Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN07G1552 Fragaria x ananassa HOM05D004008 ORTHO05D005383 5.7e-206 720.7 365 100.0
FAN12G0417 Fragaria x ananassa HOM05D004008 ORTHO05D005383 2.7e-200 701.8 365 97.3
RcHm_v2.0_Chr4g0446801 Rosa chinensis HOM05D004008 ORTHO05D005383 1.2e-187 659.8 368 92.7
FvH4_7g04700 Fragaria vesca HOM05D004008 ORTHO05D005383 4.7e-176 621.3 365 88.8
FAN10G2193 Fragaria x ananassa HOM05D004008 ORTHO05D005383 4.7e-176 621.3 365 88.8
RcHm_v2.0_Chr1g0330101 Rosa chinensis HOM05D004008 ORTHO05D005383 6.1e-176 620.9 365 88.5
FAN03G0704 Fragaria x ananassa HOM05D004008 ORTHO05D005383 5.3e-172 607.8 359 88.3
FAN06G1123 Fragaria x ananassa HOM05D004008 ORTHO05D005383 1.0e-170 603.6 365 87.1
FAN06G2867 Fragaria x ananassa HOM05D004008 ORTHO05D005383 1.0e-170 603.6 365 87.1
FAN17G0554 Fragaria x ananassa HOM05D004008 ORTHO05D005383 2.3e-167 592.4 303 99.0
Prupe.1G348400 Prunus persica HOM05D004008 ORTHO05D005383 1.8e-164 582.8 367 82.8
MD13G1004100 Malus domestica HOM05D004008 ORTHO05D005383 2.0e-163 579.3 370 81.9
MD16G1003400 Malus domestica HOM05D004008 ORTHO05D005383 2.7e-163 578.9 370 81.9
CANSAT78G1304 Cannabis sativa HOM05D004008 ORTHO05D005383 3.6e-160 568.5 362 80.4
Manes.11G103000 Manihot esculenta HOM05D004008 ORTHO05D005383 3.7e-157 558.5 353 81.6
Potri.007G072500 Populus trichocarpa HOM05D004008 ORTHO05D005383 4.9e-157 558.1 360 80.0
COL.COLO4_33043 Corchorus olitorius HOM05D004008 ORTHO05D005383 2.4e-156 555.8 372 77.7
Cfa008746 Carpinus fangiana HOM05D004008 ORTHO05D005383 1.2e-155 553.5 365 78.9
Gohir.A03G165100 Gossypium hirsutum HOM05D004008 ORTHO05D005383 1.2e-155 553.5 357 79.0
Haze_11762 Corylus avellana HOM05D004008 ORTHO05D005383 1.6e-155 553.1 365 78.6
Gohir.D02G188300 Gossypium hirsutum HOM05D004008 ORTHO05D005383 1.6e-155 553.1 357 78.7
Potri.005G091600 Populus trichocarpa HOM05D004008 ORTHO05D005383 3.5e-155 552.0 360 78.6
Actinidia12791 Actinidia chinensis HOM05D004008 ORTHO05D005383 1.0e-154 550.4 352 79.0
Gorai.005G211000 Gossypium raimondii HOM05D004008 ORTHO05D005383 1.3e-154 550.1 357 78.4
Thecc.02G158900 Theobroma cacao HOM05D004008 ORTHO05D005383 3.9e-154 548.5 357 78.7
TPR.G11683 Trifolium pratense HOM05D004008 ORTHO05D005383 1.9e-153 546.2 362 78.2
Cpa.g.sc43.43 Carica papaya HOM05D004008 ORTHO05D005383 2.5e-153 545.8 358 79.1
Cc05_g16090 Coffea canephora HOM05D004008 ORTHO05D005383 3.3e-153 545.4 358 78.8
Psat7g172760 Pisum sativum HOM05D004008 ORTHO05D005383 3.3e-153 545.4 362 78.5
Medtr4g076600 Medicago truncatula HOM05D004008 ORTHO05D005383 4.3e-153 545.0 323 84.8
