D002170 ORTHO05D007478 1.3e-204 716.5 434 82.5
TWI81G0098 Tripterygium wilfordii HOM05D002170 ORTHO05D007478 1.3e-204 716.5 433 82.9
Hma1.2p1_0471F.1_g159440 Hydrangea macrophylla HOM05D002170 ORTHO05D007478 1.7e-204 716.1 440 83.4
Manes.06G002900 Manihot esculenta HOM05D002170 ORTHO05D007478 1.7e-204 716.1 432 82.4
MELO3C002149.2 Cucumis melo HOM05D002170 ORTHO05D007478 2.2e-204 715.7 432 83.6
CAN.G637.44 Capsicum annuum HOM05D002170 ORTHO05D007478 2.8e-204 715.3 434 82.7
Sopen03g028630 Solanum pennellii HOM05D002170 ORTHO05D007478 2.8e-204 715.3 438 82.6
Lalb_Chr14g0370711 Lupinus albus HOM05D002170 ORTHO05D007478 3.7e-204 714.9 433 81.5
PGSC0003DMG400033683 Solanum tuberosum HOM05D002170 ORTHO05D007478 3.7e-204 714.9 434 83.6
Sc04g0004500 Simmondsia chinensis HOM05D002170 ORTHO05D007478 4.8e-204 714.5 433 82.9
Solyc03g097910.4 Solanum lycopersicum HOM05D002170 ORTHO05D007478 6.3e-204 714.1 438 82.6
Duzib068G1477 Durio zibethinus HOM05D002170 ORTHO05D007478 8.2e-204 713.8 432 82.4
arahy.Tifrunner.gnm1.ann1.DTQ5EB Arachis hypogaea HOM05D002170 ORTHO05D007478 1.1e-203 713.4 435 83.0
CSS0042449 Camellia sinensis var. sinensis HOM05D002170 ORTHO05D007478 1.1e-203 713.4 432 82.9
Duzib084G0411 Durio zibethinus HOM05D002170 ORTHO05D007478 2.4e-203 712.2 432 82.6
Gohir.D09G169700 Gossypium hirsutum HOM05D002170 ORTHO05D007478 3.1e-203 711.8 434 82.0
Glyma.07G105400 Glycine max HOM05D002170 ORTHO05D007478 6.9e-203 710.7 432 81.9
CSS0009402 Camellia sinensis var. sinensis HOM05D002170 ORTHO05D007478 9.1e-203 710.3 432 82.6
Glyma.09G172700 Glycine max HOM05D002170 ORTHO05D007478 1.2e-202 709.9 432 82.2
Lalb_Chr22g0353421 Lupinus albus HOM05D002170 ORTHO05D007478 1.5e-202 709.5 433 81.8
Phvul.004G148000 Phaseolus vulgaris HOM05D002170 ORTHO05D007478 1.5e-202 709.5 432 82.6
arahy.Tifrunner.gnm1.ann1.U6RNCV Arachis hypogaea HOM05D002170 ORTHO05D007478 2.0e-202 709.1 435 82.8
EL10Ac2g03531 Beta vulgaris HOM05D002170 ORTHO05D007478 2.0e-202 709.1 417 85.1
Ciclev10020301m.g Citrus clementina HOM05D002170 ORTHO05D007478 2.0e-202 709.1 432 82.2
TPR.G22320 Trifolium pratense HOM05D002170 ORTHO05D007478 2.6e-202 708.8 432 82.4
PSO384G2182 Papaver somniferum HOM05D002170 ORTHO05D007478 3.4e-202 708.4 432 80.8
PSO339G1858 Papaver somniferum HOM05D002170 ORTHO05D007478 7.7e-202 707.2 432 80.6
Cc04_g09360 Coffea canephora HOM05D002170 ORTHO05D007478 1.0e-201 706.8 434 82.0
Rhsim08G0127800 Rhododendron simsii HOM05D002170 ORTHO05D007478 5.0e-201 704.5 434 80.9
