Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN05G2137 Fragaria x ananassa HOM05D006077 ORTHO05D007499 2.3e-66 255.4 123 100.0
FAN09G3570 Fragaria x ananassa HOM05D006077 ORTHO05D007499 5.4e-44 181.0 123 77.2
FvH4_6g34660 Fragaria vesca HOM05D006077 ORTHO05D007499 2.7e-43 178.7 123 76.4
FAN14G4463 Fragaria x ananassa HOM05D006077 ORTHO05D007499 2.7e-43 178.7 123 76.4
RcHm_v2.0_Chr2g0145211 Rosa chinensis HOM05D006077 ORTHO05D007499 3.5e-43 178.3 123 76.4
RcHm_v2.0_Chr3g0490611 Rosa chinensis HOM05D006077 ORTHO05D007499 1.5e-41 172.9 123 74.0
RcHm_v2.0_Chr5g0053491 Rosa chinensis HOM05D006077 ORTHO05D007499 4.3e-41 171.4 123 74.8
Thecc.06G119600 Theobroma cacao HOM05D006077 ORTHO05D007499 6.2e-40 167.5 119 72.3
Prupe.3G042200 Prunus persica HOM05D006077 ORTHO05D007499 1.1e-39 166.8 123 70.7
CANSAT64G0122 Cannabis sativa HOM05D006077 ORTHO05D007499 1.8e-39 166.0 122 69.7
GSVIVG01016766001 Vitis vinifera HOM05D006077 ORTHO05D007499 1.8e-39 166.0 120 70.8
CANSAT64G2602 Cannabis sativa HOM05D006077 ORTHO05D007499 2.4e-39 165.6 121 70.2
MD09G1183900 Malus domestica HOM05D006077 ORTHO05D007499 9.0e-39 163.7 123 69.1
PSO421G0038 Papaver somniferum HOM05D006077 ORTHO05D007499 1.2e-38 163.3 120 70.8
CDE11G1182 Ceratophyllum demersum HOM05D006077 ORTHO05D007499 3.4e-38 161.8 122 66.4
Gohir.D04G009800 Gossypium hirsutum HOM05D006077 ORTHO05D007499 3.4e-38 161.8 119 70.6
Gorai.012G011600 Gossypium raimondii HOM05D006077 ORTHO05D007499 3.4e-38 161.8 119 70.6
TAR636G2213 Trochodendron aralioides HOM05D006077 ORTHO05D007499 3.4e-38 161.8 120 70.0
ECA232G1087 Erigeron canadensis HOM05D006077 ORTHO05D007499 4.5e-38 161.4 123 67.5
Lj3g0010947 Lotus japonicus HOM05D006077 ORTHO05D007499 5.8e-38 161.0 121 66.9
Rhsim08G0238900 Rhododendron simsii HOM05D006077 ORTHO05D007499 5.8e-38 161.0 120 69.2
CSS0011852 Camellia sinensis var. sinensis HOM05D006077 ORTHO05D007499 7.6e-38 160.6 120 69.2
CiPaw.02G136000 Carya illinoinensis HOM05D006077 ORTHO05D007499 7.6e-38 160.6 120 67.5
PSO063G4040 Papaver somniferum HOM05D006077 ORTHO05D007499 7.6e-38 160.6 121 69.4
Haze_16030 Corylus avellana HOM05D006077 ORTHO05D007499 9.9e-38 160.2 119 68.9
CAN.G1368.2 Capsicum annuum HOM05D006077 ORTHO05D007499 1.3e-37 159.8 114 70.2
Glyma.16G007300 Glycine max HOM05D006077 ORTHO05D007499 1.3e-37 159.8 121 66.9
Gohir.A05G405800 Gossypium hirsutum HOM05D006077 ORTHO05D007499 1.3e-37 159.8 119 69.7
Lalb_Chr01g0013591 Lupinus albus HOM05D006077 ORTHO05D007499 1.3e-37 159.8 120 68.3
Psat4g182400 Pisum sativum HOM05D006077 ORTHO05D007499 1.3e-37 159.8 119 68.9
Phvul.010G130300 Phaseolus vulgaris HOM05D006077 ORTHO05D007499 2.2e-37 159.1 121 67.8
TPR.G32491 Trifolium pratense HOM05D006077 ORTHO05D007499 2.2e-37 159.1 119 68.1
