Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN06G2813 Fragaria x ananassa HOM05D006110 ORTHO05D007774 0.0e+00 1303.5 669 100.0
FvH4_7g03810 Fragaria vesca HOM05D006110 ORTHO05D007774 0.0e+00 1176.0 637 95.8
FAN10G4343 Fragaria x ananassa HOM05D006110 ORTHO05D007774 0.0e+00 1165.2 636 94.3
FAN03G2625 Fragaria x ananassa HOM05D006110 ORTHO05D007774 0.0e+00 1149.0 644 91.5
RcHm_v2.0_Chr1g0327151 Rosa chinensis HOM05D006110 ORTHO05D007774 0.0e+00 1108.2 638 88.9
Prupe.7G006200 Prunus persica HOM05D006110 ORTHO05D007774 1.4e-290 1002.7 639 80.8
Cfa010950 Carpinus fangiana HOM05D006110 ORTHO05D007774 2.0e-286 988.8 635 79.4
QL07p029279 Quercus lobata HOM05D006110 ORTHO05D007774 1.4e-282 976.1 636 78.3
CiPaw.06G056300 Carya illinoinensis HOM05D006110 ORTHO05D007774 6.8e-282 973.8 634 78.9
QL04p021435 Quercus lobata HOM05D006110 ORTHO05D007774 6.8e-282 973.8 636 78.1
Dinv11233 Davidia involucrata HOM05D006110 ORTHO05D007774 5.4e-279 964.1 609 79.3
Atru.chr12.1309 Acer truncatum HOM05D006110 ORTHO05D007774 8.6e-277 956.8 632 77.8
Manes.04G156400 Manihot esculenta HOM05D006110 ORTHO05D007774 5.6e-276 954.1 639 77.0
CANSAT56G0825 Cannabis sativa HOM05D006110 ORTHO05D007774 2.1e-275 952.2 646 76.3
GSVIVG01036611001 Vitis vinifera HOM05D006110 ORTHO05D007774 2.3e-274 948.7 634 77.4
GSVIVG01036631001 Vitis vinifera HOM05D006110 ORTHO05D007774 1.5e-273 946.0 634 77.1
Ciclev10000631m.g Citrus clementina HOM05D006110 ORTHO05D007774 5.8e-273 944.1 612 78.4
MD14G1003800 Malus domestica HOM05D006110 ORTHO05D007774 1.1e-271 939.9 639 77.5
Duzib106G1787 Durio zibethinus HOM05D006110 ORTHO05D007774 3.2e-271 938.3 650 75.5
Potri.001G031700 Populus trichocarpa HOM05D006110 ORTHO05D007774 3.2e-271 938.3 610 77.9
Haze_02994 Corylus avellana HOM05D006110 ORTHO05D007774 1.6e-270 936.0 647 74.3
COL.COLO4_06638 Corchorus olitorius HOM05D006110 ORTHO05D007774 3.5e-270 934.9 635 76.1
Potri.003G194000 Populus trichocarpa HOM05D006110 ORTHO05D007774 6.6e-269 930.6 613 76.5
Glyma.04G133800 Glycine max HOM05D006110 ORTHO05D007774 1.9e-268 929.1 634 74.6
VMungo1080G0231 Vigna mungo HOM05D006110 ORTHO05D007774 3.6e-267 924.9 634 74.8
CsaV3_5G023770 Cucumis sativus L. HOM05D006110 ORTHO05D007774 6.8e-266 920.6 641 74.6
Eucgr.E03954 Eucalyptus grandis HOM05D006110 ORTHO05D007774 8.9e-266 920.2 636 74.5
Lj3g0023685 Lotus japonicus HOM05D006110 ORTHO05D007774 1.2e-265 919.8 634 75.1
Sed0024249 Sechium edule HOM05D006110 ORTHO05D007774 1.2e-265 919.8 636 75.3
Phvul.005G004500 Phaseolus vulgaris HOM05D006110 ORTHO05D007774 1.5e-265 919.5 609 76.5
TPR.G7074 Trifolium pratense HOM05D006110 ORTHO05D007774 1.5e-265 919.5 613 76.2
MELO3C022813.2 Cucumis melo HOM05D006110 ORTHO05D007774 2.0e-265 919.1 641 74.4
