Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN07G1521 Fragaria x ananassa HOM05D004663 ORTHO05D006325 5.1e-193 677.6 339 100.0
FvH4_4g36650 Fragaria vesca HOM05D004663 ORTHO05D006325 2.2e-183 645.6 338 95.3
FAN12G1833 Fragaria x ananassa HOM05D004663 ORTHO05D006325 1.0e-180 636.7 339 94.4
RcHm_v2.0_Chr4g0446361 Rosa chinensis HOM05D004663 ORTHO05D006325 6.5e-164 580.9 343 87.8
Prupe.1G344500 Prunus persica HOM05D004663 ORTHO05D006325 3.5e-133 478.8 345 73.3
MD16G1006100 Malus domestica HOM05D004663 ORTHO05D006325 3.3e-131 472.2 348 73.6
Thecc.02G295300 Theobroma cacao HOM05D004663 ORTHO05D006325 9.2e-118 427.6 287 76.3
Atru.chr11.1191 Acer truncatum HOM05D004663 ORTHO05D006325 1.2e-112 410.6 296 70.6
Atru.chr11.1197 Acer truncatum HOM05D004663 ORTHO05D006325 1.2e-112 410.6 296 70.6
Cfa008725 Carpinus fangiana HOM05D004663 ORTHO05D006325 1.5e-112 410.2 306 69.0
Glyma.12G028400 Glycine max HOM05D004663 ORTHO05D006325 9.9e-112 407.5 288 71.9
TWI74G1669 Tripterygium wilfordii HOM05D004663 ORTHO05D006325 1.3e-111 407.1 286 72.4
Phvul.011G031800 Phaseolus vulgaris HOM05D004663 ORTHO05D006325 2.9e-111 406.0 282 72.3
Nn4g24912 Nelumbo nucifera HOM05D004663 ORTHO05D006325 3.7e-111 405.6 297 69.4
Hund24313 Selenicereus undatus HOM05D004663 ORTHO05D006325 8.3e-111 404.4 328 63.4
ClCG11G001190 Citrullus lanatus HOM05D004663 ORTHO05D006325 1.4e-110 403.7 293 71.0
GSVIVG01010186001 Vitis vinifera HOM05D004663 ORTHO05D006325 1.9e-110 403.3 247 78.9
Duzib251G0299 Durio zibethinus HOM05D004663 ORTHO05D006325 3.2e-110 402.5 291 71.8
Lj3g0017139 Lotus japonicus HOM05D004663 ORTHO05D006325 3.2e-110 402.5 289 72.7
VMungo1127G1383 Vigna mungo HOM05D004663 ORTHO05D006325 3.2e-110 402.5 284 70.8
Manes.03G082300 Manihot esculenta HOM05D004663 ORTHO05D006325 4.1e-110 402.1 296 69.6
arahy.Tifrunner.gnm1.ann1.W91FXI Arachis hypogaea HOM05D004663 ORTHO05D006325 9.2e-110 401.0 290 70.7
arahy.Tifrunner.gnm1.ann1.NK7YGL Arachis hypogaea HOM05D004663 ORTHO05D006325 2.1e-109 399.8 290 70.7
Gohir.A12G152600 Gossypium hirsutum HOM05D004663 ORTHO05D006325 7.8e-109 397.9 282 71.3
COL.COLO4_16617 Corchorus olitorius HOM05D004663 ORTHO05D006325 1.0e-108 397.5 328 64.3
Sed0002621 Sechium edule HOM05D004663 ORTHO05D006325 2.3e-108 396.4 292 69.9
Potri.010G169600 Populus trichocarpa HOM05D004663 ORTHO05D006325 5.1e-108 395.2 293 68.6
Migut.L00857 Erythranthe guttata HOM05D004663 ORTHO05D006325 8.6e-108 394.4 293 67.9
Haze_11737 Corylus avellana HOM05D004663 ORTHO05D006325 1.9e-107 393.3 327 63.9
Gorai.008G168600 Gossypium raimondii HOM05D004663 ORTHO05D006325 1.9e-107 393.3 281 70.8
