Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN07G0366 Fragaria x ananassa HOM05D002252 ORTHO05D208664 2.2e-38 161.8 79 100.0
FAN17G1145 Fragaria x ananassa HOM05D002252 ORTHO05D209456 2.1e-17 92.0 70 75.7
FvH4_6g52280 Fragaria vesca HOM05D002252 ORTHO05D002451 5.1e-11 70.9 44 75.0
FAN02G1702 Fragaria x ananassa HOM05D002252 ORTHO05D002451 5.1e-11 70.9 44 75.0
FAN05G0765 Fragaria x ananassa HOM05D002252 ORTHO05D002451 5.1e-11 70.9 44 75.0
FAN09G0242 Fragaria x ananassa HOM05D002252 ORTHO05D002451 5.1e-11 70.9 44 75.0
FAN14G0722 Fragaria x ananassa HOM05D002252 ORTHO05D002451 5.1e-11 70.9 44 75.0
TPR.G1082 Trifolium pratense HOM05D002252 ORTHO05D002451 1.5e-10 69.3 44 72.7
Rhsim08G0046700 Rhododendron simsii HOM05D002252 ORTHO05D002451 1.9e-10 68.9 44 72.7
RhsimUnG0150600 Rhododendron simsii HOM05D002252 ORTHO05D002451 1.9e-10 68.9 44 72.7
RcHm_v2.0_Chr2g0173811 Rosa chinensis HOM05D002252 ORTHO05D002451 1.9e-10 68.9 44 72.7
PSO478G0553 Papaver somniferum HOM05D002252 ORTHO05D002451 2.5e-10 68.6 44 72.7
PSO509G0032 Papaver somniferum HOM05D002252 ORTHO05D002451 2.5e-10 68.6 44 72.7
Lalb_Chr24g0403431 Lupinus albus HOM05D002252 ORTHO05D002451 4.3e-10 67.8 44 70.5
A06p41220 Brassica napus HOM05D002252 ORTHO05D002451 5.6e-10 67.4 44 70.5
BraA06t27046Z Brassica rapa HOM05D002252 ORTHO05D002451 5.6e-10 67.4 44 70.5
vmacro18308 Vaccinium macrocarpon HOM05D002252 ORTHO05D002451 5.6e-10 67.4 44 70.5
BcaC06g33825 Brassica carinata HOM05D002252 ORTHO05D002451 7.4e-10 67.0 44 70.5
BcaNung05650 Brassica carinata HOM05D002252 ORTHO05D002451 7.4e-10 67.0 44 70.5
C07p36440 Brassica napus HOM05D002252 ORTHO05D002451 7.4e-10 67.0 44 70.5
BolC7t44162H Brassica oleracea HOM05D002252 ORTHO05D002451 7.4e-10 67.0 44 70.5
Ca_03860_v3 Cicer arietinum L. HOM05D002252 ORTHO05D002451 7.4e-10 67.0 44 70.5
Eucgr.J00347 Eucalyptus grandis HOM05D002252 ORTHO05D002451 7.4e-10 67.0 44 70.5
Thhalv10004747m.g Eutrema salsugineum HOM05D002252 ORTHO05D002451 7.4e-10 67.0 44 70.5
Psat3g168600 Pisum sativum HOM05D002252 ORTHO05D002451 7.4e-10 67.0 44 70.5
Sp2g16570 Schrenkiella parvula HOM05D002252 ORTHO05D002451 7.4e-10 67.0 44 70.5
Medtr0018s0260 Medicago truncatula HOM05D002252 ORTHO05D002451 9.6e-10 66.6 44 70.5
Medtr1g492610 Medicago truncatula HOM05D002252 ORTHO05D002451 9.6e-10 66.6 44 70.5
QL02p073340 Quercus lobata HOM05D002252 ORTHO05D002451 9.6e-10 66.6 44 68.2
A02p35420 Brassica napus HOM05D002252 ORTHO05D002451 1.3e-09 66.2 45 68.9
BraA02t08543Z Brassica rapa HOM05D002252 ORTHO05D002451 1.3e-09 66.2 45 68.9
THA.LOC104805354 Tarenaya hassleriana HOM05D002252 ORTHO05D002451 1.3e-09 66.2 44 70.5
ECA246G3649 Erigeron canadensis HOM05D002252 ORTHO05D002451 1.6e-09 65.9 44 70.5
Potri.001G338400 Populus trichocarpa HOM05D002252 ORTHO05D002451 1.6e-09 65.9 44 70.5