SalBow5G3655 Salvia bowleyana HOM05D002170 ORTHO05D007478 6.5e-201 704.1 419 82.8
Aqoxy3G04073 Aquilegia oxysepala HOM05D002170 ORTHO05D007478 1.9e-200 702.6 397 86.9
MSTRG.9351 Avicennia marina HOM05D002170 ORTHO05D007478 4.2e-200 701.4 432 81.0
ECA232G0406 Erigeron canadensis HOM05D002170 ORTHO05D007478 7.2e-200 700.7 398 85.9
Migut.D01219 Erythranthe guttata HOM05D002170 ORTHO05D007478 1.2e-199 699.9 435 82.5
Oeu023513.1 Olea europaea HOM05D002170 ORTHO05D007478 1.6e-199 699.5 434 81.1
Cpa.g.sc3.360 Carica papaya HOM05D002170 ORTHO05D007478 6.1e-199 697.6 434 80.9
vmacro17769 Vaccinium macrocarpon HOM05D002170 ORTHO05D007478 1.8e-198 696.0 435 80.5
Actinidia09052 Actinidia chinensis HOM05D002170 ORTHO05D007478 2.3e-198 695.7 402 85.1
Hund22449 Selenicereus undatus HOM05D002170 ORTHO05D007478 3.0e-198 695.3 411 84.9
Atru.BG.197.p Acer truncatum HOM05D002170 ORTHO05D007478 8.8e-198 693.7 379 88.9
THA.LOC104820334 Tarenaya hassleriana HOM05D002170 ORTHO05D007478 1.1e-197 693.3 398 85.7
Ah.16g108010 Amaranthus hybridus HOM05D002170 ORTHO05D007478 1.5e-197 693.0 432 81.9
CDE06G2490 Ceratophyllum demersum HOM05D002170 ORTHO05D007478 1.5e-197 693.0 432 79.9
Peaxi162Scf00171g01030 Petunia axillaris HOM05D002170 ORTHO05D007478 1.5e-197 693.0 433 81.5
HanXRQChr15g0492101 Helianthus annuus HOM05D002170 ORTHO05D007478 3.3e-197 691.8 398 85.7
Lsat_1_v5_gn_0_10461 Lactuca sativa HOM05D002170 ORTHO05D007478 2.2e-196 689.1 427 79.9
DCAR_003532 Daucus carota HOM05D002170 ORTHO05D007478 3.7e-196 688.3 436 80.0
HanXRQChr16g0511571 Helianthus annuus HOM05D002170 ORTHO05D007478 4.8e-196 688.0 431 79.8
Lj9C416G6 Lonicera japonica HOM05D002170 ORTHO05D007478 5.3e-195 684.5 422 80.8
A05p32010 Brassica napus HOM05D002170 ORTHO05D007478 3.5e-194 681.8 397 83.1
C05p48530 Brassica napus HOM05D002170 ORTHO05D007478 4.5e-194 681.4 434 78.1
AUR62041617 Chenopodium quinoa HOM05D002170 ORTHO05D007478 2.9e-193 678.7 433 79.9
Carub.0003s1752 Capsella rubella HOM05D002170 ORTHO05D007478 3.8e-193 678.3 397 83.4
GSVIVG01008478001 Vitis vinifera HOM05D002170 ORTHO05D007478 5.0e-193 677.9 368 89.7
BolC5t33589H Brassica oleracea HOM05D002170 ORTHO05D007478 8.5e-193 677.2 434 77.6
CARHR093160 Cardamine hirsuta HOM05D002170 ORTHO05D007478 8.5e-193 677.2 397 83.4
CiPaw.15G147300 Carya illinoinensis HOM05D002170 ORTHO05D007478 8.5e-193 677.2 368 89.1
SEGI_10571 Sequoiadendron giganteum HOM05D002170 ORTHO05D007478 1.9e-192 676.0 429 78.6
HPP92_007961 Vanilla planifolia HOM05D002170 ORTHO05D007478 7.2e-192 674.1 388 84.3