Sc10g0005860 Simmondsia chinensis HOM05D004663 ORTHO05D006325 2.5e-107 392.9 296 68.9
TAR628G1419 Trochodendron aralioides HOM05D004663 ORTHO05D006325 2.5e-107 392.9 301 68.1
Eucgr.J00843 Eucalyptus grandis HOM05D004663 ORTHO05D006325 3.3e-107 392.5 306 67.6
Gohir.D12G156000 Gossypium hirsutum HOM05D004663 ORTHO05D006325 4.3e-107 392.1 281 70.5
Nitab4.5_0002192g0110 Nicotiana tabacum HOM05D004663 ORTHO05D006325 4.3e-107 392.1 312 65.4
PGSC0003DMG400019834 Solanum tuberosum HOM05D004663 ORTHO05D006325 7.3e-107 391.3 302 68.2
Hma1.2p1_0499F.1_g166870 Hydrangea macrophylla HOM05D004663 ORTHO05D006325 9.5e-107 391.0 321 65.1
CsaV3_5G013250 Cucumis sativus L. HOM05D004663 ORTHO05D006325 1.2e-106 390.6 291 69.8
SGA_v2.0_scaffold258G45746 Striga asiatica HOM05D004663 ORTHO05D006325 4.7e-106 388.7 271 71.2
CiPaw.06G057700 Carya illinoinensis HOM05D004663 ORTHO05D006325 6.2e-106 388.3 309 64.4
Cc11_g05100 Coffea canephora HOM05D004663 ORTHO05D006325 6.2e-106 388.3 318 63.8
CANSAT35G0206 Cannabis sativa HOM05D004663 ORTHO05D006325 8.1e-106 387.9 291 68.7
CSS0001950 Camellia sinensis var. sinensis HOM05D004663 ORTHO05D006325 3.1e-105 386.0 314 63.7
Actinidia13293 Actinidia chinensis HOM05D004663 ORTHO05D006325 4.0e-105 385.6 286 69.9
Ca_03037_v3 Cicer arietinum L. HOM05D004663 ORTHO05D006325 4.0e-105 385.6 286 69.2
CAN.G1846.2 Capsicum annuum HOM05D004663 ORTHO05D006325 5.2e-105 385.2 291 68.4
Solyc02g021060.4 Solanum lycopersicum HOM05D004663 ORTHO05D006325 5.2e-105 385.2 309 65.7
Sopen02g005340 Solanum pennellii HOM05D004663 ORTHO05D006325 5.2e-105 385.2 309 65.7
Duzib128G0407 Durio zibethinus HOM05D004663 ORTHO05D006325 6.8e-105 384.8 292 69.2
HanXRQChr13g0390021 Helianthus annuus HOM05D004663 ORTHO05D006325 6.8e-105 384.8 248 75.4
MSTRG.8079 Avicennia marina HOM05D004663 ORTHO05D006325 8.9e-105 384.4 291 68.0
Medtr4g074330 Medicago truncatula HOM05D004663 ORTHO05D006325 8.9e-105 384.4 289 69.9
Nitab4.5_0004043g0010 Nicotiana tabacum HOM05D004663 ORTHO05D006325 1.2e-104 384.0 315 63.5
ECA233G5178 Erigeron canadensis HOM05D004663 ORTHO05D006325 1.5e-104 383.6 248 75.4
Lsat_1_v5_gn_8_32481 Lactuca sativa HOM05D004663 ORTHO05D006325 4.4e-104 382.1 284 68.0
HPP92_022410 Vanilla planifolia HOM05D004663 ORTHO05D006325 5.8e-104 381.7 305 65.2
TPR.G21555 Trifolium pratense HOM05D004663 ORTHO05D006325 1.3e-103 380.6 289 68.9
Ah.01g013090 Amaranthus hybridus HOM05D004663 ORTHO05D006325 2.9e-103 379.4 299 64.2
Lalb_Chr03g0024891 Lupinus albus HOM05D004663 ORTHO05D006325 2.9e-103 379.4 292 67.1