LjContig00222g0009052 Lotus japonicus HOM05D004008 ORTHO05D005383 5.6e-153 544.7 321 86.0
THA.LOC104800860 Tarenaya hassleriana HOM05D004008 ORTHO05D005383 5.6e-153 544.7 362 78.5
TWI75G1091 Tripterygium wilfordii HOM05D004008 ORTHO05D005383 5.6e-153 544.7 361 78.1
Ciclev10031858m.g Citrus clementina HOM05D004008 ORTHO05D005383 7.3e-153 544.3 352 78.1
Eucgr.C00142 Eucalyptus grandis HOM05D004008 ORTHO05D005383 7.3e-153 544.3 360 78.3
PGSC0003DMG400022126 Solanum tuberosum HOM05D004008 ORTHO05D005383 7.3e-153 544.3 350 79.1
arahy.Tifrunner.gnm1.ann1.416KLQ Arachis hypogaea HOM05D004008 ORTHO05D005383 1.2e-152 543.5 342 80.4
Glyma.01G227400 Glycine max HOM05D004008 ORTHO05D005383 1.2e-152 543.5 323 84.8
GSVIVG01002505001 Vitis vinifera HOM05D004008 ORTHO05D005383 2.8e-152 542.3 328 82.9
arahy.Tifrunner.gnm1.ann1.KXDS8S Arachis hypogaea HOM05D004008 ORTHO05D005383 3.6e-152 542.0 339 81.1
Duzib132G0865 Durio zibethinus HOM05D004008 ORTHO05D005383 3.6e-152 542.0 357 77.0
Glyma.11G094700 Glycine max HOM05D004008 ORTHO05D005383 3.6e-152 542.0 334 82.6
Ca_26057_v3 Cicer arietinum L. HOM05D004008 ORTHO05D005383 6.1e-152 541.2 349 79.7
Lsat_1_v5_gn_7_112100 Lactuca sativa HOM05D004008 ORTHO05D005383 6.1e-152 541.2 348 79.9
Glyma.12G021100 Glycine max HOM05D004008 ORTHO05D005383 8.0e-152 540.8 347 80.4
Sopen07g034650 Solanum pennellii HOM05D004008 ORTHO05D005383 1.0e-151 540.4 350 78.6
Gorai.012G134300 Gossypium raimondii HOM05D004008 ORTHO05D005383 1.8e-151 539.7 351 78.3
Solyc07g066470.3 Solanum lycopersicum HOM05D004008 ORTHO05D005383 2.3e-151 539.3 350 78.3
QL12p007515 Quercus lobata HOM05D004008 ORTHO05D005383 3.1e-151 538.9 363 77.7
Sp6g34680 Schrenkiella parvula HOM05D004008 ORTHO05D005383 3.1e-151 538.9 363 77.4
CAN.G943.40 Capsicum annuum HOM05D004008 ORTHO05D005383 6.8e-151 537.7 345 78.8
Dinv19616 Davidia involucrata HOM05D004008 ORTHO05D005383 6.8e-151 537.7 366 77.0
AL6G18680 Arabidopsis lyrata HOM05D004008 ORTHO05D005383 1.2e-150 537.0 363 76.3
Hma1.2p1_0334F.1_g128730 Hydrangea macrophylla HOM05D004008 ORTHO05D005383 2.0e-150 536.2 356 77.2
Aa31LG3G18290 Aethionema arabicum HOM05D004008 ORTHO05D005383 2.6e-150 535.8 362 76.0
CSS0024885 Camellia sinensis var. sinensis HOM05D004008 ORTHO05D005383 2.6e-150 535.8 344 80.2
CsaV3_3G031800 Cucumis sativus L. HOM05D004008 ORTHO05D005383 2.6e-150 535.8 353 77.6
arahy.Tifrunner.gnm1.ann1.6Z73IP Arachis hypogaea HOM05D004008 ORTHO05D005383 3.4e-150 535.4 333 80.8
A10p28400 Brassica napus HOM05D004008 ORTHO05D005383 3.4e-150 535.4 363 76.9
