Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN07G0113 Fragaria x ananassa HOM05D003241 ORTHO05D003812 4.7e-52 207.6 106 100.0
FvH4_4g15641 Fragaria vesca HOM05D003241 ORTHO05D003812 4.0e-51 204.5 106 99.1
FAN15G1779 Fragaria x ananassa HOM05D003241 ORTHO05D003812 4.0e-51 204.5 106 99.1
FAN20G2531 Fragaria x ananassa HOM05D003241 ORTHO05D003812 4.0e-51 204.5 106 99.1
FAN27G2894 Fragaria x ananassa HOM05D003241 ORTHO05D003812 4.0e-51 204.5 106 99.1
FAN17G1371 Fragaria x ananassa HOM05D003241 ORTHO05D003812 2.0e-50 202.2 106 98.1
RcHm_v2.0_Chr4g0416151 Rosa chinensis HOM05D003241 ORTHO05D003812 6.3e-49 197.2 106 96.2
RcHm_v2.0_Chr4g0416161 Rosa chinensis HOM05D003241 ORTHO05D003812 7.7e-47 190.3 105 93.3
arahy.Tifrunner.gnm1.ann1.61N80Q Arachis hypogaea HOM05D003241 ORTHO05D003812 9.5e-45 183.3 106 89.6
Glyma.07G220800 Glycine max HOM05D003241 ORTHO05D003812 9.5e-45 183.3 106 89.6
FAN12G3728 Fragaria x ananassa HOM05D003241 ORTHO05D003812 1.2e-44 183.0 93 98.9
MD13G1193700 Malus domestica HOM05D003241 ORTHO05D003812 1.6e-44 182.6 106 89.6
arahy.Tifrunner.gnm1.ann1.2W1DSR Arachis hypogaea HOM05D003241 ORTHO05D003812 2.1e-44 182.2 106 88.7
Prupe.1G014100 Prunus persica HOM05D003241 ORTHO05D003812 2.1e-44 182.2 106 89.6
Glyma.08G229600 Glycine max HOM05D003241 ORTHO05D003812 4.7e-44 181.0 106 88.7
Phvul.011G184800 Phaseolus vulgaris HOM05D003241 ORTHO05D003812 4.0e-43 177.9 106 86.8
Ca_13374_v3 Cicer arietinum L. HOM05D003241 ORTHO05D003812 6.8e-43 177.2 106 85.8
Gohir.A04G045600 Gossypium hirsutum HOM05D003241 ORTHO05D003812 6.8e-43 177.2 106 86.8
Gohir.D05G337200 Gossypium hirsutum HOM05D003241 ORTHO05D003812 6.8e-43 177.2 106 86.8
Gorai.009G361400 Gossypium raimondii HOM05D003241 ORTHO05D003812 6.8e-43 177.2 106 86.8
MD16G1194300 Malus domestica HOM05D003241 ORTHO05D003812 6.8e-43 177.2 106 87.7
Lalb_Chr03g0032261 Lupinus albus HOM05D003241 ORTHO05D003812 8.8e-43 176.8 104 87.5
Lalb_Chr19g0130441 Lupinus albus HOM05D003241 ORTHO05D003812 8.8e-43 176.8 104 87.5
GSVIVG01035173001 Vitis vinifera HOM05D003241 ORTHO05D003812 1.5e-42 176.0 106 85.8
TWI32G0731 Tripterygium wilfordii HOM05D003241 ORTHO05D003812 2.0e-42 175.6 106 85.8
Duzib268G1256 Durio zibethinus HOM05D003241 ORTHO05D003812 3.4e-42 174.9 106 85.8
Manes.16G074400 Manihot esculenta HOM05D003241 ORTHO05D003812 3.4e-42 174.9 106 84.9
Atru.chr4.2711 Acer truncatum HOM05D003241 ORTHO05D003812 4.4e-42 174.5 106 84.9
Cfa015650 Carpinus fangiana HOM05D003241 ORTHO05D003812 4.4e-42 174.5 104 86.5
Duzib213G0093 Durio zibethinus HOM05D003241 ORTHO05D003812 5.7e-42 174.1 106 85.8
Nn5g27739 Nelumbo nucifera HOM05D003241 ORTHO05D003812 9.8e-42 173.3 106 84.0
Haze_00894 Corylus avellana HOM05D003241 ORTHO05D003812 2.2e-41 172.2 104 85.6
MELO3C022204.2 Cucumis melo HOM05D003241 ORTHO05D003812 2.2e-41 172.2 101 86.1