HanXRQChr13g0388091 Helianthus annuus HOM05D004663 ORTHO05D006325 6.4e-103 378.3 248 74.2
Psat7g174040 Pisum sativum HOM05D004663 ORTHO05D006325 6.4e-103 378.3 290 69.0
PSO017G2988 Papaver somniferum HOM05D004663 ORTHO05D006325 1.4e-102 377.1 300 64.0
TAR629G1859 Trochodendron aralioides HOM05D004663 ORTHO05D006325 1.4e-102 377.1 299 65.2
PGR142G1504 Punica granatum HOM05D004663 ORTHO05D006325 1.9e-102 376.7 296 66.6
EL10Ac9g22902 Beta vulgaris HOM05D004663 ORTHO05D006325 2.4e-102 376.3 266 71.1
ATR0618G342 Amborella trichopoda HOM05D004663 ORTHO05D006325 3.2e-102 375.9 292 66.8
Thhalv10021116m.g Eutrema salsugineum HOM05D004663 ORTHO05D006325 7.1e-102 374.8 308 63.0
Carub.0003s1841 Capsella rubella HOM05D004663 ORTHO05D006325 9.2e-102 374.4 310 62.9
PSO675G5757 Papaver somniferum HOM05D004663 ORTHO05D006325 9.2e-102 374.4 292 64.7
Rhsim05G0224300 Rhododendron simsii HOM05D004663 ORTHO05D006325 1.6e-101 373.6 308 62.7
AL3G31940 Arabidopsis lyrata HOM05D004663 ORTHO05D006325 2.1e-101 373.2 307 62.9
THA.LOC104820417 Tarenaya hassleriana HOM05D004663 ORTHO05D006325 7.8e-101 371.3 311 62.7
BcaC05g28590 Brassica carinata HOM05D004663 ORTHO05D006325 1.0e-100 370.9 301 64.1
C05p46970 Brassica napus HOM05D004663 ORTHO05D006325 1.0e-100 370.9 301 64.1
BolC5t33426H Brassica oleracea HOM05D004663 ORTHO05D006325 1.0e-100 370.9 301 64.1
BcaB06g25915 Brassica carinata HOM05D004663 ORTHO05D006325 3.0e-100 369.4 306 63.4
Aa31LG8G5480 Aethionema arabicum HOM05D004663 ORTHO05D006325 5.1e-100 368.6 303 63.0
A05p30980 Brassica napus HOM05D004663 ORTHO05D006325 5.1e-100 368.6 300 64.3
CARHR094010 Cardamine hirsuta HOM05D004663 ORTHO05D006325 8.7e-100 367.9 311 62.1
Sp3g16700 Schrenkiella parvula HOM05D004663 ORTHO05D006325 1.5e-99 367.1 312 62.2
Peaxi162Scf00818g00118 Petunia axillaris HOM05D004663 ORTHO05D006325 1.9e-99 366.7 306 63.7
AT3G18630 Arabidopsis thaliana HOM05D004663 ORTHO05D006325 4.3e-99 365.5 308 62.7
BraA05t21940Z Brassica rapa HOM05D004663 ORTHO05D006325 5.6e-99 365.2 299 63.5
DCAR_026912 Daucus carota HOM05D004663 ORTHO05D006325 2.1e-98 363.2 326 60.1
Zm00001eb066560 Zea mays HOM05D004663 ORTHO05D006325 6.2e-98 361.7 283 63.6
BcaC09g48820 Brassica carinata HOM05D004663 ORTHO05D006325 1.4e-97 360.5 296 62.2
C01p45610 Brassica napus HOM05D004663 ORTHO05D006325 1.4e-97 360.5 296 62.2
BolC1t04522H Brassica oleracea HOM05D004663 ORTHO05D006325 1.4e-97 360.5 296 62.2
AUR62012865 Chenopodium quinoa HOM05D004663 ORTHO05D006325 5.3e-97 358.6 319 60.2
SEGI_04236 Sequoiadendron giganteum HOM05D004663 ORTHO05D006325 6.9e-97 358.2 245 70.2
