Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN07G1901 Fragaria x ananassa HOM05D004662 ORTHO05D005771 1.6e-158 562.8 303 100.0
FvH4_4g12620 Fragaria vesca HOM05D004662 ORTHO05D005771 1.4e-157 559.7 303 99.7
FAN12G2661 Fragaria x ananassa HOM05D004662 ORTHO05D005771 1.4e-157 559.7 303 99.7
FAN17G2854 Fragaria x ananassa HOM05D004662 ORTHO05D005771 1.8e-157 559.3 302 99.7
RcHm_v2.0_Chr4g0411521 Rosa chinensis HOM05D004662 ORTHO05D005771 6.4e-155 550.8 303 97.7
MD12G1216200 Malus domestica HOM05D004662 ORTHO05D005771 2.9e-139 498.8 303 86.8
Prupe.7G048200 Prunus persica HOM05D004662 ORTHO05D005771 2.9e-139 498.8 303 86.8
CsaV3_7G031820 Cucumis sativus L. HOM05D004662 ORTHO05D005771 4.2e-130 468.4 305 83.6
MELO3C023475.2 Cucumis melo HOM05D004662 ORTHO05D005771 1.2e-129 466.8 305 83.3
ClCG01G004580 Citrullus lanatus HOM05D004662 ORTHO05D005771 7.9e-129 464.2 305 83.0
ClCG01G004620 Citrullus lanatus HOM05D004662 ORTHO05D005771 7.9e-129 464.2 305 83.0
CANSAT21G0749 Cannabis sativa HOM05D004662 ORTHO05D005771 1.0e-128 463.8 304 80.9
ClCG09G016740 Citrullus lanatus HOM05D004662 ORTHO05D005771 2.3e-128 462.6 305 82.6
Haze_08022 Corylus avellana HOM05D004662 ORTHO05D005771 8.8e-128 460.7 306 80.7
Actinidia06666 Actinidia chinensis HOM05D004662 ORTHO05D005771 1.5e-127 459.9 302 80.5
Sed0008619 Sechium edule HOM05D004662 ORTHO05D005771 3.3e-127 458.8 305 82.3
Medtr5g095510 Medicago truncatula HOM05D004662 ORTHO05D005771 5.7e-127 458.0 304 78.9
QL09p054497 Quercus lobata HOM05D004662 ORTHO05D005771 5.7e-127 458.0 305 82.3
arahy.Tifrunner.gnm1.ann1.MTS4VB Arachis hypogaea HOM05D004662 ORTHO05D005771 3.7e-126 455.3 300 81.3
HanXRQChr03g0092051 Helianthus annuus HOM05D004662 ORTHO05D005771 3.7e-126 455.3 303 79.9
Ca_07798_v3 Cicer arietinum L. HOM05D004662 ORTHO05D005771 8.2e-126 454.1 304 80.6
Atru.chr10.136 Acer truncatum HOM05D004662 ORTHO05D005771 1.8e-125 453.0 303 79.9
PGR142G0905 Punica granatum HOM05D004662 ORTHO05D005771 1.8e-125 453.0 304 79.6
Ca_05756_v3 Cicer arietinum L. HOM05D004662 ORTHO05D005771 6.9e-125 451.1 304 79.9
Lj3g0018695 Lotus japonicus HOM05D004662 ORTHO05D005771 6.9e-125 451.1 304 77.3
Cfa012638 Carpinus fangiana HOM05D004662 ORTHO05D005771 1.2e-124 450.3 306 79.7
TPR.G8614 Trifolium pratense HOM05D004662 ORTHO05D005771 1.2e-124 450.3 304 79.9
CiPaw.11G076400 Carya illinoinensis HOM05D004662 ORTHO05D005771 4.5e-124 448.4 306 80.1
Eucgr.C00068 Eucalyptus grandis HOM05D004662 ORTHO05D005771 5.9e-124 448.0 304 78.3
TWI75G1338 Tripterygium wilfordii HOM05D004662 ORTHO05D005771 1.7e-123 446.4 304 78.3
Psat2g008160 Pisum sativum HOM05D004662 ORTHO05D005771 2.9e-123 445.7 304 76.6