BraA10t44887Z Brassica rapa HOM05D004008 ORTHO05D005383 3.4e-150 535.4 363 76.9
Hma1.2p1_0637F.1_g193530 Hydrangea macrophylla HOM05D004008 ORTHO05D005383 3.4e-150 535.4 327 82.3
BcaB01g05618 Brassica carinata HOM05D004008 ORTHO05D005383 4.4e-150 535.0 363 76.0
BolC3t12952H Brassica oleracea HOM05D004008 ORTHO05D005383 4.4e-150 535.0 363 76.0
SalBow8G2118 Salvia bowleyana HOM05D004008 ORTHO05D005383 4.4e-150 535.0 354 78.0
AT5G08280 Arabidopsis thaliana HOM05D004008 ORTHO05D005383 5.8e-150 534.6 363 76.3
Dinv42507 Davidia involucrata HOM05D004008 ORTHO05D005383 5.8e-150 534.6 351 78.1
TWI12G0055 Tripterygium wilfordii HOM05D004008 ORTHO05D005383 5.8e-150 534.6 363 77.1
VMungo1215G1012 Vigna mungo HOM05D004008 ORTHO05D005383 5.8e-150 534.6 338 80.8
Thhalv10013814m.g Eutrema salsugineum HOM05D004008 ORTHO05D005383 7.5e-150 534.3 363 76.9
Carub.0006s0716 Capsella rubella HOM05D004008 ORTHO05D005383 9.8e-150 533.9 363 75.8
CiPaw.01G129500 Carya illinoinensis HOM05D004008 ORTHO05D005383 9.8e-150 533.9 339 81.4
Sed0006741 Sechium edule HOM05D004008 ORTHO05D005383 9.8e-150 533.9 360 77.8
Lalb_Chr09g0320431 Lupinus albus HOM05D004008 ORTHO05D005383 1.7e-149 533.1 325 83.1
Peaxi162Scf00452g00831 Petunia axillaris HOM05D004008 ORTHO05D005383 1.7e-149 533.1 350 77.4
Phvul.011G177100 Phaseolus vulgaris HOM05D004008 ORTHO05D005383 2.9e-149 532.3 350 78.0
Rhsim06G0054400 Rhododendron simsii HOM05D004008 ORTHO05D005383 2.9e-149 532.3 343 80.5
A03p03710 Brassica napus HOM05D004008 ORTHO05D005383 4.9e-149 531.6 363 76.3
BraA03t09719Z Brassica rapa HOM05D004008 ORTHO05D005383 4.9e-149 531.6 363 76.3
CARHR204850 Cardamine hirsuta HOM05D004008 ORTHO05D005383 4.9e-149 531.6 359 76.6
PGR142G0362 Punica granatum HOM05D004008 ORTHO05D005383 4.9e-149 531.6 351 77.2
Duzib248G1235 Durio zibethinus HOM05D004008 ORTHO05D005383 6.4e-149 531.2 356 76.1
MSTRG.14544 Avicennia marina HOM05D004008 ORTHO05D005383 8.3e-149 530.8 349 77.1
BolC9t59612H Brassica oleracea HOM05D004008 ORTHO05D005383 8.3e-149 530.8 363 76.3
Migut.M01552 Erythranthe guttata HOM05D004008 ORTHO05D005383 1.1e-148 530.4 368 74.5
ClCG10G012060 Citrullus lanatus HOM05D004008 ORTHO05D005383 1.9e-148 529.6 340 80.0
C09p68660 Brassica napus HOM05D004008 ORTHO05D005383 2.4e-148 529.3 363 76.0
HanXRQChr01g0007731 Helianthus annuus HOM05D004008 ORTHO05D005383 2.4e-148 529.3 351 76.9
Oeu052004.1 Olea europaea HOM05D004008 ORTHO05D005383 2.4e-148 529.3 348 77.6
TAR626G0539 Trochodendron aralioides HOM05D004008 ORTHO05D005383 2.4e-148 529.3 353 76.8
