Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN07G1379 Fragaria x ananassa HOM05D005984 ORTHO05D007754 9.9e-234 813.1 432 100.0
FAN12G1392 Fragaria x ananassa HOM05D005984 ORTHO05D007754 1.3e-212 743.0 432 93.1
FvH4_4g36890 Fragaria vesca HOM05D005984 ORTHO05D007754 1.4e-211 739.6 433 93.1
RcHm_v2.0_Chr4g0446671 Rosa chinensis HOM05D005984 ORTHO05D007754 1.1e-197 693.3 433 88.7
FAN17G0887 Fragaria x ananassa HOM05D005984 ORTHO05D007754 1.2e-183 646.7 438 85.2
Prupe.1G347100 Prunus persica HOM05D005984 ORTHO05D007754 6.3e-180 634.4 444 80.6
MD16G1002000 Malus domestica HOM05D005984 ORTHO05D007754 1.5e-176 623.2 434 79.5
MD13G1005900 Malus domestica HOM05D005984 ORTHO05D007754 3.2e-176 622.1 439 74.3
GSVIVG01012045001 Vitis vinifera HOM05D005984 ORTHO05D007754 2.0e-173 612.8 423 73.8
CANSAT56G2432 Cannabis sativa HOM05D005984 ORTHO05D007754 6.3e-172 607.8 422 78.7
Dinv11718 Davidia involucrata HOM05D005984 ORTHO05D007754 3.8e-169 598.6 437 77.3
CSS0012805 Camellia sinensis var. sinensis HOM05D005984 ORTHO05D007754 2.1e-167 592.8 427 72.4
TAR629G1998 Trochodendron aralioides HOM05D005984 ORTHO05D007754 2.1e-167 592.8 423 74.0
Cpa.g.sc44.38 Carica papaya HOM05D005984 ORTHO05D007754 1.4e-166 590.1 429 72.5
CsaV3_7G030600 Cucumis sativus L. HOM05D005984 ORTHO05D007754 2.3e-166 589.3 430 72.3
Thecc.02G160200 Theobroma cacao HOM05D005984 ORTHO05D007754 6.8e-166 587.8 427 72.4
CiPaw.06G060100 Carya illinoinensis HOM05D005984 ORTHO05D007754 1.5e-165 586.6 452 70.4
Lj3g0024041 Lotus japonicus HOM05D005984 ORTHO05D007754 2.0e-165 586.3 423 77.5
CDE07G0658 Ceratophyllum demersum HOM05D005984 ORTHO05D007754 2.6e-165 585.9 435 74.9
Lj3A850G95 Lonicera japonica HOM05D005984 ORTHO05D007754 3.4e-165 585.5 428 72.7
Lalb_Chr03g0024761 Lupinus albus HOM05D005984 ORTHO05D007754 3.4e-165 585.5 443 74.9
ClCG09G004540 Citrullus lanatus HOM05D005984 ORTHO05D007754 2.2e-164 582.8 429 71.6
vmacro08597 Vaccinium macrocarpon HOM05D005984 ORTHO05D007754 2.8e-164 582.4 421 77.0
Gohir.A03G164600 Gossypium hirsutum HOM05D005984 ORTHO05D007754 3.7e-164 582.0 450 70.7
Hma1.2p1_0122F.1_g057600 Hydrangea macrophylla HOM05D005984 ORTHO05D007754 3.7e-164 582.0 441 70.5
Gohir.D02G187800 Gossypium hirsutum HOM05D005984 ORTHO05D007754 4.9e-164 581.6 449 70.6
Ciclev10031672m.g Citrus clementina HOM05D005984 ORTHO05D007754 6.3e-164 581.3 436 73.2
arahy.Tifrunner.gnm1.ann1.0C6YUW Arachis hypogaea HOM05D005984 ORTHO05D007754 8.3e-164 580.9 461 67.7
arahy.Tifrunner.gnm1.ann1.B6F48P Arachis hypogaea HOM05D005984 ORTHO05D007754 8.3e-164 580.9 461 67.5
Gorai.005G210500 Gossypium raimondii HOM05D005984 ORTHO05D007754 8.3e-164 580.9 449 70.4
Manes.11G108100 Manihot esculenta HOM05D005984 ORTHO05D007754 1.1e-163 580.5 395 80.3
Sed0023953 Sechium edule HOM05D005984 ORTHO05D007754 1.8e-163 579.7 423 75.7
Cfa008738 Carpinus fangiana HOM05D005984 ORTHO05D007754 7.0e-163 577.8 436 70.0
