Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN05G2069 Fragaria x ananassa HOM05D001849 ORTHO05D004075 0.0e+00 2337.0 1358 100.0
FAN14G5889 Fragaria x ananassa HOM05D001849 ORTHO05D004075 0.0e+00 2247.2 1359 94.7
FAN09G3103 Fragaria x ananassa HOM05D001849 ORTHO05D004075 0.0e+00 2208.7 1395 92.6
FvH4_6g35180 Fragaria vesca HOM05D001849 ORTHO05D004075 0.0e+00 2187.1 1362 93.8
FAN02G1816 Fragaria x ananassa HOM05D001849 ORTHO05D004075 0.0e+00 2169.0 1382 91.9
RcHm_v2.0_Chr2g0146441 Rosa chinensis HOM05D001849 ORTHO05D004075 0.0e+00 1936.4 1381 83.9
Prupe.3G037300 Prunus persica HOM05D001849 ORTHO05D004075 0.0e+00 1517.3 1423 70.1
MD09G1178000 Malus domestica HOM05D001849 ORTHO05D004075 0.0e+00 1482.2 1417 68.1
MD17G1148700 Malus domestica HOM05D001849 ORTHO05D004075 0.0e+00 1470.3 1414 65.9
CiPaw.01G215800 Carya illinoinensis HOM05D001849 ORTHO05D004075 0.0e+00 1315.8 1409 62.0
CiPaw.02G133700 Carya illinoinensis HOM05D001849 ORTHO05D004075 0.0e+00 1278.8 1420 61.4
Cfa003510 Carpinus fangiana HOM05D001849 ORTHO05D004075 0.0e+00 1251.1 1410 57.4
Thecc.06G125000 Theobroma cacao HOM05D001849 ORTHO05D004075 0.0e+00 1235.7 1436 60.9
QL05p003642 Quercus lobata HOM05D001849 ORTHO05D004075 0.0e+00 1233.4 1465 59.2
TWI14G1157 Tripterygium wilfordii HOM05D001849 ORTHO05D004075 0.0e+00 1218.0 1418 53.8
Duzib192G0748 Durio zibethinus HOM05D001849 ORTHO05D004075 0.0e+00 1217.2 1433 59.4
Dinv37967 Davidia involucrata HOM05D001849 ORTHO05D004075 0.0e+00 1203.3 1417 57.2
COL.COLO4_30798 Corchorus olitorius HOM05D001849 ORTHO05D004075 0.0e+00 1203.0 1430 58.7
Manes.04G148200 Manihot esculenta HOM05D001849 ORTHO05D004075 0.0e+00 1201.4 1438 59.5
TWI59G0043 Tripterygium wilfordii HOM05D001849 ORTHO05D004075 0.0e+00 1187.2 1422 54.4
Potri.001G165800 Populus trichocarpa HOM05D001849 ORTHO05D004075 0.0e+00 1179.1 1424 56.8
Ciclev10024725m.g Citrus clementina HOM05D001849 ORTHO05D004075 0.0e+00 1165.2 1356 59.5
Hma1.2p1_0229F.1_g096780 Hydrangea macrophylla HOM05D001849 ORTHO05D004075 0.0e+00 1154.0 1426 56.2
Duzib235G1365 Durio zibethinus HOM05D001849 ORTHO05D004075 0.0e+00 1143.3 1417 58.1
Sabra01G0127500 Salix brachista HOM05D001849 ORTHO05D004075 0.0e+00 1139.8 1406 55.1
CANSAT56G4149 Cannabis sativa HOM05D001849 ORTHO05D004075 0.0e+00 1135.9 1440 58.1
Rhsim08G0241300 Rhododendron simsii HOM05D001849 ORTHO05D004689 0.0e+00 1130.2 1492 54.2
Gohir.D06G149500 Gossypium hirsutum HOM05D001849 ORTHO05D004075 0.0e+00 1127.9 1431 54.4
Gorai.010G174200 Gossypium raimondii HOM05D001849 ORTHO05D004075 0.0e+00 1127.9 1425 54.6