TAR626G1776 Trochodendron aralioides HOM05D004008 ORTHO05D005383 2.4e-148 529.3 353 76.8
C03p04200 Brassica napus HOM05D004008 ORTHO05D005383 3.2e-148 528.9 363 75.2
C02p03470 Brassica napus HOM05D004008 ORTHO05D005383 4.1e-148 528.5 363 75.8
Nitab4.5_0001791g0020 Nicotiana tabacum HOM05D004008 ORTHO05D005383 7.0e-148 527.7 339 80.2
Phvul.002G034500 Phaseolus vulgaris HOM05D004008 ORTHO05D005383 7.0e-148 527.7 321 82.6
BcaNung05097 Brassica carinata HOM05D004008 ORTHO05D005383 1.6e-147 526.6 352 76.4
BraA02t04947Z Brassica rapa HOM05D004008 ORTHO05D005383 2.7e-147 525.8 325 81.5
Nitab4.5_0000134g0020 Nicotiana tabacum HOM05D004008 ORTHO05D005383 2.7e-147 525.8 347 79.3
Peaxi162Scf00006g00139 Petunia axillaris HOM05D004008 ORTHO05D005383 2.7e-147 525.8 360 76.4
VMungo1127G2017 Vigna mungo HOM05D004008 ORTHO05D005383 3.5e-147 525.4 333 79.6
MSTRG.13067 Avicennia marina HOM05D004008 ORTHO05D005383 4.6e-147 525.0 364 74.5
Lj1A905T43 Lonicera japonica HOM05D004008 ORTHO05D005383 6.0e-147 524.6 351 77.5
Sc10g0004580 Simmondsia chinensis HOM05D004008 ORTHO05D005383 7.8e-147 524.2 337 78.6
Ah.10g029970 Amaranthus hybridus HOM05D004008 ORTHO05D005383 2.3e-146 522.7 332 78.9
BolC2t06308H Brassica oleracea HOM05D004008 ORTHO05D005383 2.3e-146 522.7 325 81.2
HanXRQChr05g0153591 Helianthus annuus HOM05D004008 ORTHO05D005383 2.3e-146 522.7 323 83.0
Sabra07G0061100 Salix brachista HOM05D004008 ORTHO05D005383 1.9e-145 519.6 435 65.5
Nitab4.5_0001749g0010 Nicotiana tabacum HOM05D004008 ORTHO05D005383 3.3e-145 518.8 352 75.0
ECA248G2166 Erigeron canadensis HOM05D004008 ORTHO05D005383 9.5e-145 517.3 316 83.2
Gohir.A04G108500 Gossypium hirsutum HOM05D004008 ORTHO05D005383 9.5e-145 517.3 333 79.6
SGA_v2.0_scaffold186G40215 Striga asiatica HOM05D004008 ORTHO05D005383 1.6e-144 516.5 370 72.4
Migut.H01689 Erythranthe guttata HOM05D004008 ORTHO05D005383 2.1e-144 516.2 351 74.9
unitig_21.g20251 Utricularia gibba HOM05D004008 ORTHO05D005383 3.6e-144 515.4 323 79.6
ATR0763G059 Amborella trichopoda HOM05D004008 ORTHO05D005383 1.1e-143 513.8 360 74.2
Sabra05G0076100 Salix brachista HOM05D004008 ORTHO05D005383 1.8e-143 513.1 424 66.0
Aqoxy6G00207 Aquilegia oxysepala HOM05D004008 ORTHO05D005383 3.1e-143 512.3 332 79.5
CDE05G3126 Ceratophyllum demersum HOM05D004008 ORTHO05D005383 6.8e-143 511.1 355 74.6
MBI18_g03839_MAGBIO Magnolia biondii HOM05D004008 ORTHO05D005383 6.8e-143 511.1 368 74.5
EL10Ac2g02758 Beta vulgaris HOM05D004008 ORTHO05D005383 2.0e-142 509.6 331 76.4
FvH4_4g37020 Fragaria vesca HOM05D004008 ORTHO05D005383 2.0e-142 509.6 268 97.4