Glyma.11G100800 Glycine max HOM05D005984 ORTHO05D007754 1.6e-162 576.6 419 71.4
PSO063G6567 Papaver somniferum HOM05D005984 ORTHO05D007754 1.6e-162 576.6 449 68.2
CAN.G157.24 Capsicum annuum HOM05D005984 ORTHO05D007754 2.7e-162 575.9 426 70.2
PSO782G0234 Papaver somniferum HOM05D005984 ORTHO05D007754 2.7e-162 575.9 442 69.7
VMungo1127G1047 Vigna mungo HOM05D005984 ORTHO05D007754 2.7e-162 575.9 384 75.8
Aqoxy3G04258 Aquilegia oxysepala HOM05D005984 ORTHO05D007754 3.5e-162 575.5 447 69.4
TWI53G1952 Tripterygium wilfordii HOM05D005984 ORTHO05D007754 4.5e-162 575.1 419 71.8
ECA246G1868 Erigeron canadensis HOM05D005984 ORTHO05D007754 5.9e-162 574.7 390 80.0
Glyma.12G026900 Glycine max HOM05D005984 ORTHO05D007754 5.9e-162 574.7 419 71.4
Duzib052G0297 Durio zibethinus HOM05D005984 ORTHO05D007754 1.0e-161 573.9 431 69.6
TPR.G32343 Trifolium pratense HOM05D005984 ORTHO05D007754 1.0e-161 573.9 423 71.9
Atru.chr11.1117 Acer truncatum HOM05D005984 ORTHO05D007754 1.3e-161 573.5 419 76.1
DCAR_002576 Daucus carota HOM05D005984 ORTHO05D007754 1.3e-161 573.5 425 71.8
Sed0006813 Sechium edule HOM05D005984 ORTHO05D007754 2.3e-161 572.8 416 72.1
Actinidia13710 Actinidia chinensis HOM05D005984 ORTHO05D007754 2.9e-161 572.4 410 72.2
Medtr4g075040 Medicago truncatula HOM05D005984 ORTHO05D007754 3.9e-161 572.0 428 70.8
Actinidia38413 Actinidia chinensis HOM05D005984 ORTHO05D007754 5.0e-161 571.6 435 70.1
VMungo0647G2306 Vigna mungo HOM05D005984 ORTHO05D007754 5.0e-161 571.6 384 75.3
Thhalv10004338m.g Eutrema salsugineum HOM05D005984 ORTHO05D007754 6.6e-161 571.2 433 69.5
COL.COLO4_19602 Corchorus olitorius HOM05D005984 ORTHO05D007754 8.6e-161 570.9 470 65.5
Aa31LG11G2610 Aethionema arabicum HOM05D005984 ORTHO05D007754 4.3e-160 568.5 441 72.3
Phvul.011G029800 Phaseolus vulgaris HOM05D005984 ORTHO05D007754 4.3e-160 568.5 433 69.3
ATR0618G114 Amborella trichopoda HOM05D005984 ORTHO05D007754 5.6e-160 568.2 424 70.5
Sp2g24000 Schrenkiella parvula HOM05D005984 ORTHO05D007754 5.6e-160 568.2 434 74.0
AT5G23120 Arabidopsis thaliana HOM05D005984 ORTHO05D007754 7.3e-160 567.8 435 69.4
C07p44410 Brassica napus HOM05D005984 ORTHO05D007754 7.3e-160 567.8 432 69.7
A03p46390 Brassica napus HOM05D005984 ORTHO05D007754 1.2e-159 567.0 435 69.2
BraA03t13765Z Brassica rapa HOM05D005984 ORTHO05D007754 1.2e-159 567.0 435 69.2
Rhsim04G0167300 Rhododendron simsii HOM05D005984 ORTHO05D007754 1.2e-159 567.0 395 73.4
THA.LOC104800911 Tarenaya hassleriana HOM05D005984 ORTHO05D007754 1.2e-159 567.0 424 70.3
BolC7t44963H Brassica oleracea HOM05D005984 ORTHO05D007754 2.1e-159 566.2 432 69.4
Psat7g177360 Pisum sativum HOM05D005984 ORTHO05D007754 2.1e-159 566.2 384 75.0
PGSC0003DMG400002324 Solanum tuberosum HOM05D005984 ORTHO05D007754 2.1e-159 566.2 411 71.0
Sopen02g003530 Solanum pennellii HOM05D005984 ORTHO05D007754 2.8e-159 565.8 413 70.7
Sabra07G0060100 Salix brachista HOM05D005984 ORTHO05D007754 4.7e-159 565.1 428 68.7