arahy.Tifrunner.gnm1.ann1.Y0U2QZ Arachis hypogaea HOM05D006110 ORTHO05D007774 9.9e-265 916.8 634 74.8
MSTRG.16978 Avicennia marina HOM05D006110 ORTHO05D007774 1.3e-264 916.4 635 74.6
Psat5g221960 Pisum sativum HOM05D006110 ORTHO05D007774 4.9e-264 914.4 613 75.9
arahy.Tifrunner.gnm1.ann1.P4BN3A Arachis hypogaea HOM05D006110 ORTHO05D007774 2.4e-263 912.1 634 74.3
CAN.G134.27 Capsicum annuum HOM05D006110 ORTHO05D007774 5.6e-260 901.0 608 75.5
Rhsim07G0069200 Rhododendron simsii HOM05D006110 ORTHO05D007774 6.2e-259 897.5 674 69.7
TAR625G0603 Trochodendron aralioides HOM05D006110 ORTHO05D007774 6.2e-259 897.5 609 75.7
Gohir.A05G399300 Gossypium hirsutum HOM05D006110 ORTHO05D007774 8.1e-259 897.1 637 73.5
CSS0009585 Camellia sinensis var. sinensis HOM05D006110 ORTHO05D007774 1.4e-258 896.3 634 73.8
Gorai.012G019300 Gossypium raimondii HOM05D006110 ORTHO05D007774 1.4e-258 896.3 637 73.2
Actinidia07968 Actinidia chinensis HOM05D006110 ORTHO05D007774 6.8e-258 894.0 549 80.9
THA.LOC104826748 Tarenaya hassleriana HOM05D006110 ORTHO05D007774 8.9e-258 893.6 613 74.6
Peaxi162Scf00220g00411 Petunia axillaris HOM05D006110 ORTHO05D007774 1.2e-257 893.3 635 72.3
Solyc01g096600.4 Solanum lycopersicum HOM05D006110 ORTHO05D007774 1.2e-257 893.3 612 74.5
EL10Ac7g17197 Beta vulgaris HOM05D006110 ORTHO05D007774 1.7e-256 889.4 634 72.1
Sopen01g040330 Solanum pennellii HOM05D006110 ORTHO05D007774 3.8e-256 888.3 612 74.0
ECA233G5267 Erigeron canadensis HOM05D006110 ORTHO05D007774 4.9e-256 887.9 635 71.7
Sc17g0003940 Simmondsia chinensis HOM05D006110 ORTHO05D007774 1.7e-253 879.4 578 76.8
HanXRQChr02g0048711 Helianthus annuus HOM05D006110 ORTHO05D007774 3.0e-253 878.6 632 71.8
Gohir.D04G016600 Gossypium hirsutum HOM05D006110 ORTHO05D007774 9.6e-252 873.6 637 72.1
Lalb_Chr20g0109671 Lupinus albus HOM05D006110 ORTHO05D007774 1.8e-250 869.4 636 71.9
Lsat_1_v5_gn_6_13001 Lactuca sativa HOM05D006110 ORTHO05D007774 3.1e-250 868.6 557 78.1
Lalb_Chr20g0109811 Lupinus albus HOM05D006110 ORTHO05D007774 5.3e-250 867.8 636 71.9
Nn8g38623 Nelumbo nucifera HOM05D006110 ORTHO05D007774 1.5e-249 866.3 634 71.3
AL6G20270 Arabidopsis lyrata HOM05D006110 ORTHO05D007774 3.4e-249 865.1 612 72.5
MBI03_g05118_MAGBIO Magnolia biondii HOM05D006110 ORTHO05D007774 5.8e-249 864.4 614 72.6
AT5G09860 Arabidopsis thaliana HOM05D006110 ORTHO05D007774 9.9e-249 863.6 614 72.3
Aa31LG1G21560 Aethionema arabicum HOM05D006110 ORTHO05D007774 1.2e-246 856.7 639 70.1
Carub.0006s0829 Capsella rubella HOM05D006110 ORTHO05D007774 1.0e-245 853.6 613 72.1
Sabra01G0022800 Salix brachista HOM05D006110 ORTHO05D007774 1.3e-245 853.2 806 60.0
CARHR203490 Cardamine hirsuta HOM05D006110 ORTHO05D007774 6.6e-245 850.9 613 72.3