BraA05t22032Z Brassica rapa HOM05D002170 ORTHO05D007478 1.2e-191 673.3 446 76.5
Thhalv10020777m.g Eutrema salsugineum HOM05D002170 ORTHO05D007478 1.6e-191 672.9 397 81.9
Atru.chr9.1597 Acer truncatum HOM05D002170 ORTHO05D007478 6.1e-191 671.0 399 84.0
Os02g0736400 Oryza sativa ssp. japonica HOM05D002170 ORTHO05D007478 8.0e-191 670.6 409 81.4
Zm00001eb253890 Zea mays HOM05D002170 ORTHO05D007478 1.0e-190 670.2 386 83.7
A01p36570 Brassica napus HOM05D002170 ORTHO05D007478 1.4e-190 669.8 401 82.8
BcaNung05883 Brassica carinata HOM05D002170 ORTHO05D007478 1.8e-190 669.5 398 82.7
BcaC09g48741 Brassica carinata HOM05D002170 ORTHO05D007478 3.9e-190 668.3 402 82.8
BcaB04g18965 Brassica carinata HOM05D002170 ORTHO05D007478 6.7e-190 667.5 397 82.4
Sp3g15930 Schrenkiella parvula HOM05D002170 ORTHO05D007478 8.8e-190 667.2 397 82.1
AT3G17810 Arabidopsis thaliana HOM05D002170 ORTHO05D007478 1.5e-189 666.4 397 82.4
C01p46400 Brassica napus HOM05D002170 ORTHO05D007478 2.0e-189 666.0 402 82.6
BcaB04g20814 Brassica carinata HOM05D002170 ORTHO05D007478 3.3e-189 665.2 397 82.1
BolC1t04600H Brassica oleracea HOM05D002170 ORTHO05D007478 1.1e-187 660.2 402 82.1
AL3G30970 Arabidopsis lyrata HOM05D002170 ORTHO05D007478 1.4e-187 659.8 397 81.4
BraA01t03721Z Brassica rapa HOM05D002170 ORTHO05D007478 1.6e-186 656.4 405 80.7
Nitab4.5_0000430g0180 Nicotiana tabacum HOM05D002170 ORTHO05D007478 1.6e-186 656.4 440 77.0
Nitab4.5_0006581g0020 Nicotiana tabacum HOM05D002170 ORTHO05D007478 2.0e-186 656.0 440 76.8
ATR0118G019 Amborella trichopoda HOM05D002170 ORTHO05D007478 6.5e-185 651.0 377 83.6
AUR62036004 Chenopodium quinoa HOM05D002170 ORTHO05D007478 1.2e-183 646.7 368 86.7
Aa31LG8G4690 Aethionema arabicum HOM05D002170 ORTHO05D007478 1.4e-182 643.3 461 71.4
Dinv05998 Davidia involucrata HOM05D002170 ORTHO05D007478 2.3e-182 642.5 383 84.3
Pp3c20_21870 Physcomitrium patens HOM05D002170 ORTHO05D007478 7.7e-178 627.5 399 76.9
AagrBONN_evm.TU.Sc2ySwM_362.1270 Anthoceros agrestis HOM05D002170 ORTHO05D007478 1.7e-177 626.3 386 76.2
Psat1g029560 Pisum sativum HOM05D002170 ORTHO05D007478 4.2e-176 621.7 386 81.6
SMO356G0689 Selaginella moellendorffii HOM05D002170 ORTHO05D007478 2.0e-173 612.8 392 75.3
Pp3c23_13670 Physcomitrium patens HOM05D002170 ORTHO05D007478 3.4e-173 612.1 379 78.4
Mapoly0033s0018 Marchantia polymorpha HOM05D002170 ORTHO05D007478 1.3e-172 610.1 412 72.3
CBR_g39071 Chara braunii HOM05D002170 ORTHO05D007478 3.3e-160 568.9 378 71.4
MCO10G163 Micromonas commoda HOM05D002170 ORTHO05D007478 3.3e-160 568.9 378 71.2