CSS0013236 Camellia sinensis var. sinensis HOM05D001849 ORTHO05D004075 0.0e+00 1117.1 1425 55.9
CSS0036669 Camellia sinensis var. sinensis HOM05D001849 ORTHO05D004075 0.0e+00 1115.9 1425 55.9
Lj3g0013610 Lotus japonicus HOM05D001849 ORTHO05D004075 0.0e+00 1115.5 1407 55.1
Ca_23413_v3 Cicer arietinum L. HOM05D001849 ORTHO05D004075 0.0e+00 1111.3 1411 53.7
Gohir.A05G138700 Gossypium hirsutum HOM05D001849 ORTHO05D004075 0.0e+00 1109.0 1440 56.6
Lalb_Chr17g0343441 Lupinus albus HOM05D001849 ORTHO05D004075 0.0e+00 1105.5 1407 53.7
DCAR_026425 Daucus carota HOM05D001849 ORTHO05D004075 0.0e+00 1105.1 1430 54.5
Gohir.D05G140900 Gossypium hirsutum HOM05D001849 ORTHO05D004075 0.0e+00 1104.7 1434 57.5
Lalb_Chr04g0253751 Lupinus albus HOM05D001849 ORTHO05D004075 0.0e+00 1103.6 1415 54.6
arahy.Tifrunner.gnm1.ann1.M8Z2DU Arachis hypogaea HOM05D001849 ORTHO05D004075 0.0e+00 1102.8 1434 54.5
VMungo0331G0811 Vigna mungo HOM05D001849 ORTHO05D004075 0.0e+00 1098.6 1413 52.7
Gorai.009G145100 Gossypium raimondii HOM05D001849 ORTHO05D004075 0.0e+00 1098.2 1456 56.9
Medtr8g021980 Medicago truncatula HOM05D001849 ORTHO05D004075 0.0e+00 1094.7 1402 54.1
Phvul.010G125600 Phaseolus vulgaris HOM05D001849 ORTHO05D004075 0.0e+00 1094.3 1415 53.3
arahy.Tifrunner.gnm1.ann1.NEIN3W Arachis hypogaea HOM05D001849 ORTHO05D004075 0.0e+00 1093.2 1428 54.0
Glyma.07G042100 Glycine max HOM05D001849 ORTHO05D004075 0.0e+00 1090.9 1433 54.8
Glyma.16G010400 Glycine max HOM05D001849 ORTHO05D004075 0.0e+00 1088.6 1411 54.2
MELO3C024333.2 Cucumis melo HOM05D001849 ORTHO05D004075 0.0e+00 1085.9 1440 54.1
Sed0014139 Sechium edule HOM05D001849 ORTHO05D004075 0.0e+00 1085.9 1417 52.0
Lalb_Chr10g0101311 Lupinus albus HOM05D001849 ORTHO05D004075 0.0e+00 1084.3 1418 52.7
CsaV3_7G034240 Cucumis sativus L. HOM05D001849 ORTHO05D004075 0.0e+00 1081.2 1430 53.6
Sopen06g022460 Solanum pennellii HOM05D001849 ORTHO05D004075 0.0e+00 1079.7 1429 53.4
CAN.G1743.7 Capsicum annuum HOM05D001849 ORTHO05D004075 4.6e-309 1065.1 1416 53.2
Psat4g166800 Pisum sativum HOM05D001849 ORTHO05D004075 1.3e-308 1063.5 1394 52.2
PGR102G3102 Punica granatum HOM05D001849 ORTHO05D004075 2.3e-300 1036.2 1435 51.4
Dinv37845 Davidia involucrata HOM05D001849 ORTHO05D004075 1.5e-299 1033.5 1233 59.4
SalBow6G5403 Salvia bowleyana HOM05D001849 ORTHO05D004075 3.1e-297 1025.8 1416 52.6
TPR.G29998 Trifolium pratense HOM05D001849 ORTHO05D004075 9.8e-296 1020.8 1401 51.7
Sabra03G0040600 Salix brachista HOM05D001849 ORTHO05D004075 8.3e-295 1017.7 1554 50.0
Gohir.A06G143000 Gossypium hirsutum HOM05D001849 ORTHO05D004075 4.1e-294 1015.4 1419 52.0