Manes.04G064200 Manihot esculenta HOM05D005984 ORTHO05D007754 6.1e-159 564.7 397 76.8
Potri.007G071300 Populus trichocarpa HOM05D005984 ORTHO05D007754 6.1e-159 564.7 400 72.0
AL6G34310 Arabidopsis lyrata HOM05D005984 ORTHO05D007754 8.0e-159 564.3 420 75.0
CARHR190410 Cardamine hirsuta HOM05D005984 ORTHO05D007754 8.0e-159 564.3 440 72.0
PGR044G2022 Punica granatum HOM05D005984 ORTHO05D007754 8.0e-159 564.3 448 67.0
Carub.0006s2091 Capsella rubella HOM05D005984 ORTHO05D007754 3.1e-158 562.4 384 74.5
Haze_11755 Corylus avellana HOM05D005984 ORTHO05D007754 3.1e-158 562.4 448 67.6
Os06g0729650 Oryza sativa ssp. japonica HOM05D005984 ORTHO05D007754 3.1e-158 562.4 396 72.5
Zm00001eb271820 Zea mays HOM05D005984 ORTHO05D007754 3.1e-158 562.4 401 71.6
Lsat_1_v5_gn_3_35480 Lactuca sativa HOM05D005984 ORTHO05D007754 5.2e-158 561.6 402 75.6
Ca_19021_v3 Cicer arietinum L. HOM05D005984 ORTHO05D007754 1.5e-157 560.1 415 70.8
Cc11_g02280 Coffea canephora HOM05D005984 ORTHO05D007754 4.4e-157 558.5 433 67.7
HPP92_012878 Vanilla planifolia HOM05D005984 ORTHO05D007754 5.8e-157 558.1 385 73.5
AUR62017696 Chenopodium quinoa HOM05D005984 ORTHO05D007754 1.3e-156 557.0 381 78.5
Nn3g18651 Nelumbo nucifera HOM05D005984 ORTHO05D007754 6.4e-156 554.7 407 71.7
MELO3C023596.2 Cucumis melo HOM05D005984 ORTHO05D007754 1.1e-155 553.9 407 71.7
MSTRG.431 Avicennia marina HOM05D005984 ORTHO05D007754 9.2e-155 550.8 383 73.1
Oeu026903.3 Olea europaea HOM05D005984 ORTHO05D007754 3.0e-153 545.8 442 71.0
EL10Ac9g22946 Beta vulgaris HOM05D005984 ORTHO05D007754 8.6e-153 544.3 453 65.1
Eucgr.J00865 Eucalyptus grandis HOM05D005984 ORTHO05D007754 1.1e-152 543.9 385 75.8
AUR62015232 Chenopodium quinoa HOM05D005984 ORTHO05D007754 2.8e-151 539.3 349 81.7
AUR62015234 Chenopodium quinoa HOM05D005984 ORTHO05D007754 2.8e-151 539.3 349 81.7
unitig_8.g2892 Utricularia gibba HOM05D005984 ORTHO05D007754 3.6e-151 538.9 387 71.1
Nitab4.5_0000133g0050 Nicotiana tabacum HOM05D005984 ORTHO05D007754 4.7e-151 538.5 541 60.6
SalBow2G1456 Salvia bowleyana HOM05D005984 ORTHO05D007754 4.7e-151 538.5 447 68.7
SGA_v2.0_scaffold88G27230 Striga asiatica HOM05D005984 ORTHO05D007754 4.7e-151 538.5 406 72.9
Hund08579 Selenicereus undatus HOM05D005984 ORTHO05D007754 1.2e-149 533.9 412 68.0
HanXRQChr17g0544921 Helianthus annuus HOM05D005984 ORTHO05D007754 4.9e-148 528.5 401 73.3
HanXRQChr06g0171511 Helianthus annuus HOM05D005984 ORTHO05D007754 5.4e-147 525.0 365 77.8
Migut.E00699 Erythranthe guttata HOM05D005984 ORTHO05D007754 1.2e-146 523.9 413 66.3
Nitab4.5_0006277g0020 Nicotiana tabacum HOM05D005984 ORTHO05D007754 1.2e-146 523.9 572 56.3
Solyc02g014150.4 Solanum lycopersicum HOM05D005984 ORTHO05D007754 1.2e-146 523.9 390 69.5
QL03p045967 Quercus lobata HOM05D005984 ORTHO05D007754 3.0e-145 519.2 519 55.7
Pp3c15_7930 Physcomitrium patens HOM05D005984 ORTHO05D007754 2.5e-144 516.2 378 74.6
Pp3c9_10350 Physcomitrium patens HOM05D005984 ORTHO05D007754 9.5e-144 514.2 398 73.4