Migut.B01193 Erythranthe guttata HOM05D006110 ORTHO05D007774 1.9e-244 849.4 561 76.3
Sp6g33550 Schrenkiella parvula HOM05D006110 ORTHO05D007774 2.1e-243 845.9 614 71.3
COL.COLO4_19610 Corchorus olitorius HOM05D006110 ORTHO05D007774 4.8e-243 844.7 659 68.4
ATR0618G428 Amborella trichopoda HOM05D006110 ORTHO05D007774 1.1e-242 843.6 627 70.8
BcaB05g21524 Brassica carinata HOM05D006110 ORTHO05D007774 1.4e-242 843.2 611 71.0
A02p00200 Brassica napus HOM05D006110 ORTHO05D007774 1.4e-242 843.2 630 69.8
vmacro13769 Vaccinium macrocarpon HOM05D006110 ORTHO05D007774 2.4e-242 842.4 723 64.0
Aqoxy3G04239 Aquilegia oxysepala HOM05D006110 ORTHO05D007774 6.9e-242 840.9 608 72.0
Nn3g19142 Nelumbo nucifera HOM05D006110 ORTHO05D007774 3.4e-241 838.6 535 78.7
PGR031G3177 Punica granatum HOM05D006110 ORTHO05D007774 1.3e-240 836.6 601 72.0
Thhalv10013059m.g Eutrema salsugineum HOM05D006110 ORTHO05D007774 1.6e-238 829.7 611 71.4
BraA02t05004Z Brassica rapa HOM05D006110 ORTHO05D007774 2.7e-238 828.9 656 66.9
C02p04120 Brassica napus HOM05D006110 ORTHO05D007774 3.5e-238 828.6 641 67.9
PSO063G0799 Papaver somniferum HOM05D006110 ORTHO05D007774 5.1e-237 824.7 610 70.0
BolC2t06374H Brassica oleracea HOM05D006110 ORTHO05D007774 8.7e-237 823.9 645 67.3
PSO782G1399 Papaver somniferum HOM05D006110 ORTHO05D007774 1.1e-236 823.5 610 70.2
BcaC03g13281 Brassica carinata HOM05D006110 ORTHO05D007774 2.2e-232 809.3 623 67.7
CDE05G1199 Ceratophyllum demersum HOM05D006110 ORTHO05D007774 6.0e-230 801.2 636 67.0
Os03g0110400 Oryza sativa ssp. japonica HOM05D006110 ORTHO05D007774 1.2e-225 786.9 611 67.3
Zm00001eb000780 Zea mays HOM05D006110 ORTHO05D007774 4.5e-225 785.0 612 67.6
Ah.08g212940 Amaranthus hybridus HOM05D006110 ORTHO05D007774 3.9e-221 771.9 636 64.8
SalBow5G1256 Salvia bowleyana HOM05D006110 ORTHO05D007774 1.1e-220 770.4 627 66.5
Nitab4.5_0002838g0090 Nicotiana tabacum HOM05D006110 ORTHO05D007774 9.7e-220 767.3 545 72.8
Oeu014626.1 Olea europaea HOM05D006110 ORTHO05D007774 4.8e-219 765.0 545 73.6
AUR62033702 Chenopodium quinoa HOM05D006110 ORTHO05D007774 1.6e-214 750.0 765 55.6
SGA_v2.0_scaffold342G49409 Striga asiatica HOM05D006110 ORTHO05D007774 1.4e-210 736.9 667 62.7
unitig_26.g9755 Utricularia gibba HOM05D006110 ORTHO05D007774 3.0e-205 719.2 643 61.9
Thecc.10G142600 Theobroma cacao HOM05D006110 ORTHO05D007774 1.8e-202 709.9 480 75.8
SMO134G0202 Selaginella moellendorffii HOM05D006110 ORTHO05D007774 1.6e-201 706.8 568 64.3
Mapoly0007s0076 Marchantia polymorpha HOM05D006110 ORTHO05D007774 9.4e-199 697.6 605 61.0
AagrBONN_evm.TU.Sc2ySwM_228.3473 Anthoceros agrestis HOM05D006110 ORTHO05D007774 1.8e-197 693.3 549 63.6
AUR62036785 Chenopodium quinoa HOM05D006110 ORTHO05D007774 3.3e-196 689.1 634 60.3