PSO541G2232 Papaver somniferum HOM05D004008 ORTHO05D005383 2.0e-142 509.6 349 74.5
CDE11G0020 Ceratophyllum demersum HOM05D004008 ORTHO05D005383 5.8e-142 508.1 355 74.1
PSO675G0755 Papaver somniferum HOM05D004008 ORTHO05D005383 7.5e-142 507.7 349 74.2
Hund13394 Selenicereus undatus HOM05D004008 ORTHO05D005383 7.5e-142 507.7 331 77.3
vmacro11667 Vaccinium macrocarpon HOM05D004008 ORTHO05D005383 7.5e-142 507.7 429 65.0
HPP92_002271 Vanilla planifolia HOM05D004008 ORTHO05D005383 3.7e-141 505.4 359 72.4
AUR62032620 Chenopodium quinoa HOM05D004008 ORTHO05D005383 1.4e-140 503.4 356 72.5
CDE02G2123 Ceratophyllum demersum HOM05D004008 ORTHO05D005383 7.1e-140 501.1 323 78.6
AUR62031735 Chenopodium quinoa HOM05D004008 ORTHO05D005383 7.1e-140 501.1 351 72.6
CSS0025050 Camellia sinensis var. sinensis HOM05D004008 ORTHO05D005383 9.2e-140 500.7 343 76.4
Nitab4.5_0001080g0030 Nicotiana tabacum HOM05D004008 ORTHO05D005383 1.2e-139 500.4 387 68.0
Lj4g0025599 Lotus japonicus HOM05D004008 ORTHO05D005383 6.6e-138 494.6 343 75.2
SGA_v2.0_scaffold7G03592 Striga asiatica HOM05D004008 ORTHO05D005383 8.6e-138 494.2 353 73.4
Gohir.D04G148100 Gossypium hirsutum HOM05D004008 ORTHO05D005383 1.5e-137 493.4 284 86.6
MELO3C024010.2 Cucumis melo HOM05D004008 ORTHO05D005383 1.2e-136 490.3 284 86.3
BcaB08g37268 Brassica carinata HOM05D004008 ORTHO05D005383 3.1e-135 485.7 363 71.1
Os02g0168800 Oryza sativa ssp. japonica HOM05D004008 ORTHO05D005383 3.4e-134 482.3 330 74.2
Zm00001eb207370 Zea mays HOM05D004008 ORTHO05D005383 4.4e-134 481.9 330 73.3
DCAR_013737 Daucus carota HOM05D004008 ORTHO05D005383 2.7e-131 472.6 307 80.5
BcaC03g13214 Brassica carinata HOM05D004008 ORTHO05D005383 7.8e-131 471.1 325 75.1
Pp3c6_15990 Physcomitrium patens HOM05D004008 ORTHO05D005383 1.3e-130 470.3 332 72.0
Pp3c15_6300 Physcomitrium patens HOM05D004008 ORTHO05D005383 6.6e-130 468.0 331 71.3
SEGI_21965 Sequoiadendron giganteum HOM05D004008 ORTHO05D005383 4.3e-129 465.3 301 77.7
Mapoly0015s0060 Marchantia polymorpha HOM05D004008 ORTHO05D005383 5.6e-129 464.9 324 71.3
Pp3c5_16770 Physcomitrium patens HOM05D004008 ORTHO05D005383 7.3e-129 464.5 329 70.8
CBR_g48425 Chara braunii HOM05D004008 ORTHO05D005383 3.1e-127 459.1 323 71.5
Zm00001eb233020 Zea mays HOM05D004008 ORTHO05D005383 2.0e-126 456.4 299 75.3
SMO364G0819 Selaginella moellendorffii HOM05D004008 ORTHO05D005383 7.6e-126 454.5 323 73.4
TAR624G0715 Trochodendron aralioides HOM05D004008 ORTHO05D005383 3.2e-124 449.1 306 76.5
Cre16.g663900 Chlamydomonas reinhardtii HOM05D004008 ORTHO05D005383 1.5e-113 413.7 303 69.3