CSS0002771 Camellia sinensis var. sinensis HOM05D004662 ORTHO05D005771 5.0e-123 444.9 305 80.7
vmacro12830 Vaccinium macrocarpon HOM05D004662 ORTHO05D005771 1.9e-122 443.0 303 79.5
CAN.G112.7 Capsicum annuum HOM05D004662 ORTHO05D005771 2.5e-122 442.6 303 76.6
QL12p002363 Quercus lobata HOM05D004662 ORTHO05D005771 3.2e-122 442.2 305 78.7
SalBow5G3393 Salvia bowleyana HOM05D004662 ORTHO05D005771 5.5e-122 441.4 303 75.6
Gohir.D03G048900 Gossypium hirsutum HOM05D004662 ORTHO05D005771 7.2e-122 441.0 304 79.9
Gorai.003G050200 Gossypium raimondii HOM05D004662 ORTHO05D005771 7.2e-122 441.0 304 79.9
Rhsim10G0141700 Rhododendron simsii HOM05D004662 ORTHO05D005771 7.2e-122 441.0 303 79.5
COL.COLO4_22423 Corchorus olitorius HOM05D004662 ORTHO05D005771 9.4e-122 440.7 304 77.3
Lj4A308T25 Lonicera japonica HOM05D004662 ORTHO05D005771 9.4e-122 440.7 305 77.0
THA.LOC104815455 Tarenaya hassleriana HOM05D004662 ORTHO05D005771 2.1e-121 439.5 303 78.2
Gohir.A02G138300 Gossypium hirsutum HOM05D004662 ORTHO05D005771 4.7e-121 438.3 304 78.9
ECA240G2833 Erigeron canadensis HOM05D004662 ORTHO05D005771 1.4e-120 436.8 304 78.0
Ciclev10016087m.g Citrus clementina HOM05D004662 ORTHO05D005771 1.8e-120 436.4 304 75.7
DCAR_001862 Daucus carota HOM05D004662 ORTHO05D005771 1.8e-120 436.4 303 76.2
Lalb_Chr03g0030851 Lupinus albus HOM05D004662 ORTHO05D005771 1.8e-120 436.4 306 78.8
Lalb_Chr03g0030921 Lupinus albus HOM05D004662 ORTHO05D005771 1.8e-120 436.4 306 78.8
Lalb_Chr03g0030931 Lupinus albus HOM05D004662 ORTHO05D005771 1.8e-120 436.4 306 78.8
Duzib187G0757 Durio zibethinus HOM05D004662 ORTHO05D005771 2.3e-120 436.0 304 78.0
Potri.017G060200 Populus trichocarpa HOM05D004662 ORTHO05D005771 2.3e-120 436.0 305 77.4
Ah.05g168710 Amaranthus hybridus HOM05D004662 ORTHO05D005771 3.9e-120 435.3 303 79.5
PSO210G1432 Papaver somniferum HOM05D004662 ORTHO05D005771 3.9e-120 435.3 303 75.6
DCAR_011479 Daucus carota HOM05D004662 ORTHO05D005771 6.7e-120 434.5 303 75.9
Peaxi162Scf00424g00027 Petunia axillaris HOM05D004662 ORTHO05D005771 6.7e-120 434.5 301 75.4
Sabra17G0054100 Salix brachista HOM05D004662 ORTHO05D005771 6.7e-120 434.5 305 78.0
SGA_v2.0_scaffold137G35115 Striga asiatica HOM05D004662 ORTHO05D005771 6.7e-120 434.5 303 75.6
Dinv09932 Davidia involucrata HOM05D004662 ORTHO05D005771 8.8e-120 434.1 302 78.8
EL10Ac8g20458 Beta vulgaris HOM05D004662 ORTHO05D005771 1.1e-119 433.7 295 79.3
Manes.01G056600 Manihot esculenta HOM05D004662 ORTHO05D005771 1.1e-119 433.7 305 77.0
Nitab4.5_0009675g0010 Nicotiana tabacum HOM05D004662 ORTHO05D005771 1.1e-119 433.7 303 76.2
Thecc.01G121500 Theobroma cacao HOM05D004662 ORTHO05D005771 1.1e-119 433.7 304 77.0