Sabra16G0219100 Salix brachista HOM05D002252 ORTHO05D002451 1.6e-09 65.9 44 70.5
BcaC04g23905 Brassica carinata HOM05D002252 ORTHO05D002451 2.1e-09 65.5 44 68.2
BcaNung06207 Brassica carinata HOM05D002252 ORTHO05D002451 2.1e-09 65.5 44 68.2
BcaNung06208 Brassica carinata HOM05D002252 ORTHO05D002451 2.1e-09 65.5 44 68.2
A09p03380 Brassica napus HOM05D002252 ORTHO05D002451 2.1e-09 65.5 44 68.2
C02p54130 Brassica napus HOM05D002252 ORTHO05D002451 2.1e-09 65.5 44 68.2
C09p03600 Brassica napus HOM05D002252 ORTHO05D002451 2.1e-09 65.5 44 68.2
BolC2t11476H Brassica oleracea HOM05D002252 ORTHO05D002451 2.1e-09 65.5 44 68.2
BolC9t53279H Brassica oleracea HOM05D002252 ORTHO05D002451 2.1e-09 65.5 44 68.2
BraA09t35977Z Brassica rapa HOM05D002252 ORTHO05D002451 2.1e-09 65.5 44 68.2
Manes.17G108500 Manihot esculenta HOM05D002252 ORTHO05D002451 2.8e-09 65.1 44 68.2
Aa31LG9G970 Aethionema arabicum HOM05D002252 ORTHO05D002451 3.7e-09 64.7 44 68.2
AL7G49090 Arabidopsis lyrata HOM05D002252 ORTHO05D002451 3.7e-09 64.7 44 68.2
AT5G40650 Arabidopsis thaliana HOM05D002252 ORTHO05D002451 3.7e-09 64.7 44 68.2
Carub.0007s3483 Capsella rubella HOM05D002252 ORTHO05D002451 3.7e-09 64.7 44 68.2
CARHR261300 Cardamine hirsuta HOM05D002252 ORTHO05D002451 3.7e-09 64.7 44 68.2
Thhalv10027879m.g Eutrema salsugineum HOM05D002252 ORTHO05D002451 3.7e-09 64.7 44 68.2
Lju41C45G5 Lonicera japonica HOM05D002252 ORTHO05D002451 3.7e-09 64.7 44 65.9
Sp7g01210 Schrenkiella parvula HOM05D002252 ORTHO05D002451 3.7e-09 64.7 44 68.2
Sed0010707 Sechium edule HOM05D002252 ORTHO05D002451 3.7e-09 64.7 44 68.2
Actinidia05951 Actinidia chinensis HOM05D002252 ORTHO05D002451 4.8e-09 64.3 44 68.2
Gohir.A05G342500 Gossypium hirsutum HOM05D002252 ORTHO05D002451 4.8e-09 64.3 44 68.2
PGR142G3931 Punica granatum HOM05D002252 ORTHO05D002451 4.8e-09 64.3 44 68.2
THA.LOC104824570 Tarenaya hassleriana HOM05D002252 ORTHO05D002451 4.8e-09 64.3 44 68.2
Actinidia36151 Actinidia chinensis HOM05D002252 ORTHO05D002451 6.2e-09 63.9 44 68.2
CARHR148700 Cardamine hirsuta HOM05D002252 ORTHO05D002451 6.2e-09 63.9 44 68.2
Manes.15G154900 Manihot esculenta HOM05D002252 ORTHO05D002451 6.2e-09 63.9 44 68.2
Prupe.3G297900 Prunus persica HOM05D002252 ORTHO05D002451 8.1e-09 63.5 44 68.2
Aa31LG2G5420 Aethionema arabicum HOM05D002252 ORTHO05D002451 1.1e-08 63.2 44 65.9
arahy.Tifrunner.gnm1.ann1.18R6S7 Arachis hypogaea HOM05D002252 ORTHO05D002451 1.1e-08 63.2 44 65.9
arahy.Tifrunner.gnm1.ann1.EL261C Arachis hypogaea HOM05D002252 ORTHO05D002451 1.1e-08 63.2 44 65.9
Cfa007300 Carpinus fangiana HOM05D002252 ORTHO05D002451 1.1e-08 63.2 44 65.9
SGA_v2.0_scaffold154G37142 Striga asiatica HOM05D002252 ORTHO05D002451 1.1e-08 63.2 44 63.6
SGA_v2.0_scaffold47G17534 Striga asiatica HOM05D002252 ORTHO05D002451 1.1e-08 63.2 44 63.6