MCO01G747 Micromonas commoda HOM05D004008 ORTHO05D005383 1.3e-109 400.6 324 64.5
Sed0020742 Sechium edule HOM05D004008 ORTHO05D005383 2.5e-105 386.3 250 79.6
Oeu001944.1 Olea europaea HOM05D004008 ORTHO05D005383 1.5e-102 377.1 247 80.2
PRCOL_00005560 Prasinoderma coloniale HOM05D004008 ORTHO05D005383 3.3e-97 359.4 289 63.7
AagrBONN_evm.TU.Sc2ySwM_117.3714 Anthoceros agrestis HOM05D004008 ORTHO05D005383 2.9e-93 346.3 229 76.4
Psat5g025240 Pisum sativum HOM05D004008 ORTHO05D005383 1.2e-78 297.7 309 57.6
arahy.Tifrunner.gnm1.ann1.VI50KN Arachis hypogaea HOM05D004008 ORTHO05D005383 2.0e-70 270.4 174 79.3
Nn7g38125 Nelumbo nucifera HOM05D004008 ORTHO05D005383 2.9e-69 266.5 189 73.0
Haze_26918 Corylus avellana HOM05D004008 ORTHO05D163716 2.3e-66 256.9 308 49.0
Actinidia07354 Actinidia chinensis HOM05D004008 ORTHO05D005383 1.0e-61 241.5 355 45.1
Glyma.11G015433 Glycine max HOM05D004008 ORTHO05D005383 2.4e-47 193.7 112 83.0
Psat5g278360 Pisum sativum HOM05D004008 ORTHO05D000002 5.0e-45 186.0 113 81.4
BcaC07g39332 Brassica carinata HOM05D004008 ORTHO05D032875 5.2e-42 176.0 172 60.5
C08p23470 Brassica napus HOM05D004008 ORTHO05D032875 5.2e-42 176.0 172 60.5
BolC8t49976H Brassica oleracea HOM05D004008 ORTHO05D032875 5.2e-42 176.0 172 60.5
Cre02.g113850 Chlamydomonas reinhardtii HOM05D004008 ORTHO05D145669 1.2e-35 154.8 323 34.1
BcaC08g43816 Brassica carinata HOM05D004008 ORTHO05D013026 3.2e-31 140.2 102 65.7
BcaC04g20718 Brassica carinata HOM05D004008 ORTHO05D027220 7.0e-31 139.0 108 63.0
C09p39940 Brassica napus HOM05D004008 ORTHO05D027220 7.0e-31 139.0 108 63.0
C03p57930 Brassica napus HOM05D004008 ORTHO05D027220 4.6e-30 136.3 108 62.0
C02p56520 Brassica napus HOM05D000109 ORTHO05D000210 3.0e-29 133.7 106 61.3
BolC9t56891H Brassica oleracea HOM05D004008 ORTHO05D013026 3.9e-29 133.3 112 58.9
BcaC03g17816 Brassica carinata HOM05D003055 ORTHO05D013026 4.3e-28 129.8 113 55.8
C02p58390 Brassica napus HOM05D003055 ORTHO05D013026 6.2e-27 125.9 112 55.4
BolC3t18065H Brassica oleracea HOM05D003055 ORTHO05D013026 3.1e-18 97.1 72 65.3
TPR.G13755 Trifolium pratense HOM05D004008 ORTHO05D410752 3.4e-17 93.6 67 74.6
Psat6g163360 Pisum sativum HOM05D005575 ORTHO05D000484 4.9e-16 89.7 49 89.8
Rhsim06G0151600 Rhododendron simsii HOM05D001371 ORTHO05D001319 1.1e-15 88.6 61 78.7
C05p24790 Brassica napus HOM05D003055 ORTHO05D013026 4.2e-07 60.1 36 66.7
BcaC01g02956 Brassica carinata HOM05D003055 ORTHO05D013026 4.6e-06 56.6 36 63.9


User provided reference genes

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