Sc23g0004520 Simmondsia chinensis HOM05D004662 ORTHO05D005771 1.5e-119 433.3 305 78.4
Migut.M00378 Erythranthe guttata HOM05D004662 ORTHO05D005771 2.6e-119 432.6 303 73.9
Glyma.14G078500 Glycine max HOM05D004662 ORTHO05D005771 2.6e-119 432.6 304 77.0
MSTRG.2689 Avicennia marina HOM05D004662 ORTHO05D005771 3.3e-119 432.2 303 76.9
Sopen05g029520 Solanum pennellii HOM05D004662 ORTHO05D005771 3.3e-119 432.2 303 74.9
CDE08G1373 Ceratophyllum demersum HOM05D004662 ORTHO05D005771 4.4e-119 431.8 307 73.3
Glyma.06G234100 Glycine max HOM05D004662 ORTHO05D005771 4.4e-119 431.8 304 78.3
Solyc05g051070.3 Solanum lycopersicum HOM05D004662 ORTHO05D005771 7.4e-119 431.0 301 74.8
PGSC0003DMG400006987 Solanum tuberosum HOM05D004662 ORTHO05D005771 7.4e-119 431.0 303 74.9
Glyma.09G114600 Glycine max HOM05D004662 ORTHO05D005771 9.7e-119 430.6 304 76.0
Nitab4.5_0000777g0160 Nicotiana tabacum HOM05D004662 ORTHO05D005771 9.7e-119 430.6 301 76.1
TAR376G0935 Trochodendron aralioides HOM05D004662 ORTHO05D005771 1.7e-118 429.9 303 78.2
Aqoxy6G00053 Aquilegia oxysepala HOM05D004662 ORTHO05D005771 2.2e-118 429.5 303 77.6
Lsat_1_v5_gn_3_121781 Lactuca sativa HOM05D004662 ORTHO05D005771 4.8e-118 428.3 285 78.6
HPP92_002769 Vanilla planifolia HOM05D004662 ORTHO05D005771 6.3e-118 427.9 304 73.4
Cpa.g.sc42.90 Carica papaya HOM05D004662 ORTHO05D005771 1.8e-117 426.4 303 77.2
Nn5g28723 Nelumbo nucifera HOM05D004662 ORTHO05D005771 1.8e-117 426.4 303 77.2
Cc07_g17380 Coffea canephora HOM05D004662 ORTHO05D005771 4.1e-117 425.2 303 74.6
Aa31LG8G5630 Aethionema arabicum HOM05D004662 ORTHO05D005771 1.2e-116 423.7 306 73.5
GSVIVG01026585001 Vitis vinifera HOM05D004662 ORTHO05D005771 1.6e-116 423.3 303 74.3
ATR0051G034 Amborella trichopoda HOM05D004662 ORTHO05D005771 4.5e-116 421.8 303 74.3
Thhalv10021236m.g Eutrema salsugineum HOM05D004662 ORTHO05D005771 5.9e-116 421.4 303 73.3
Peaxi162Scf00751g00215 Petunia axillaris HOM05D004662 ORTHO05D005771 7.7e-116 421.0 302 72.5
AL3G32170 Arabidopsis lyrata HOM05D004662 ORTHO05D005771 1.9e-114 416.4 303 75.6
Sp3g16880 Schrenkiella parvula HOM05D004662 ORTHO05D005771 3.2e-114 415.6 303 73.9
AUR62014898 Chenopodium quinoa HOM05D004662 ORTHO05D005771 7.2e-114 414.5 303 73.3
Carub.0003s1861 Capsella rubella HOM05D004662 ORTHO05D005771 6.1e-113 411.4 303 74.9
SEGI_04038 Sequoiadendron giganteum HOM05D004662 ORTHO05D005771 8.0e-113 411.0 303 71.3
unitig_699.g19713 Utricularia gibba HOM05D004662 ORTHO05D005771 8.0e-113 411.0 303 71.9
TAR628G0746 Trochodendron aralioides HOM05D004662 ORTHO05D005771 1.0e-112 410.6 303 73.9
AT3G18790 Arabidopsis thaliana HOM05D004662 ORTHO05D005771 1.4e-112 410.2 303 74.6
AUR62031104 Chenopodium quinoa HOM05D004662 ORTHO05D005771 3.0e-112 409.1 295 73.9