Aqoxy7G04079 Aquilegia oxysepala HOM05D001849 ORTHO05D004075 2.7e-293 1012.7 1409 50.0
Nn8g38564 Nelumbo nucifera HOM05D001849 ORTHO05D004075 1.9e-291 1006.5 1431 56.0
MSTRG.22534 Avicennia marina HOM05D001849 ORTHO05D004075 7.6e-288 994.6 1407 51.3
Potri.003G069200 Populus trichocarpa HOM05D001849 ORTHO05D004075 2.4e-286 989.6 1371 53.0
Lj9C535T9 Lonicera japonica HOM05D001849 ORTHO05D004075 7.1e-286 988.0 1463 55.4
Hund18671 Selenicereus undatus HOM05D001849 ORTHO05D004075 7.1e-286 988.0 1417 47.9
Nitab4.5_0002716g0060 Nicotiana tabacum HOM05D001849 ORTHO05D004075 6.2e-282 974.9 1261 50.9
THA.LOC104812264 Tarenaya hassleriana HOM05D001849 ORTHO05D004075 2.7e-277 959.5 1281 50.1
Cpa.g.sc25.150 Carica papaya HOM05D001849 ORTHO05D004075 1.7e-276 956.8 1276 56.4
Sc15g0000590 Simmondsia chinensis HOM05D001849 ORTHO05D004075 1.5e-275 953.7 1420 48.3
Thhalv10018006m.g Eutrema salsugineum HOM05D001849 ORTHO05D004075 3.8e-271 939.1 1474 47.2
Aa31LG4G2730 Aethionema arabicum HOM05D001849 ORTHO05D004075 1.8e-265 920.2 1454 48.3
GSVIVG01016716001 Vitis vinifera HOM05D001849 ORTHO05D004075 5.8e-264 915.2 1096 52.4
A07p38580 Brassica napus HOM05D001849 ORTHO05D004075 1.1e-262 911.0 1452 47.3
Nitab4.5_0003137g0070 Nicotiana tabacum HOM05D001849 ORTHO05D004075 4.2e-262 909.1 982 53.4
AT1G72390 Arabidopsis thaliana HOM05D001849 ORTHO05D004075 9.3e-262 907.9 1434 47.7
EL10Ac7g16445 Beta vulgaris HOM05D001849 ORTHO05D004075 9.3e-262 907.9 1385 46.4
BraA07t31416Z Brassica rapa HOM05D001849 ORTHO05D004075 2.7e-261 906.4 1465 46.9
AL2G32060 Arabidopsis lyrata HOM05D001849 ORTHO05D004075 6.0e-261 905.2 1434 47.7
CARHR065290 Cardamine hirsuta HOM05D001849 ORTHO05D004075 1.9e-259 900.2 1449 45.7
BolC6t39719H Brassica oleracea HOM05D001849 ORTHO05D004075 5.6e-259 898.7 1478 46.4
C06p46750 Brassica napus HOM05D001849 ORTHO05D004075 1.1e-257 894.4 1476 46.3
Carub.0002s1924 Capsella rubella HOM05D001849 ORTHO05D004075 1.1e-257 894.4 1436 45.8
SalBow6G6581 Salvia bowleyana HOM05D001849 ORTHO05D004075 1.8e-257 893.6 1298 47.3
ClCG09G001150 Citrullus lanatus HOM05D001849 ORTHO05D004075 2.0e-256 890.2 958 55.7
Cc04_g01030 Coffea canephora HOM05D001849 ORTHO05D004075 5.8e-256 888.6 1212 50.8
BcaC03g15374 Brassica carinata HOM05D001849 ORTHO05D004075 2.5e-251 873.2 1423 45.5
C02p29880 Brassica napus HOM05D001849 ORTHO05D004075 2.5e-251 873.2 1423 45.5
BolC2t09038H Brassica oleracea HOM05D001849 ORTHO05D004075 1.3e-250 870.9 1425 45.3
BraA02t06845Z Brassica rapa HOM05D001849 ORTHO05D004075 1.2e-248 864.4 1437 45.0
A02p17980 Brassica napus HOM05D001849 ORTHO05D004075 4.5e-248 862.4 1429 45.1