HPP92_007222 Vanilla planifolia HOM05D002252 ORTHO05D002451 1.1e-08 63.2 44 63.6
arahy.Tifrunner.gnm1.ann1.L3RJRN Arachis hypogaea HOM05D002252 ORTHO05D002451 1.4e-08 62.8 44 65.9
arahy.Tifrunner.gnm1.ann1.MZXR1C Arachis hypogaea HOM05D002252 ORTHO05D002451 1.4e-08 62.8 44 65.9
CANSAT64G2483 Cannabis sativa HOM05D002252 ORTHO05D002451 1.4e-08 62.8 44 65.9
Cpa.g.sc130.56 Carica papaya HOM05D002252 ORTHO05D002451 1.4e-08 62.8 44 65.9
Haze_14794 Corylus avellana HOM05D002252 ORTHO05D002451 1.4e-08 62.8 44 65.9
Duzib147G0730 Durio zibethinus HOM05D002252 ORTHO05D002451 1.4e-08 62.8 44 68.2
Gohir.A07G225100 Gossypium hirsutum HOM05D002252 ORTHO05D002451 1.4e-08 62.8 44 68.2
Gohir.D04G080480 Gossypium hirsutum HOM05D002252 ORTHO05D002451 1.4e-08 62.8 44 68.2
Gohir.D07G232300 Gossypium hirsutum HOM05D002252 ORTHO05D002451 1.4e-08 62.8 44 68.2
Gorai.001G267500 Gossypium raimondii HOM05D002252 ORTHO05D002451 1.4e-08 62.8 44 68.2
Gorai.012G091400 Gossypium raimondii HOM05D002252 ORTHO05D002451 1.4e-08 62.8 44 68.2
Oeu050444.4 Olea europaea HOM05D002252 ORTHO05D002451 1.4e-08 62.8 44 65.9
Phvul.008G145726 Phaseolus vulgaris HOM05D002252 ORTHO05D002451 1.4e-08 62.8 44 65.9
Thecc.04G026800 Theobroma cacao HOM05D002252 ORTHO05D002451 1.4e-08 62.8 44 68.2
Aqoxy3G01308 Aquilegia oxysepala HOM05D002252 ORTHO05D002451 1.8e-08 62.4 44 65.9
BcaC08g44473 Brassica carinata HOM05D002252 ORTHO05D002451 1.8e-08 62.4 44 65.9
A07p20420 Brassica napus HOM05D002252 ORTHO05D002451 1.8e-08 62.4 44 65.9
C06p19310 Brassica napus HOM05D002252 ORTHO05D002451 1.8e-08 62.4 44 65.9
BraA07t29739Z Brassica rapa HOM05D002252 ORTHO05D002451 1.8e-08 62.4 44 65.9
CiPaw.04G032100 Carya illinoinensis HOM05D002252 ORTHO05D002451 1.8e-08 62.4 44 65.9
Ciclev10016181m.g Citrus clementina HOM05D002252 ORTHO05D002451 1.8e-08 62.4 44 68.2
COL.COLO4_29241 Corchorus olitorius HOM05D002252 ORTHO05D002451 1.8e-08 62.4 44 65.9
Oeu062396.1 Olea europaea HOM05D002252 ORTHO05D002451 1.8e-08 62.4 44 65.9
TAR629G1595 Trochodendron aralioides HOM05D002252 ORTHO05D002451 1.8e-08 62.4 44 68.2
Atru.chr6.2471 Acer truncatum HOM05D002252 ORTHO05D002451 2.4e-08 62.0 44 65.9
Carub.0005s0569 Capsella rubella HOM05D002252 ORTHO05D002451 2.4e-08 62.0 44 65.9
ClCG05G013010 Citrullus lanatus HOM05D002252 ORTHO05D002451 2.4e-08 62.0 44 65.9
MELO3C014824.2 Cucumis melo HOM05D002252 ORTHO05D002451 2.4e-08 62.0 44 65.9
CsaV3_3G027530 Cucumis sativus L. HOM05D002252 ORTHO05D002451 2.4e-08 62.0 44 65.9
Oeu037153.1 Olea europaea HOM05D002252 ORTHO05D002451 2.4e-08 62.0 44 63.6
unitig_1.g29342 Utricularia gibba HOM05D002252 ORTHO05D002451 2.4e-08 62.0 44 65.9
unitig_748.g6971 Utricularia gibba HOM05D002252 ORTHO05D002451 2.4e-08 62.0 44 65.9