SMO347G0352 Selaginella moellendorffii HOM05D005984 ORTHO05D007754 1.8e-142 510.0 381 67.2
Sc10g0006780 Simmondsia chinensis HOM05D005984 ORTHO05D007754 2.6e-141 506.1 359 72.7
CDE04G0799 Ceratophyllum demersum HOM05D005984 ORTHO05D007754 1.7e-140 503.4 435 69.0
Ah.01g001560 Amaranthus hybridus HOM05D005984 ORTHO05D007754 2.2e-140 503.1 399 67.9
Peaxi162Scf00363g00317 Petunia axillaris HOM05D005984 ORTHO05D007754 3.2e-139 499.2 493 60.9
Mapoly0020s0149 Marchantia polymorpha HOM05D005984 ORTHO05D007754 6.4e-132 474.9 386 61.9
CBR_g11122 Chara braunii HOM05D005984 ORTHO05D007754 1.2e-114 417.5 382 59.9
AagrBONN_evm.TU.Sc2ySwM_369.365 Anthoceros agrestis HOM05D005984 ORTHO05D007754 1.4e-110 404.1 361 63.4
Dinv01185 Davidia involucrata HOM05D005984 ORTHO05D007754 2.5e-107 393.3 203 92.1
Cre06.g273700 Chlamydomonas reinhardtii HOM05D005984 ORTHO05D007754 5.1e-105 385.6 384 57.6
MCO05G498 Micromonas commoda HOM05D005984 ORTHO05D007754 1.9e-104 383.6 389 56.3
Hma1.2p1_0122F.1_g057590 Hydrangea macrophylla HOM05D005984 ORTHO05D007754 3.2e-91 339.7 235 72.8
PRCOL_00000217 Prasinoderma coloniale HOM05D005984 ORTHO05D007754 4.7e-74 282.7 325 52.9
MD15G1106700 Malus domestica HOM05D005984 ORTHO05D007754 2.7e-58 230.3 114 93.9
AagrBONN_evm.TU.Sc2ySwM_368.563 Anthoceros agrestis HOM05D001974 ORTHO05D001995 1.5e-56 224.6 378 41.5
C09p07860 Brassica napus HOM05D005984 ORTHO05D007754 2.8e-50 203.8 181 62.4
MD00G1043400 Malus domestica HOM05D005984 ORTHO05D007754 2.9e-44 183.7 111 81.1
BcaB04g19886 Brassica carinata HOM05D005984 ORTHO05D007754 1.4e-41 174.9 211 51.2
SEGI_34707 Sequoiadendron giganteum HOM05D005984 ORTHO05D007754 4.4e-40 169.9 148 61.5
HanXRQChr10g0318441 Helianthus annuus HOM05D005984 ORTHO05D007754 1.3e-31 141.7 69 91.3
AUR62024854 Chenopodium quinoa HOM05D005984 ORTHO05D007754 1.5e-27 128.3 70 91.4
arahy.Tifrunner.gnm1.ann1.25R2K9 Arachis hypogaea HOM05D005984 ORTHO05D014444 1.9e-27 127.9 85 71.8
arahy.Tifrunner.gnm1.ann1.B9R6EW Arachis hypogaea HOM05D005984 ORTHO05D014444 2.8e-26 124.0 84 70.2
SEGI_27749 Sequoiadendron giganteum HOM05D005984 ORTHO05D007754 6.6e-20 102.8 53 86.8
C09p07870 Brassica napus HOM05D005984 ORTHO05D042888 1.7e-15 88.2 97 50.5
MBI03_g15323_MAGBIO Magnolia biondii HOM05D002934 ORTHO05D003937 1.7e-15 88.2 43 90.7
Zm00001eb227280 Zea mays HOM05D005984 ORTHO05D007754 3.2e-14 84.0 62 67.7
Glyma.06G237300 Glycine max HOM05D005984 ORTHO05D007754 2.1e-10 71.2 72 55.6
Glyma.01G000174 Glycine max HOM05D036214 ORTHO05D007754 3.6e-10 70.5 43 76.7
BolC9t53702H Brassica oleracea HOM05D005984 ORTHO05D042888 6.2e-10 69.7 61 59.0
Pp3c24_8290 Physcomitrium patens HOM05D013586 ORTHO05D011470 3.1e-09 67.4 38 73.7
SGA_v2.0_scaffold57G20111 Striga asiatica HOM05D005984 ORTHO05D402503 3.4e-08 63.9 44 65.9
AUR62043071 Chenopodium quinoa HOM05D003339 ORTHO05D003847 5.4e-06 56.6 61 50.8


User provided reference genes

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