ATR0772G105 Amborella trichopoda HOM05D004662 ORTHO05D005771 8.8e-112 407.5 303 71.6
CARHR094200 Cardamine hirsuta HOM05D004662 ORTHO05D005771 1.5e-111 406.8 303 72.6
SHI06523 Sapria himalayana HOM05D004662 ORTHO05D005771 2.6e-111 406.0 303 73.6
Lalb_Chr01g0006671 Lupinus albus HOM05D004662 ORTHO05D005771 9.7e-111 404.1 303 73.9
Phvul.006G049400 Phaseolus vulgaris HOM05D004662 ORTHO05D005771 2.2e-110 402.9 304 74.0
Phvul.008G233000 Phaseolus vulgaris HOM05D004662 ORTHO05D005771 2.8e-110 402.5 304 73.7
BraA05t21923Z Brassica rapa HOM05D004662 ORTHO05D005771 3.7e-110 402.1 303 71.0
A05p30810 Brassica napus HOM05D004662 ORTHO05D005771 4.8e-110 401.7 303 70.6
BcaC05g28571 Brassica carinata HOM05D004662 ORTHO05D005771 4.1e-109 398.7 303 71.0
C05p46730 Brassica napus HOM05D004662 ORTHO05D005771 4.1e-109 398.7 303 71.0
BolC5t33400H Brassica oleracea HOM05D004662 ORTHO05D005771 4.1e-109 398.7 303 71.0
BcaB04g20746 Brassica carinata HOM05D004662 ORTHO05D005771 4.5e-108 395.2 304 70.1
BcaB06g25932 Brassica carinata HOM05D004662 ORTHO05D005771 4.5e-108 395.2 304 69.4
Zm00001eb246450 Zea mays HOM05D004662 ORTHO05D005771 1.9e-106 389.8 312 69.2
Hma1.2p1_0006F.1_g004870 Hydrangea macrophylla HOM05D004662 ORTHO05D005771 2.5e-106 389.4 300 72.0
MBI17_g31489_MAGBIO Magnolia biondii HOM05D004662 ORTHO05D005771 5.5e-106 388.3 305 67.9
Mapoly0026s0083 Marchantia polymorpha HOM05D004662 ORTHO05D005771 3.4e-103 379.0 303 66.0
Prupe.6G322400 Prunus persica HOM05D004662 ORTHO05D005771 1.1e-101 374.0 292 72.3
Gohir.A03G042500 Gossypium hirsutum HOM05D004662 ORTHO05D005771 1.8e-101 373.2 282 75.2
AagrBONN_evm.TU.Sc2ySwM_368.1726 Anthoceros agrestis HOM05D004662 ORTHO05D005771 3.1e-101 372.5 302 66.6
Pp3c13_15060 Physcomitrium patens HOM05D004662 ORTHO05D005771 6.1e-97 358.2 303 62.7
C01p45240 Brassica napus HOM05D004662 ORTHO05D005771 3.4e-95 352.4 303 66.0
CBR_g84973 Chara braunii HOM05D004662 ORTHO05D005771 2.8e-94 349.4 323 59.1
SMO274G0029 Selaginella moellendorffii HOM05D004662 ORTHO05D005771 1.9e-90 336.7 304 57.9
Peaxi162Scf00134g00137 Petunia axillaris HOM05D004662 ORTHO05D005771 3.0e-83 312.8 195 77.9
Sc23g0004080 Simmondsia chinensis HOM05D004662 ORTHO05D005771 1.4e-80 303.9 253 68.4
COL.COLO4_10520 Corchorus olitorius HOM05D004662 ORTHO05D005771 5.8e-79 298.5 193 79.3
SMO134G0084 Selaginella moellendorffii HOM05D004662 ORTHO05D005771 2.2e-78 296.6 304 53.3
Cre10.g427150 Chlamydomonas reinhardtii HOM05D004662 ORTHO05D005771 8.3e-78 294.7 301 55.1
BcaC09g48849 Brassica carinata HOM05D004662 ORTHO05D005771 1.7e-75 287.0 253 64.0
Dinv15114 Davidia involucrata HOM05D004662 ORTHO05D005771 6.4e-70 268.5 303 55.4