Actinidia26028 Actinidia chinensis HOM05D006077 ORTHO05D007499 2.9e-37 158.7 120 68.3
Dinv37869 Davidia involucrata HOM05D006077 ORTHO05D007499 2.9e-37 158.7 120 68.3
Aqoxy7G01092 Aquilegia oxysepala HOM05D006077 ORTHO05D007499 3.8e-37 158.3 119 68.9
TWI75G1673 Tripterygium wilfordii HOM05D006077 ORTHO05D007499 3.8e-37 158.3 121 67.8
Carub.0001s4344 Capsella rubella HOM05D006077 ORTHO05D007499 6.4e-37 157.5 120 67.5
Hma1.2p1_0291F.1_g115130 Hydrangea macrophylla HOM05D006077 ORTHO05D007499 6.4e-37 157.5 123 65.9
TWI79G1574 Tripterygium wilfordii HOM05D006077 ORTHO05D007499 8.4e-37 157.1 119 68.9
VMungo0331G1077 Vigna mungo HOM05D006077 ORTHO05D007499 8.4e-37 157.1 121 66.1
Glyma.07G038100 Glycine max HOM05D006077 ORTHO05D007499 1.1e-36 156.8 121 66.1
Solyc12g049310.2 Solanum lycopersicum HOM05D006077 ORTHO05D007499 1.1e-36 156.8 114 69.3
Sopen12g023790 Solanum pennellii HOM05D006077 ORTHO05D007499 1.1e-36 156.8 114 69.3
ATR0598G320 Amborella trichopoda HOM05D006077 ORTHO05D007499 1.4e-36 156.4 119 68.1
Migut.D00939 Erythranthe guttata HOM05D006077 ORTHO05D007499 1.4e-36 156.4 113 70.8
Sc15g0000510 Simmondsia chinensis HOM05D006077 ORTHO05D007499 1.4e-36 156.4 120 67.5
CiPaw.01G218900 Carya illinoinensis HOM05D006077 ORTHO05D007499 2.4e-36 155.6 121 68.6
Peaxi162Scf00177g00511 Petunia axillaris HOM05D006077 ORTHO05D007499 2.4e-36 155.6 114 69.3
THA.LOC104822655 Tarenaya hassleriana HOM05D006077 ORTHO05D007499 4.2e-36 154.8 120 67.5
AT1G54210 Arabidopsis thaliana HOM05D006077 ORTHO05D007499 7.1e-36 154.1 120 65.8
Medtr8g020500 Medicago truncatula HOM05D006077 ORTHO05D007499 9.3e-36 153.7 111 70.3
arahy.Tifrunner.gnm1.ann1.G5XP6S Arachis hypogaea HOM05D006077 ORTHO05D007499 1.2e-35 153.3 119 65.5
arahy.Tifrunner.gnm1.ann1.G7AU8E Arachis hypogaea HOM05D006077 ORTHO05D007499 1.2e-35 153.3 119 65.5
CARHR044580 Cardamine hirsuta HOM05D006077 ORTHO05D007499 1.6e-35 152.9 120 66.7
Hund05739 Selenicereus undatus HOM05D006077 ORTHO05D007499 1.6e-35 152.9 120 66.7
BcaB07g33246 Brassica carinata HOM05D006077 ORTHO05D007499 2.7e-35 152.1 120 66.7
BolC5t34043H Brassica oleracea HOM05D006077 ORTHO05D007499 2.7e-35 152.1 123 64.2
Cc00_g21000 Coffea canephora HOM05D006077 ORTHO05D007499 2.7e-35 152.1 113 68.1
Thhalv10011896m.g Eutrema salsugineum HOM05D006077 ORTHO05D007499 3.5e-35 151.8 120 66.7
Hma1.2p1_0496F.1_g166240 Hydrangea macrophylla HOM05D006077 ORTHO05D007499 3.5e-35 151.8 110 69.1
SalBow6G4082 Salvia bowleyana HOM05D006077 ORTHO05D007499 3.5e-35 151.8 113 69.0
SalBow6G4389 Salvia bowleyana HOM05D006077 ORTHO05D007499 3.5e-35 151.8 113 69.0
Ah.08g216780 Amaranthus hybridus HOM05D006077 ORTHO05D007499 6.0e-35 151.0 120 65.0
Lsat_1_v5_gn_4_92920 Lactuca sativa HOM05D006077 ORTHO05D007499 7.9e-35 150.6 120 65.0