MBI19_g09384_MAGBIO Magnolia biondii HOM05D003263 ORTHO05D004801 3.7e-156 555.4 345 82.6
BcaC01g03730 Brassica carinata HOM05D002170 ORTHO05D007478 8.3e-156 554.3 382 73.3
SHI19063 Sapria himalayana HOM05D002170 ORTHO05D007478 1.4e-155 553.5 327 80.4
CDE04G1365 Ceratophyllum demersum HOM05D002170 ORTHO05D007478 4.6e-154 548.5 393 72.0
PRCOL_00005290 Prasinoderma coloniale HOM05D002170 ORTHO05D007478 1.7e-153 546.6 369 72.1
Cre13.g578750 Chlamydomonas reinhardtii HOM05D002170 ORTHO05D007478 6.0e-146 521.5 378 66.4
unitig_27.g25082 Utricularia gibba HOM05D002170 ORTHO05D007478 2.7e-138 496.1 288 83.3
BolC3t17203H Brassica oleracea HOM05D002170 ORTHO05D007478 3.3e-128 462.6 299 76.6
C03p49210 Brassica napus HOM05D002170 ORTHO05D007478 3.6e-127 459.1 409 59.9
Potri.012G043300 Populus trichocarpa HOM05D002170 ORTHO05D007478 2.5e-112 409.8 267 78.3
Oeu016182.1 Olea europaea HOM05D002170 ORTHO05D007478 1.9e-107 393.7 280 73.2
Haze_26546 Corylus avellana HOM05D002170 ORTHO05D007478 2.6e-72 276.9 358 41.9
SGA_v2.0_scaffold40G15643 Striga asiatica HOM05D002170 ORTHO05D007478 7.0e-70 268.9 189 76.2
Haze_27328 Corylus avellana HOM05D002170 ORTHO05D007478 1.2e-69 268.1 334 42.8
SGA_v2.0_scaffold1356G53925 Striga asiatica HOM05D002170 ORTHO05D007478 2.0e-53 214.2 118 87.3
Solyc02g044040.3 Solanum lycopersicum HOM05D002170 ORTHO05D390875 2.0e-48 197.6 107 86.9
Phvul.008G096200 Phaseolus vulgaris HOM05D002170 ORTHO05D023792 3.1e-33 147.1 84 82.1
BraA03t13196Z Brassica rapa HOM05D002170 ORTHO05D023792 1.1e-30 138.7 84 78.6
A03p40410 Brassica napus HOM05D002170 ORTHO05D023792 4.1e-30 136.7 84 76.2
Psat3g071120 Pisum sativum HOM05D002170 ORTHO05D327785 9.5e-27 125.6 125 58.4
unitig_27.g25081 Utricularia gibba HOM05D002170 ORTHO05D007478 5.8e-24 116.3 80 72.5
Ca_22557_v3 Cicer arietinum L. HOM05D002170 ORTHO05D148971 1.3e-23 115.2 57 87.7
MSTRG.4628 Avicennia marina HOM05D002170 ORTHO05D023792 1.2e-21 108.6 79 69.6
MD05G1052900 Malus domestica HOM05D002170 ORTHO05D000222 4.4e-16 90.1 59 79.7
Pp3s46_240 Physcomitrium patens HOM05D003658 ORTHO05D004457 7.6e-16 89.4 195 32.8
Ca_03420_v3 Cicer arietinum L. HOM05D002170 ORTHO05D148646 8.1e-10 69.3 40 72.5
BcaB04g18967 Brassica carinata HOM05D002170 ORTHO05D023792 1.5e-08 65.1 66 53.0
Thhalv10004171m.g Eutrema salsugineum HOM05D004870 ORTHO05D006061 4.2e-06 57.0 157 29.3
THA.LOC104800685 Tarenaya hassleriana HOM05D004870 ORTHO05D006061 7.1e-06 56.2 157 28.7


User provided reference genes

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