CsaV3_5G040300 Cucumis sativus L. HOM05D003241 ORTHO05D003812 2.2e-41 172.2 101 86.1
ClCG08G000490 Citrullus lanatus HOM05D003241 ORTHO05D003812 2.8e-41 171.8 101 86.1
MBI18_g28212_MAGBIO Magnolia biondii HOM05D003241 ORTHO05D003812 2.8e-41 171.8 106 84.0
TPR.G2613 Trifolium pratense HOM05D003241 ORTHO05D003812 3.7e-41 171.4 106 83.0
CiPaw.02G097400 Carya illinoinensis HOM05D003241 ORTHO05D003812 4.9e-41 171.0 104 85.6
Ciclev10000233m.g Citrus clementina HOM05D003241 ORTHO05D003812 4.9e-41 171.0 107 83.2
Potri.001G082100 Populus trichocarpa HOM05D003241 ORTHO05D003812 6.3e-41 170.6 104 84.6
Lj3g0022607 Lotus japonicus HOM05D003241 ORTHO05D003812 1.4e-40 169.5 106 82.1
vmacro13976 Vaccinium macrocarpon HOM05D003241 ORTHO05D003812 1.4e-40 169.5 105 82.9
CAN.G321.38 Capsicum annuum HOM05D003241 ORTHO05D003812 2.4e-40 168.7 106 80.2
Cpa.g.sc115.47 Carica papaya HOM05D003241 ORTHO05D003812 2.4e-40 168.7 104 82.7
Eucgr.J03092 Eucalyptus grandis HOM05D003241 ORTHO05D003812 3.1e-40 168.3 106 82.1
Solyc11g008470.2 Solanum lycopersicum HOM05D003241 ORTHO05D003812 4.1e-40 167.9 106 80.2
Sopen11g004250 Solanum pennellii HOM05D003241 ORTHO05D003812 4.1e-40 167.9 106 80.2
Nitab4.5_0004385g0020 Nicotiana tabacum HOM05D003241 ORTHO05D003812 9.2e-40 166.8 106 81.1
Oeu011820.1 Olea europaea HOM05D003241 ORTHO05D003812 1.6e-39 166.0 106 79.2
Dinv19008 Davidia involucrata HOM05D003241 ORTHO05D003812 2.0e-39 165.6 104 82.7
DCAR_019828 Daucus carota HOM05D003241 ORTHO05D003812 2.7e-39 165.2 104 80.8
Medtr1g083910 Medicago truncatula HOM05D003241 ORTHO05D003812 4.5e-39 164.5 111 81.1
Nitab4.5_0004325g0020 Nicotiana tabacum HOM05D003241 ORTHO05D003812 4.5e-39 164.5 106 80.2
Actinidia29972 Actinidia chinensis HOM05D003241 ORTHO05D003812 5.9e-39 164.1 98 84.7
AT5G16780 Arabidopsis thaliana HOM05D003241 ORTHO05D003812 5.9e-39 164.1 105 81.0
EL10Ac6g15598 Beta vulgaris HOM05D003241 ORTHO05D003812 5.9e-39 164.1 106 81.1
Dinv09319 Davidia involucrata HOM05D003241 ORTHO05D003812 5.9e-39 164.1 104 81.7
AL6G27800 Arabidopsis lyrata HOM05D003241 ORTHO05D003812 1.3e-38 162.9 105 80.0
CARHR196380 Cardamine hirsuta HOM05D003241 ORTHO05D003812 1.3e-38 162.9 105 81.0
Sed0020388 Sechium edule HOM05D003241 ORTHO05D003812 1.7e-38 162.5 101 82.2
HanXRQChr09g0244631 Helianthus annuus HOM05D003241 ORTHO05D003812 2.3e-38 162.2 106 78.3
Carub.0006s1500 Capsella rubella HOM05D003241 ORTHO05D003812 2.9e-38 161.8 105 80.0
AUR62018246 Chenopodium quinoa HOM05D003241 ORTHO05D003812 3.8e-38 161.4 106 78.3
AUR62034840 Chenopodium quinoa HOM05D003241 ORTHO05D003812 3.8e-38 161.4 106 78.3
Thhalv10012684m.g Eutrema salsugineum HOM05D003241 ORTHO05D003812 6.6e-38 160.6 105 80.0
Lj2C819G2 Lonicera japonica HOM05D003241 ORTHO05D003812 6.6e-38 160.6 104 76.9
Lsat_1_v5_gn_1_54260 Lactuca sativa HOM05D003241 ORTHO05D003812 1.9e-37 159.1 103 78.6