Manes.11G020500 Manihot esculenta HOM05D006077 ORTHO05D007499 7.9e-35 150.6 122 62.3
AL1G62920 Arabidopsis lyrata HOM05D006077 ORTHO05D007499 1.0e-34 150.2 115 67.0
Carub.0003s1355 Capsella rubella HOM05D006077 ORTHO05D007499 1.0e-34 150.2 123 63.4
Sp3g12220 Schrenkiella parvula HOM05D006077 ORTHO05D007499 1.3e-34 149.8 120 64.2
AL3G26170 Arabidopsis lyrata HOM05D006077 ORTHO05D007499 2.3e-34 149.1 120 64.2
MELO3C025809.2 Cucumis melo HOM05D006077 ORTHO05D007499 2.3e-34 149.1 123 61.8
Eucgr.F03177 Eucalyptus grandis HOM05D006077 ORTHO05D007499 3.0e-34 148.7 120 64.2
BcaC05g29136 Brassica carinata HOM05D006077 ORTHO05D007499 5.1e-34 147.9 120 64.2
C05p53730 Brassica napus HOM05D006077 ORTHO05D007499 5.1e-34 147.9 120 64.2
ClCG07G014030 Citrullus lanatus HOM05D006077 ORTHO05D007499 6.7e-34 147.5 123 61.0
Ciclev10026605m.g Citrus clementina HOM05D006077 ORTHO05D007499 6.7e-34 147.5 123 61.8
CsaV3_3G043520 Cucumis sativus L. HOM05D006077 ORTHO05D007499 6.7e-34 147.5 123 61.0
A06p00460 Brassica napus HOM05D006077 ORTHO05D007499 1.1e-33 146.7 131 61.8
A05p35440 Brassica napus HOM05D006077 ORTHO05D007499 1.5e-33 146.4 118 63.6
BcaB06g25414 Brassica carinata HOM05D006077 ORTHO05D007499 1.9e-33 146.0 120 62.5
BcaB07g33245 Brassica carinata HOM05D006077 ORTHO05D007499 2.5e-33 145.6 111 68.5
BcaC08g43600 Brassica carinata HOM05D006077 ORTHO05D007499 2.5e-33 145.6 111 68.5
C06p09980 Brassica napus HOM05D006077 ORTHO05D007499 2.5e-33 145.6 111 68.5
BolC6t36071H Brassica oleracea HOM05D006077 ORTHO05D007499 3.3e-33 145.2 123 64.2
BraA06t23260Z Brassica rapa HOM05D006077 ORTHO05D007499 3.3e-33 145.2 123 64.2
Sed0008411 Sechium edule HOM05D006077 ORTHO05D007499 4.3e-33 144.8 123 61.0
SalBow6G7202 Salvia bowleyana HOM05D006077 ORTHO05D007499 9.6e-33 143.7 120 65.0
Potri.001G169700 Populus trichocarpa HOM05D006077 ORTHO05D007499 2.1e-32 142.5 119 60.5
Potri.003G064300 Populus trichocarpa HOM05D006077 ORTHO05D007499 2.8e-32 142.1 120 60.0
Aa31LG8G1170 Aethionema arabicum HOM05D006077 ORTHO05D007499 3.7e-32 141.7 128 61.7
BraA05t22354Z Brassica rapa HOM05D006077 ORTHO05D007499 3.7e-32 141.7 111 66.7
Zm00001eb256700 Zea mays HOM05D006077 ORTHO05D007499 8.2e-32 140.6 115 62.6
Nn4g24846 Nelumbo nucifera HOM05D006077 ORTHO05D007499 1.4e-31 139.8 112 66.1
AagrBONN_evm.TU.Sc2ySwM_228.485 Anthoceros agrestis HOM05D006077 ORTHO05D007499 1.8e-31 139.4 123 58.5
QL05p007703 Quercus lobata HOM05D006077 ORTHO05D007499 2.4e-31 139.0 204 45.6
Sed0025034 Sechium edule HOM05D006077 ORTHO05D007499 2.4e-31 139.0 123 58.5
Mapoly0025s0134 Marchantia polymorpha HOM05D006077 ORTHO05D007499 3.1e-31 138.7 116 61.2
Pp3c4_29920 Physcomitrium patens HOM05D006077 ORTHO05D007499 5.3e-31 137.9 118 58.5