BcaB07g30165 Brassica carinata HOM05D002252 ORTHO05D002451 3.1e-08 61.6 45 66.7
Peaxi162Scf00420g00234 Petunia axillaris HOM05D002252 ORTHO05D002451 3.1e-08 61.6 44 65.9
TWI36G1614 Tripterygium wilfordii HOM05D002252 ORTHO05D002451 3.1e-08 61.6 44 65.9
TWI56G0318 Tripterygium wilfordii HOM05D002252 ORTHO05D002451 3.1e-08 61.6 44 65.9
MSTRG.15548 Avicennia marina HOM05D002252 ORTHO05D002451 4.0e-08 61.2 44 63.6
MSTRG.3273 Avicennia marina HOM05D002252 ORTHO05D002451 4.0e-08 61.2 44 63.6
Dinv25705 Davidia involucrata HOM05D002252 ORTHO05D002451 4.0e-08 61.2 44 65.9
Duzib264G0940 Durio zibethinus HOM05D002252 ORTHO05D002451 4.0e-08 61.2 44 65.9
Lj7A604G59 Lonicera japonica HOM05D002252 ORTHO05D002451 4.0e-08 61.2 44 68.2
Oeu013961.2 Olea europaea HOM05D002252 ORTHO05D002451 4.0e-08 61.2 44 63.6
Os08g0120000 Oryza sativa ssp. japonica HOM05D002252 ORTHO05D002451 4.0e-08 61.2 44 63.6
AUR62037146 Chenopodium quinoa HOM05D002252 ORTHO05D002451 5.3e-08 60.8 44 63.6
VMungo1080G0236 Vigna mungo HOM05D002252 ORTHO05D002451 5.3e-08 60.8 44 63.6
SalBow7G1758 Salvia bowleyana HOM05D002252 ORTHO05D002451 6.9e-08 60.5 44 63.6
Sed0001228 Sechium edule HOM05D002252 ORTHO05D002451 6.9e-08 60.5 44 63.6
GSVIVG01003975001 Vitis vinifera HOM05D002252 ORTHO05D002451 6.9e-08 60.5 44 65.9
AL5G16710 Arabidopsis lyrata HOM05D002252 ORTHO05D002451 9.0e-08 60.1 44 63.6
AT3G27380 Arabidopsis thaliana HOM05D002252 ORTHO05D002451 9.0e-08 60.1 44 63.6
CSS0006177 Camellia sinensis var. sinensis HOM05D002252 ORTHO05D002451 9.0e-08 60.1 44 63.6
CSS0012823 Camellia sinensis var. sinensis HOM05D002252 ORTHO05D002451 9.0e-08 60.1 44 63.6
CSS0016509 Camellia sinensis var. sinensis HOM05D002252 ORTHO05D002451 9.0e-08 60.1 44 63.6
CSS0025328 Camellia sinensis var. sinensis HOM05D002252 ORTHO05D002451 9.0e-08 60.1 44 63.6
CiPaw.03G048800 Carya illinoinensis HOM05D002252 ORTHO05D002451 9.0e-08 60.1 44 68.2
DCAR_021751 Daucus carota HOM05D002252 ORTHO05D002451 9.0e-08 60.1 44 65.9
HanXRQChr15g0487121 Helianthus annuus HOM05D002252 ORTHO05D002451 9.0e-08 60.1 44 63.6
Nn4g24840 Nelumbo nucifera HOM05D002252 ORTHO05D002451 9.0e-08 60.1 44 65.9
Solyc02g092730.4 Solanum lycopersicum HOM05D002252 ORTHO05D002451 9.0e-08 60.1 44 65.9
Zm00001eb261270 Zea mays HOM05D002252 ORTHO05D002451 9.0e-08 60.1 44 61.4
Cc06_g20970 Coffea canephora HOM05D002252 ORTHO05D002451 1.2e-07 59.7 44 63.6
Migut.H00043 Erythranthe guttata HOM05D002252 ORTHO05D002451 1.2e-07 59.7 44 61.4
Glyma.19G080600 Glycine max HOM05D002252 ORTHO05D002451 1.2e-07 59.7 44 65.9
HanXRQChr09g0255741 Helianthus annuus HOM05D002252 ORTHO05D002451 1.2e-07 59.7 44 65.9
MD09G1019100 Malus domestica HOM05D002252 ORTHO05D002451 1.2e-07 59.7 45 66.7
MD17G1159300 Malus domestica HOM05D002252 ORTHO05D002451 1.2e-07 59.7 45 66.7