AUR62017645 Chenopodium quinoa HOM05D004663 ORTHO05D006325 2.0e-96 356.7 325 57.5
Os04g0673400 Oryza sativa ssp. japonica HOM05D004663 ORTHO05D006325 2.2e-95 353.2 217 75.6
Lj3C851G4 Lonicera japonica HOM05D005588 ORTHO05D006615 3.8e-95 352.4 210 80.5
HPP92_027507 Vanilla planifolia HOM05D004663 ORTHO05D006325 1.1e-94 350.9 219 78.1
SalBow2G2230 Salvia bowleyana HOM05D004663 ORTHO05D006325 1.0e-92 344.4 206 79.1
BraA01t03662Z Brassica rapa HOM05D004663 ORTHO05D006325 3.9e-92 342.4 290 62.1
MELO3C026796.2 Cucumis melo HOM05D004663 ORTHO05D006325 1.1e-91 340.9 265 67.9
Hma1.2p1_0499F.1_g166860 Hydrangea macrophylla HOM05D004663 ORTHO05D006325 3.3e-91 339.3 293 63.5
AagrBONN_evm.TU.Sc2ySwM_344.3482 Anthoceros agrestis HOM05D004663 ORTHO05D006325 3.6e-90 335.9 260 62.3
Dinv11709 Davidia involucrata HOM05D004663 ORTHO05D006325 1.4e-89 334.0 289 63.7
CDE05G3445 Ceratophyllum demersum HOM05D004663 ORTHO05D006325 5.3e-89 332.0 303 60.1
SMO361G0720 Selaginella moellendorffii HOM05D004663 ORTHO05D006325 5.3e-89 332.0 246 63.4
Pp3c14_15380 Physcomitrium patens HOM05D004663 ORTHO05D006325 2.6e-88 329.7 245 64.9
Sabra10G0129400 Salix brachista HOM05D004663 ORTHO05D006325 7.6e-88 328.2 263 65.4
Mapoly0028s0106 Marchantia polymorpha HOM05D004663 ORTHO05D006325 2.4e-86 323.2 266 60.5
A01p35830 Brassica napus HOM05D004663 ORTHO05D006325 1.2e-85 320.9 293 58.4
Medtr4g074300 Medicago truncatula HOM05D004663 ORTHO05D006325 1.3e-84 317.4 251 64.5
SMO361G0033 Selaginella moellendorffii HOM05D004663 ORTHO05D006325 4.8e-82 308.9 240 60.8
SMO087G0003 Selaginella moellendorffii HOM05D004663 ORTHO05D006325 7.6e-80 301.6 240 60.4
SHI04172 Sapria himalayana HOM05D004663 ORTHO05D006325 2.2e-79 300.1 336 51.5
Medtr4g074280 Medicago truncatula HOM05D004663 ORTHO05D006325 2.5e-75 286.6 232 59.9
CBR_g10874 Chara braunii HOM05D004663 ORTHO05D006325 3.8e-71 272.7 205 60.5
Oeu044073.1 Olea europaea HOM05D000222 ORTHO05D004962 3.5e-69 266.2 295 51.2
MCO16G090 Micromonas commoda HOM05D004663 ORTHO05D006325 6.0e-69 265.4 212 59.9
Cpa.g.sc0.166 Carica papaya HOM05D004663 ORTHO05D006325 3.1e-65 253.1 223 61.4
Ciclev10006661m.g Citrus clementina HOM05D004663 ORTHO05D006325 3.1e-65 253.1 228 58.8
MBI03_g05116_MAGBIO Magnolia biondii HOM05D004663 ORTHO05D006325 5.0e-63 245.7 216 63.0
unitig_22.g6361 Utricularia gibba HOM05D004663 ORTHO05D006325 5.5e-62 242.3 166 71.1
Cre17.g746347 Chlamydomonas reinhardtii HOM05D004663 ORTHO05D006325 6.7e-60 235.3 280 46.8
PRCOL_00002421 Prasinoderma coloniale HOM05D001829 ORTHO05D007093 9.1e-57 224.9 187 58.3