Rhsim01G0112900 Rhododendron simsii HOM05D003241 ORTHO05D003812 1.9e-37 159.1 90 87.8
PGSC0003DMG400007426 Solanum tuberosum HOM05D003241 ORTHO05D003812 1.9e-37 159.1 106 76.4
QL06p002249 Quercus lobata HOM05D003241 ORTHO05D003812 2.5e-37 158.7 104 78.8
QL06p002393 Quercus lobata HOM05D003241 ORTHO05D003812 2.5e-37 158.7 104 78.8
A10p22440 Brassica napus HOM05D003241 ORTHO05D003812 3.3e-37 158.3 105 77.1
C09p60290 Brassica napus HOM05D003241 ORTHO05D003812 3.3e-37 158.3 105 77.1
BraA10t44303Z Brassica rapa HOM05D003241 ORTHO05D003812 3.3e-37 158.3 105 77.1
BcaC04g18848 Brassica carinata HOM05D003241 ORTHO05D003812 7.3e-37 157.1 105 77.1
Oeu058578.1 Olea europaea HOM05D003241 ORTHO05D003812 9.5e-37 156.8 106 78.3
Migut.J00827 Erythranthe guttata HOM05D003241 ORTHO05D003812 1.6e-36 156.0 108 76.9
SGA_v2.0_scaffold31G12724 Striga asiatica HOM05D003241 ORTHO05D003812 1.6e-36 156.0 94 83.0
ATR1098G045 Amborella trichopoda HOM05D003241 ORTHO05D003812 2.1e-36 155.6 104 76.0
ECA248G0833 Erigeron canadensis HOM05D003241 ORTHO05D003812 2.8e-36 155.2 106 75.5
BcaC04g18849 Brassica carinata HOM05D003241 ORTHO05D003812 3.6e-36 154.8 105 76.2
BolC9t58862H Brassica oleracea HOM05D003241 ORTHO05D003812 3.6e-36 154.8 105 76.2
SEGI_01763 Sequoiadendron giganteum HOM05D003241 ORTHO05D003812 3.6e-36 154.8 105 74.3
PGR031G3475 Punica granatum HOM05D003241 ORTHO05D003812 6.1e-36 154.1 106 78.3
Hund17599 Selenicereus undatus HOM05D003241 ORTHO05D003812 6.1e-36 154.1 104 77.9
Aa31LG11G12850 Aethionema arabicum HOM05D003241 ORTHO05D003812 2.3e-35 152.1 106 77.4
Lj2A813G14 Lonicera japonica HOM05D003241 ORTHO05D003812 5.2e-35 151.0 118 67.8
Thecc.07G135300 Theobroma cacao HOM05D003241 ORTHO05D003812 5.2e-35 151.0 89 85.4
VMungo1127G1632 Vigna mungo HOM05D003241 ORTHO05D003812 2.6e-34 148.7 82 92.7
HPP92_003413 Vanilla planifolia HOM05D003241 ORTHO05D008621 7.5e-34 147.1 93 79.6
SalBow6G5333 Salvia bowleyana HOM05D003241 ORTHO05D003812 1.3e-33 146.4 100 76.0
QL09p049212 Quercus lobata HOM05D003241 ORTHO05D003812 1.7e-33 146.0 89 83.1
TAR571G0002 Trochodendron aralioides HOM05D003241 ORTHO05D003812 2.2e-33 145.6 82 87.8
TAR625G1302 Trochodendron aralioides HOM05D003241 ORTHO05D003812 2.2e-33 145.6 82 87.8
SalBow6G1591 Salvia bowleyana HOM05D003241 ORTHO05D003812 2.9e-33 145.2 100 75.0
Peaxi162Scf00296g00721 Petunia axillaris HOM05D003241 ORTHO05D003812 8.3e-33 143.7 92 80.4
COL.COLO4_17461 Corchorus olitorius HOM05D003241 ORTHO05D003812 1.1e-32 143.3 81 90.1
Aqoxy4G03221 Aquilegia oxysepala HOM05D003241 ORTHO05D003812 7.8e-31 137.1 97 76.3
Mapoly0063s0006 Marchantia polymorpha HOM05D003241 ORTHO05D003812 2.3e-30 135.6 117 63.2
CDE03G0251 Ceratophyllum demersum HOM05D003241 ORTHO05D003812 1.5e-29 132.9 81 84.0
Pp3c15_10170 Physcomitrium patens HOM05D003241 ORTHO05D003812 3.3e-29 131.7 119 62.2