Sc03g0007140 Simmondsia chinensis HOM05D002252 ORTHO05D002451 1.2e-07 59.7 44 61.4
Zm00001eb173490 Zea mays HOM05D002252 ORTHO05D002451 1.2e-07 59.7 44 61.4
Zm00001eb175570 Zea mays HOM05D002252 ORTHO05D002451 1.2e-07 59.7 44 61.4
EL10Ac9g20793 Beta vulgaris HOM05D002252 ORTHO05D002451 1.5e-07 59.3 44 61.4
AUR62025071 Chenopodium quinoa HOM05D002252 ORTHO05D002451 1.5e-07 59.3 44 61.4
Cc07_g20970 Coffea canephora HOM05D002252 ORTHO05D002451 1.5e-07 59.3 44 63.6
DCAR_011283 Daucus carota HOM05D002252 ORTHO05D002451 1.5e-07 59.3 44 61.4
MD17G1019700 Malus domestica HOM05D002252 ORTHO05D002451 1.5e-07 59.3 45 66.7
Nitab4.5_0000935g0060 Nicotiana tabacum HOM05D002252 ORTHO05D002451 1.5e-07 59.3 44 63.6
CAN.G473.47 Capsicum annuum HOM05D002252 ORTHO05D002451 2.0e-07 58.9 44 63.6
Solyc02g093680.3 Solanum lycopersicum HOM05D002252 ORTHO05D002451 2.0e-07 58.9 44 63.6
Sopen02g038310 Solanum pennellii HOM05D002252 ORTHO05D002451 2.0e-07 58.9 44 63.6
PGSC0003DMG400012624 Solanum tuberosum HOM05D002252 ORTHO05D002451 2.0e-07 58.9 44 63.6
Zm00001eb358070 Zea mays HOM05D002252 ORTHO05D002451 2.0e-07 58.9 44 61.4
MBI07_g07821_MAGBIO Magnolia biondii HOM05D002252 ORTHO05D002451 2.6e-07 58.5 44 63.6
Nitab4.5_0002158g0230 Nicotiana tabacum HOM05D002252 ORTHO05D002451 2.6e-07 58.5 44 63.6
Nitab4.5_0006942g0050 Nicotiana tabacum HOM05D002252 ORTHO05D002451 2.6e-07 58.5 44 63.6
Migut.K01430 Erythranthe guttata HOM05D002252 ORTHO05D002451 3.4e-07 58.2 44 61.4
ATR0824G060 Amborella trichopoda HOM05D002252 ORTHO05D002451 4.5e-07 57.8 44 65.9
Lj1g0000985 Lotus japonicus HOM05D002252 ORTHO05D002451 4.5e-07 57.8 44 61.4
Lj1g0023844 Lotus japonicus HOM05D002252 ORTHO05D002451 4.5e-07 57.8 44 61.4
MD17G1182200 Malus domestica HOM05D002252 ORTHO05D002451 4.5e-07 57.8 45 66.7
unitig_744.g24361 Utricularia gibba HOM05D002252 ORTHO05D002451 4.5e-07 57.8 44 61.4
Hma1.2p1_0818F.1_g223490 Hydrangea macrophylla HOM05D002252 ORTHO05D002451 5.8e-07 57.4 44 63.6
ECA232G0113 Erigeron canadensis HOM05D002252 ORTHO05D002451 7.6e-07 57.0 46 60.9
Glyma.16G066200 Glycine max HOM05D002252 ORTHO05D002451 7.6e-07 57.0 44 63.6
PGSC0003DMG400024973 Solanum tuberosum HOM05D002252 ORTHO05D002451 7.6e-07 57.0 40 67.5
Lj1g0008845 Lotus japonicus HOM05D002252 ORTHO05D002451 9.9e-07 56.6 44 59.1
Lj4g0000724 Lotus japonicus HOM05D002252 ORTHO05D002451 9.9e-07 56.6 44 59.1
Sopen02g037280 Solanum pennellii HOM05D002252 ORTHO05D002451 1.7e-06 55.8 44 61.4
Lsat_1_v5_gn_0_30740 Lactuca sativa HOM05D002252 ORTHO05D002451 2.9e-06 55.1 46 60.9
Hund13012 Selenicereus undatus HOM05D002252 ORTHO05D002451 3.8e-06 54.7 44 59.1
Lsat_1_v5_gn_4_184781 Lactuca sativa HOM05D002252 ORTHO05D002451 6.4e-06 53.9 46 60.9


User provided reference genes

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