AagrBONN_evm.TU.Sc2ySwM_228.3474 Anthoceros agrestis HOM05D006110 ORTHO05D007774 8.5e-192 674.5 528 64.8
Cc00_g06110 Coffea canephora HOM05D006110 ORTHO05D007774 1.2e-190 670.6 462 74.2
Pp3c2_4660 Physcomitrium patens HOM05D006110 ORTHO05D007774 5.4e-186 655.2 557 60.9
ClCG05G014210 Citrullus lanatus HOM05D006110 ORTHO05D007774 3.4e-180 636.0 474 70.5
TPR.G1403 Trifolium pratense HOM05D006110 ORTHO05D007774 5.2e-165 585.5 401 73.6
DCAR_022366 Daucus carota HOM05D006110 ORTHO05D007774 3.4e-140 503.1 406 67.2
HPP92_005051 Vanilla planifolia HOM05D006110 ORTHO05D007774 1.6e-134 484.2 348 72.4
Lj9C658T8 Lonicera japonica HOM05D006110 ORTHO05D007774 1.8e-133 480.7 294 84.4
Cpa.g.sc51.83 Carica papaya HOM05D006110 ORTHO05D007774 3.8e-131 473.0 288 78.8
SEGI_32708 Sequoiadendron giganteum HOM05D006110 ORTHO05D007774 2.1e-126 457.2 334 71.0
CBR_g45491 Chara braunii HOM05D006110 ORTHO05D007774 6.0e-121 439.1 543 46.2
Nitab4.5_0004168g0080 Nicotiana tabacum HOM05D006110 ORTHO05D007774 4.2e-106 389.8 375 59.5
Hund12548 Selenicereus undatus HOM05D006110 ORTHO05D007774 8.8e-96 355.5 252 70.2
Hund24435 Selenicereus undatus HOM05D006110 ORTHO05D007774 3.7e-94 350.1 283 66.1
HPP92_005075 Vanilla planifolia HOM05D006110 ORTHO05D007774 2.8e-86 323.9 254 64.6
Sed0017067 Sechium edule HOM05D006110 ORTHO05D007774 3.1e-85 320.5 207 78.7
Lj9A658T58 Lonicera japonica HOM05D006110 ORTHO05D007774 2.2e-70 271.2 224 61.2
PRCOL_00001172 Prasinoderma coloniale HOM05D006110 ORTHO05D007774 1.7e-67 261.5 470 35.3
CANSAT01G0073 Cannabis sativa HOM05D006110 ORTHO05D007774 1.0e-64 252.3 181 69.1
CANSAT01G1515 Cannabis sativa HOM05D006110 ORTHO05D007774 1.4e-56 225.3 108 93.5
Cc00_g06120 Coffea canephora HOM05D006110 ORTHO05D007774 4.0e-56 223.8 134 79.9
CDE05G0354 Ceratophyllum demersum HOM05D006110 ORTHO05D007774 3.2e-53 214.2 392 39.0
CDE05G3545 Ceratophyllum demersum HOM05D006110 ORTHO05D007774 1.5e-47 195.3 146 69.9
SEGI_24206 Sequoiadendron giganteum HOM05D006110 ORTHO05D007774 7.5e-47 193.0 175 58.3
Oeu014625.1 Olea europaea HOM05D006110 ORTHO05D007774 8.9e-40 169.5 158 63.3
SEGI_05467 Sequoiadendron giganteum HOM05D006110 ORTHO05D007774 1.7e-38 165.2 109 66.1
ClCG05G014240 Citrullus lanatus HOM05D006110 ORTHO05D007774 6.8e-32 143.3 190 50.5
Actinidia06221 Actinidia chinensis HOM05D006110 ORTHO05D007774 2.4e-29 134.8 177 50.3
Lj9C658T10 Lonicera japonica HOM05D006110 ORTHO05D007774 3.4e-23 114.4 66 75.8
Cre16.g695300 Chlamydomonas reinhardtii HOM05D006110 ORTHO05D007774 7.8e-20 103.2 285 28.1
QL04p021235 Quercus lobata HOM05D006110 ORTHO05D011410 3.7e-09 67.8 55 72.7


User provided reference genes

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