SMO361G0171 Selaginella moellendorffii HOM05D003241 ORTHO05D003812 3.3e-29 131.7 101 66.3
AagrBONN_evm.TU.Sc2ySwM_344.1153__1154 Anthoceros agrestis HOM05D003241 ORTHO05D003812 5.6e-29 131.0 118 62.7
unitig_749.g14191 Utricularia gibba HOM05D003241 ORTHO05D003812 6.2e-28 127.5 91 73.6
unitig_77.g31483 Utricularia gibba HOM05D003241 ORTHO05D003812 6.2e-28 127.5 91 73.6
CBR_g32002 Chara braunii HOM05D003241 ORTHO05D003812 4.0e-27 124.8 98 62.2
PSO013G0353 Papaver somniferum HOM05D003241 ORTHO05D003812 5.2e-27 124.4 94 72.3
PSO339G1389 Papaver somniferum HOM05D003241 ORTHO05D003812 5.2e-27 124.4 94 72.3
PSO063G3239 Papaver somniferum HOM05D003241 ORTHO05D003812 1.2e-26 123.2 94 71.3
PSO339G6261 Papaver somniferum HOM05D003241 ORTHO05D003812 1.2e-26 123.2 94 71.3
Zm00001eb140630 Zea mays HOM05D003241 ORTHO05D003812 1.2e-26 123.2 108 63.9
Os02g0511500 Oryza sativa ssp. japonica HOM05D003241 ORTHO05D003812 1.1e-24 116.7 108 63.0
TAR381G1550 Trochodendron aralioides HOM05D003241 ORTHO05D003812 4.6e-23 111.3 64 87.5
Medtr1g032020 Medicago truncatula HOM05D003241 ORTHO05D003812 3.3e-21 105.1 77 72.7
Medtr1g032350 Medicago truncatula HOM05D003241 ORTHO05D003812 3.3e-21 105.1 77 72.7
AagrBONN_evm.TU.Sc2ySwM_117.3043 Anthoceros agrestis HOM05D003241 ORTHO05D003812 1.6e-20 102.8 126 51.6
SalBow3G1087 Salvia bowleyana HOM05D003241 ORTHO05D003812 3.6e-20 101.7 66 77.3
vmacro00335 Vaccinium macrocarpon HOM05D003241 ORTHO05D003812 1.1e-19 100.1 72 73.6
AagrBONN_evm.TU.Sc2ySwM_344.222 Anthoceros agrestis HOM05D003241 ORTHO05D003812 4.1e-16 88.2 85 54.1
MD07G1289000 Malus domestica HOM05D003241 ORTHO05D003812 7.1e-16 87.4 66 69.7
QL03p023912 Quercus lobata HOM05D003241 ORTHO05D003812 8.1e-12 73.9 37 89.2
QL09p029974 Quercus lobata HOM05D003241 ORTHO05D003812 8.1e-12 73.9 37 89.2
QL93p0157_0007 Quercus lobata HOM05D003241 ORTHO05D003812 8.1e-12 73.9 37 89.2
PGSC0003DMG400024746 Solanum tuberosum HOM05D003241 ORTHO05D003812 5.2e-11 71.2 93 47.3
AagrBONN_evm.TU.Sc2ySwM_344.225 Anthoceros agrestis HOM05D003241 ORTHO05D003812 2.6e-10 68.9 44 70.5
Psat6g151960 Pisum sativum HOM05D003241 ORTHO05D003812 9.9e-10 67.0 52 73.1
COL.COLO4_13873 Corchorus olitorius HOM05D003241 ORTHO05D003812 2.2e-09 65.9 45 77.8
Lj1A444G10 Lonicera japonica HOM05D003241 ORTHO05D003812 8.4e-09 63.9 53 64.2
Lju445A0T13 Lonicera japonica HOM05D003241 ORTHO05D003812 8.4e-09 63.9 53 64.2
ECA248G0244 Erigeron canadensis HOM05D003241 ORTHO05D003812 1.4e-08 63.2 46 69.6
vmacro19775 Vaccinium macrocarpon HOM05D003241 ORTHO05D003812 1.9e-08 62.8 47 70.2
vmacro19776 Vaccinium macrocarpon HOM05D003241 ORTHO05D003812 9.2e-08 60.5 46 69.6
Lj6g0011042 Lotus japonicus HOM05D003241 ORTHO05D003812 5.1e-06 54.7 60 53.3
Sopen01g042940 Solanum pennellii HOM05D003241 ORTHO05D003812 6.6e-06 54.3 94 43.6


User provided reference genes

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