Os06g0205000 Oryza sativa ssp. japonica HOM05D006077 ORTHO05D007499 7.6e-30 134.0 113 58.4
FAN02G4125 Fragaria x ananassa HOM05D006077 ORTHO05D007499 8.4e-29 130.6 127 60.6
unitig_699.g19648 Utricularia gibba HOM05D002868 ORTHO05D003477 6.0e-27 124.4 102 62.7
Manes.04G144301 Manihot esculenta HOM05D006077 ORTHO05D007499 7.9e-27 124.0 108 58.3
CANSAT25G1718 Cannabis sativa HOM05D006077 ORTHO05D007499 3.0e-26 122.1 102 63.7
vmacro15032 Vaccinium macrocarpon HOM05D006077 ORTHO05D007499 6.7e-26 120.9 104 64.4
COL.COLO4_30761 Corchorus olitorius HOM05D006077 ORTHO05D007499 2.5e-25 119.0 99 63.6
RcHm_v2.0_Chr5g0040601 Rosa chinensis HOM05D006077 ORTHO05D007499 3.3e-25 118.6 64 84.4
Duzib235G0120 Durio zibethinus HOM05D006077 ORTHO05D007499 9.7e-25 117.1 99 63.6
SGA_v2.0_scaffold4G02063 Striga asiatica HOM05D006077 ORTHO05D007499 2.2e-24 115.9 110 57.3
Oeu015484.1 Olea europaea HOM05D006077 ORTHO05D007499 1.8e-23 112.8 93 64.5
Duzib192G0164 Durio zibethinus HOM05D006077 ORTHO05D007499 3.1e-23 112.1 99 60.6
EL10Ac7g16407 Beta vulgaris HOM05D006077 ORTHO05D007499 5.3e-23 111.3 100 59.0
CARHR088790 Cardamine hirsuta HOM05D006077 ORTHO05D007499 4.5e-22 108.2 101 58.4
AUR62009882 Chenopodium quinoa HOM05D006077 ORTHO05D007499 7.6e-22 107.5 94 58.5
Nitab4.5_0000189g0210 Nicotiana tabacum HOM05D006077 ORTHO05D007499 7.6e-22 107.5 114 51.8
Nitab4.5_0001199g0100 Nicotiana tabacum HOM05D006077 ORTHO05D007499 7.6e-22 107.5 114 51.8
Sabra03G0038000 Salix brachista HOM05D006077 ORTHO05D007499 6.5e-21 104.4 100 54.0
CBR_g34185 Chara braunii HOM05D000019 ORTHO05D001702 8.5e-21 104.0 100 54.0
HPP92_019155 Vanilla planifolia HOM05D006077 ORTHO05D007499 8.5e-21 104.0 99 56.6
Thhalv10021863m.g Eutrema salsugineum HOM05D006077 ORTHO05D007499 3.2e-20 102.1 120 48.3
PGSC0003DMG400011604 Solanum tuberosum HOM05D006077 ORTHO05D007499 2.5e-17 92.4 45 91.1
SMO364G0450 Selaginella moellendorffii HOM05D006077 ORTHO05D007499 2.8e-16 89.0 113 41.6
PRCOL_00003774 Prasinoderma coloniale HOM05D006077 ORTHO05D007499 8.2e-16 87.4 112 40.2
MCO16G375 Micromonas commoda HOM05D006077 ORTHO05D007499 4.1e-15 85.1 117 44.4
DCAR_022696 Daucus carota HOM05D006077 ORTHO05D007499 2.2e-13 79.3 43 83.7
Atru.chr1.3943 Acer truncatum HOM05D006077 ORTHO05D007499 8.5e-13 77.4 48 77.1
CDE05G1235 Ceratophyllum demersum HOM05D006077 ORTHO05D007499 3.2e-12 75.5 87 50.6
CSS0028385 Camellia sinensis var. sinensis HOM05D006077 ORTHO05D007499 5.5e-12 74.7 79 54.4
Cre12.g557000 Chlamydomonas reinhardtii HOM05D006077 ORTHO05D007499 8.8e-10 67.4 113 35.4
AT3G13970 Arabidopsis thaliana HOM05D006077 ORTHO05D007499 1.5e-09 66.6 81 45.7
FAN20G2981 Fragaria x ananassa HOM05D006077 ORTHO05D007499 1.8e-07 59.7 66 54.5


User provided reference genes

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