Ca_29479_v3 Cicer arietinum L. HOM05D004663 ORTHO05D006325 8.5e-55 218.4 197 54.8
Lju1225A1T39 Lonicera japonica HOM05D004663 ORTHO05D006325 2.4e-49 200.3 194 56.2
Haze_26212 Corylus avellana HOM05D004663 ORTHO05D006325 1.0e-47 194.9 262 43.9
MD03G1100100 Malus domestica HOM05D004663 ORTHO05D006325 2.2e-47 193.7 109 86.2
Lj9C88T6 Lonicera japonica HOM05D004663 ORTHO05D006325 1.4e-44 184.5 210 51.9
Glyma.08G121000 Glycine max HOM05D004663 ORTHO05D006325 8.5e-39 165.2 100 77.0
MBI03_g05117_MAGBIO Magnolia biondii HOM05D004663 ORTHO05D006325 1.4e-36 157.9 87 82.8
Pp3c9_12680 Physcomitrium patens HOM05D004663 ORTHO05D012250 7.5e-35 152.1 175 45.7
Pp3c15_19430 Physcomitrium patens HOM05D004663 ORTHO05D006325 3.7e-34 149.8 165 48.5
Pp3c16_12590 Physcomitrium patens HOM05D004663 ORTHO05D006325 9.1e-33 145.2 165 46.7
Pp3c16_10730 Physcomitrium patens HOM05D004663 ORTHO05D006325 2.7e-32 143.7 175 45.7
Lju1225C2G8 Lonicera japonica HOM05D004663 ORTHO05D006325 2.2e-31 140.6 97 73.2
arahy.Tifrunner.gnm1.ann1.AZJV2P Arachis hypogaea HOM05D004663 ORTHO05D006325 6.5e-31 139.0 97 70.1
Pp3s67_100 Physcomitrium patens HOM05D004663 ORTHO05D006325 5.5e-30 136.0 165 43.6
arahy.Tifrunner.gnm1.ann1.A394HF Arachis hypogaea HOM05D004663 ORTHO05D006325 4.7e-29 132.9 77 77.9
Glyma.11G103600 Glycine max HOM05D004663 ORTHO05D006325 1.0e-28 131.7 80 77.5
Pp3c16_6060 Physcomitrium patens HOM05D004663 ORTHO05D012250 8.8e-28 128.6 175 41.1
Lalb_Chr01g0001561 Lupinus albus HOM05D004663 ORTHO05D006325 1.1e-25 121.7 165 46.7
Pp3c10_11550 Physcomitrium patens HOM05D004663 ORTHO05D006325 1.3e-23 114.8 175 36.6
CBR_g4801 Chara braunii HOM05D004663 ORTHO05D134352 6.6e-23 112.5 138 46.4
Pp3c14_3990 Physcomitrium patens HOM05D004663 ORTHO05D006325 4.2e-22 109.8 164 37.8
Pp3c14_4000 Physcomitrium patens HOM05D004663 ORTHO05D012250 4.2e-22 109.8 164 37.8
Pp3c11_15750 Physcomitrium patens HOM05D004663 ORTHO05D006325 1.0e-20 105.1 175 34.3
Pp3c1_10590 Physcomitrium patens HOM05D004663 ORTHO05D006325 1.4e-20 104.8 116 45.7
Medtr4g077140 Medicago truncatula HOM05D004663 ORTHO05D006325 4.4e-19 99.8 73 63.0
Pp3c1_280 Physcomitrium patens HOM05D004663 ORTHO05D006325 1.4e-17 94.7 111 43.2
Pp3c8_4630 Physcomitrium patens HOM05D004663 ORTHO05D311796 1.2e-11 75.1 157 29.3
Medtr3g063510 Medicago truncatula HOM05D004663 ORTHO05D006325 6.0e-08 62.8 57 54.4
Pp3c4_24930 Physcomitrium patens HOM05D004663 ORTHO05D006325 2.3e-07 60.8 92 37.0
AUR62002800 Chenopodium quinoa HOM05D004663 ORTHO05D006325 1.5e-06 58.2 32 71.9


User provided reference genes

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