Peaxi162Scf00207g01546 Petunia axillaris HOM05D001849 ORTHO05D004075 2.1e-245 853.6 919 53.8
Solyc06g063010.4 Solanum lycopersicum HOM05D001849 ORTHO05D004075 2.7e-245 853.2 972 51.9
Oeu000390.1 Olea europaea HOM05D001849 ORTHO05D004075 2.3e-244 850.1 1457 42.8
Sp5g27470 Schrenkiella parvula HOM05D001849 ORTHO05D004075 3.3e-243 846.3 1452 43.3
PSO386G0057 Papaver somniferum HOM05D001849 ORTHO05D004075 7.4e-243 845.1 1546 44.4
PSO724G0042 Papaver somniferum HOM05D001849 ORTHO05D004075 2.2e-239 833.6 1531 44.7
Migut.I01106 Erythranthe guttata HOM05D001849 ORTHO05D004075 7.2e-238 828.6 1284 45.7
BcaB05g24751 Brassica carinata HOM05D001849 ORTHO05D004075 1.1e-235 821.2 1340 43.6
AUR62009923 Chenopodium quinoa HOM05D001849 ORTHO05D004075 4.4e-235 819.3 1384 41.9
Atru.chr1.4088 Acer truncatum HOM05D001849 ORTHO05D004075 4.8e-234 815.8 799 59.3
Ah.15g095140 Amaranthus hybridus HOM05D001849 ORTHO05D004075 8.2e-234 815.1 1387 45.3
TAR626G0481 Trochodendron aralioides HOM05D001849 ORTHO05D004075 2.5e-230 803.5 1106 54.6
ECA234G1749 Erigeron canadensis HOM05D001849 ORTHO05D004075 4.1e-225 786.2 1395 47.3
HanXRQChr10g0311861 Helianthus annuus HOM05D001849 ORTHO05D004075 2.2e-218 763.8 1409 46.8
SGA_v2.0_scaffold71G23886 Striga asiatica HOM05D001849 ORTHO05D004075 4.7e-213 746.1 1432 44.4
HanXRQChr12g0360181 Helianthus annuus HOM05D001849 ORTHO05D004075 2.7e-208 730.3 1402 42.4
Manes.11G016300 Manihot esculenta HOM05D001849 ORTHO05D004075 3.5e-208 729.9 1234 42.9
Oeu011098.1 Olea europaea HOM05D001849 ORTHO05D004075 8.6e-207 725.3 862 52.0
MBI19_g29883_MAGBIO Magnolia biondii HOM05D001849 ORTHO05D004075 1.5e-203 714.5 948 49.2
AUR62001442 Chenopodium quinoa HOM05D001849 ORTHO05D004075 1.4e-201 708.0 1378 38.2
unitig_747.g21722 Utricularia gibba HOM05D001849 ORTHO05D004075 2.4e-201 707.2 1431 41.2
HPP92_011068 Vanilla planifolia HOM05D001849 ORTHO05D004075 7.8e-200 702.2 1439 42.7
Actinidia32208 Actinidia chinensis HOM05D001849 ORTHO05D004075 1.7e-191 674.5 1050 49.1
Medtr5g009590 Medicago truncatula HOM05D001849 ORTHO05D004075 2.3e-188 664.1 982 44.3
Nitab4.5_0012739g0010 Nicotiana tabacum HOM05D001849 ORTHO05D004075 2.9e-186 657.1 1164 44.3
Haze_16065 Corylus avellana HOM05D001849 ORTHO05D004075 4.3e-182 643.3 556 65.1
PSO386G0247 Papaver somniferum HOM05D001849 ORTHO05D004075 1.4e-177 628.2 1416 40.1
Nitab4.5_0004322g0020 Nicotiana tabacum HOM05D001849 ORTHO05D004075 1.2e-160 572.0 817 46.8
BcaB03g14988 Brassica carinata HOM05D001849 ORTHO05D004075 6.2e-157 559.7 1252 35.3
Zm00001eb203360 Zea mays HOM05D001849 ORTHO05D004075 8.7e-151 539.3 1273 37.3