MCO03G092 Micromonas commoda HOM05D004662 ORTHO05D005771 5.1e-67 258.8 300 53.3
Hma1.2p1_0006F.1_g004860 Hydrangea macrophylla HOM05D004662 ORTHO05D005771 2.0e-63 246.9 134 89.6
vmacro12447 Vaccinium macrocarpon HOM05D004662 ORTHO05D005771 1.2e-60 237.7 199 67.8
Os02g0602500 Oryza sativa ssp. japonica HOM05D004662 ORTHO05D005771 4.7e-57 225.7 212 61.3
Sc23g0003810 Simmondsia chinensis HOM05D004662 ORTHO05D005771 5.2e-56 222.2 274 52.9
VMungo1309G1891 Vigna mungo HOM05D004662 ORTHO05D005771 4.9e-54 215.7 193 66.8
PRCOL_00003362 Prasinoderma coloniale HOM05D004662 ORTHO05D005771 5.1e-51 205.7 303 45.9
Sc23g0004530 Simmondsia chinensis HOM05D004662 ORTHO05D005771 1.4e-45 187.6 167 68.9
CAN.G184.48 Capsicum annuum HOM05D004662 ORTHO05D005771 8.7e-43 178.3 295 41.4
Gorai.003G131300 Gossypium raimondii HOM05D004662 ORTHO05D005771 2.1e-41 173.7 194 55.2
Dinv05182 Davidia involucrata HOM05D004662 ORTHO05D005771 1.8e-40 170.6 231 47.6
Gohir.D03G125150 Gossypium hirsutum HOM05D004662 ORTHO05D005771 3.4e-39 166.4 194 53.1
Haze_26219 Corylus avellana HOM05D004662 ORTHO05D005771 9.9e-39 164.9 197 48.7
Atru.chr9.1310 Acer truncatum HOM05D004662 ORTHO05D005771 1.1e-37 161.4 110 77.3
Zm00001eb267310 Zea mays HOM05D004662 ORTHO05D005771 9.3e-37 158.3 104 74.0
VMungo1309G1313 Vigna mungo HOM05D004662 ORTHO05D005771 1.4e-32 144.4 182 47.8
Zm00001eb424510 Zea mays HOM05D004662 ORTHO05D005771 1.4e-29 134.4 83 75.9
Sabra16G0204000 Salix brachista HOM05D004662 ORTHO05D005771 1.8e-24 117.5 260 39.6
Zm00001eb116840 Zea mays HOM05D004662 ORTHO05D441867 4.2e-21 106.3 58 84.5
Zm00001eb143820 Zea mays HOM05D004662 ORTHO05D005771 2.7e-20 103.6 58 81.0
Zm00001eb040030 Zea mays HOM05D000558 ORTHO05D003075 6.1e-20 102.4 61 77.0
COL.COLO4_20103 Corchorus olitorius HOM05D000161 ORTHO05D000111 8.8e-19 98.6 153 47.1
A01p35650 Brassica napus HOM05D004662 ORTHO05D005771 1.1e-18 98.2 303 31.4
BraA01t03647Z Brassica rapa HOM05D004662 ORTHO05D005771 7.4e-18 95.5 303 31.0
Zm00001eb162730 Zea mays HOM05D000558 ORTHO05D003075 1.3e-17 94.7 64 70.3
VMungo0540G2311 Vigna mungo HOM05D004662 ORTHO05D005771 2.2e-14 84.0 117 53.0
VMungo1309G1979 Vigna mungo HOM05D004662 ORTHO05D005771 9.4e-13 78.6 117 51.3
VMungo1127G1535 Vigna mungo HOM05D004662 ORTHO05D005771 1.0e-11 75.1 67 62.7
COL.COLO4_03460 Corchorus olitorius HOM05D004662 ORTHO05D157366 1.2e-07 61.6 129 41.9
CAN.G1058.32 Capsicum annuum HOM05D004662 ORTHO05D005771 2.0e-07 60.8 65 58.5
VMungo0720G0221 Vigna mungo HOM05D004662 ORTHO05D005771 2.0e-07 60.8 97 42.3
BolC1t04500H Brassica oleracea HOM05D004662 ORTHO05D005771 8.5e-06 55.5 78 42.3


User provided reference genes

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