ATR0681G273 Amborella trichopoda HOM05D001849 ORTHO05D004075 4.3e-150 537.0 1293 38.4
PSO724G0283 Papaver somniferum HOM05D001849 ORTHO05D004075 4.6e-136 490.3 1276 38.3
QL05p003384 Quercus lobata HOM05D001849 ORTHO05D004075 1.9e-134 485.0 905 52.5
CDE06G0789 Ceratophyllum demersum HOM05D001849 ORTHO05D004075 3.3e-134 484.2 1326 34.0
TAR622G0522 Trochodendron aralioides HOM05D001849 ORTHO05D004075 1.8e-108 398.7 1405 31.3
Actinidia32207 Actinidia chinensis HOM05D001849 ORTHO05D004075 1.7e-106 392.1 332 62.3
MBI16_g25623_MAGBIO Magnolia biondii HOM05D001849 ORTHO05D004075 7.7e-99 366.7 1447 31.2
Psat5g189840 Pisum sativum HOM05D001849 ORTHO05D004075 3.8e-98 364.4 494 45.3
Nn3g17987 Nelumbo nucifera HOM05D001849 ORTHO05D004075 8.0e-96 356.7 1416 29.5
ECA247G2654 Erigeron canadensis HOM05D001849 ORTHO05D004075 1.5e-94 352.4 1044 31.0
CDE07G1198 Ceratophyllum demersum HOM05D001849 ORTHO05D004075 6.8e-87 327.0 1220 30.1
Medtr8g106435 Medicago truncatula HOM05D001849 ORTHO05D004075 1.5e-81 309.3 539 41.6
Psat5g189920 Pisum sativum HOM05D004963 ORTHO05D006638 4.1e-76 291.2 422 43.8
SEGI_32525 Sequoiadendron giganteum HOM05D001849 ORTHO05D004075 7.8e-75 287.0 1307 32.0
Haze_16071 Corylus avellana HOM05D001849 ORTHO05D004075 2.9e-69 268.5 497 41.2
Prupe.1G319400 Prunus persica HOM05D001849 ORTHO05D004075 3.5e-67 261.5 951 28.5
SHI29649 Sapria himalayana HOM05D001849 ORTHO05D004075 4.6e-67 261.2 441 43.3
SEGI_18725 Sequoiadendron giganteum HOM05D001849 ORTHO05D004075 2.8e-64 251.9 1106 29.8
Actinidia14933 Actinidia chinensis HOM05D001849 ORTHO05D004075 1.4e-63 249.6 976 27.9
QL01p003145 Quercus lobata HOM05D001849 ORTHO05D004075 5.8e-62 244.2 974 27.9
Dinv16157 Davidia involucrata HOM05D001849 ORTHO05D004075 5.6e-57 227.6 994 27.5
TAR626G0936 Trochodendron aralioides HOM05D001849 ORTHO05D004075 1.5e-54 219.5 233 55.8
vmacro15055 Vaccinium macrocarpon HOM05D001849 ORTHO05D004075 4.4e-54 218.0 229 54.6
Atru.chr11.324 Acer truncatum HOM05D001849 ORTHO05D004075 3.2e-52 211.8 334 39.8
Psat4g083360 Pisum sativum HOM05D001061 ORTHO05D006881 4.2e-52 211.5 228 50.4
Lsat_1_v5_gn_1_37801 Lactuca sativa HOM05D001849 ORTHO05D004075 9.3e-52 210.3 854 27.6
Cfa015821 Carpinus fangiana HOM05D001849 ORTHO05D004075 1.0e-50 206.8 723 29.6
Rhsim09G0102300 Rhododendron simsii HOM05D001849 ORTHO05D004075 3.9e-50 204.9 293 42.3
CANSAT01G2891 Cannabis sativa HOM05D001849 ORTHO05D004075 1.1e-47 196.8 878 28.2
Haze_00674 Corylus avellana HOM05D001849 ORTHO05D004075 6.4e-45 187.6 1066 25.7
CiPaw.05G244500 Carya illinoinensis HOM05D001849 ORTHO05D004075 5.4e-44 184.5 689 27.3
Dinv04913 Davidia involucrata HOM05D001849 ORTHO05D004075 3.9e-42 178.3 886 27.3
HanXRQChr04g0094421 Helianthus annuus HOM05D001849 ORTHO05D004075 1.3e-40 173.3 255 41.2
SHI29651 Sapria himalayana HOM05D001849 ORTHO05D004075 6.2e-40 171.0 576 49.7
Lj6A751T55 Lonicera japonica HOM05D001849 ORTHO05D004075 1.8e-39 169.5 202 49.0
BcaC03g15372 Brassica carinata HOM05D001849 ORTHO05D004075 4.0e-39 168.3 495 30.3
Mapoly0055s0059 Marchantia polymorpha HOM05D001849 ORTHO05D004075 3.8e-37 161.8 1029 24.4
CSS0014980 Camellia sinensis var. sinensis HOM05D001849 ORTHO05D004075 2.8e-32 145.6 715 24.2
Manes.14G108850 Manihot esculenta HOM05D001849 ORTHO05D004075 6.2e-32 144.4 860 24.1
Oeu011104.1 Olea europaea HOM05D001849 ORTHO05D004075 1.1e-31 143.7 206 68.0
Pp3c3_3510 Physcomitrium patens HOM05D001849 ORTHO05D004075 3.1e-31 142.1 1067 23.3
Pp3c13_8340 Physcomitrium patens HOM05D001849 ORTHO05D004075 7.9e-27 127.5 1055 21.5
AagrBONN_evm.TU.Sc2ySwM_344.4287 Anthoceros agrestis HOM05D001849 ORTHO05D004075 3.3e-25 122.1 920 23.9
Cpa.g.sc25.149 Carica papaya HOM05D020865 ORTHO05D004075 3.1e-23 115.5 182 45.6
SHI29648 Sapria himalayana HOM05D001849 ORTHO05D004075 1.7e-21 109.8 108 53.7
BcaB03g14986 Brassica carinata HOM05D001849 ORTHO05D004075 1.1e-20 107.1 140 43.6
SHI29650 Sapria himalayana HOM05D001849 ORTHO05D004075 3.2e-20 105.5 221 34.4
Oeu013447.1 Olea europaea HOM05D001849 ORTHO05D004075 1.2e-19 103.6 213 35.2
vmacro10614 Vaccinium macrocarpon HOM05D001849 ORTHO05D004075 1.3e-18 100.1 90 54.4
CBR_g31688 Chara braunii HOM05D001849 ORTHO05D004075 3.0e-18 99.0 172 33.1
Medtr8g106415 Medicago truncatula HOM05D001849 ORTHO05D004075 8.7e-18 97.4 94 53.2
MBI19_g29884_MAGBIO Magnolia biondii HOM05D001849 ORTHO05D004075 6.9e-15 87.8 115 50.4
Atru.chr11.323 Acer truncatum HOM05D001849 ORTHO05D004075 3.6e-11 75.5 362 27.9
SEGI_04298 Sequoiadendron giganteum HOM05D001849 ORTHO05D004075 6.1e-11 74.7 127 39.4
Nitab4.5_0006425g0080 Nicotiana tabacum HOM05D001849 ORTHO05D004075 1.4e-10 73.6 399 30.1
Manes.06G063600 Manihot esculenta HOM05D001849 ORTHO05D004075 4.3e-09 68.6 69 55.1
MCO11G122 Micromonas commoda HOM05D001849 ORTHO05D004075 5.7e-09 68.2 80 40.0
Medtr3g035000 Medicago truncatula HOM05D000079 ORTHO05D004075 4.1e-07 62.0 55 50.9
Glyma.16G010466 Glycine max HOM05D001849 ORTHO05D004075 6.9e-07 61.2 37 73.0
Nitab4.5_0004322g0030 Nicotiana tabacum HOM05D001849 ORTHO05D004075 1.5e-06 60.1 58 51.7
SEGI_02030 Sequoiadendron giganteum HOM05D001849 ORTHO05D004075 7.7e-06 57.8 60 51.7


User provided reference genes

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